Clone RE20516 Report

Search the DGRC for RE20516

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:205
Well:16
Vector:pFlc-1
Associated Gene/TranscriptisoQC-RA
Protein status:RE20516.pep: gold
Preliminary Size:1320
Sequenced Size:1989

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5976 2004-10-12 Blastp of sequenced clone
CG5976 2008-04-29 Release 5.5 accounting
CG5976 2008-08-15 Release 5.9 accounting
CG5976 2008-12-18 5.12 accounting

Clone Sequence Records

RE20516.complete Sequence

1989 bp (1989 high quality bases) assembled on 2004-10-12

GenBank Submission: BT016015

> RE20516.complete
AAATAATACGCGTAAACAAAACGATTTTGGTTGAATTAGTAAACAAGGAA
ATTAAATGATTTTTGAGAGGAGTGCAATAAATTACTGATGGGAAACAAAT
AGACACCCACAACGAGCGTTACCTATAGACAGTGTTATTTTCGTTAGCAT
TTTGACCCCCTTTGCGACGCCCATTTTTGTTATTTTGTGCCTTACAAGTC
GGCCGTAAAAACTGGCCAAAATGATAATTTAATAGACTCGCCAAAGGGTC
TTAAGTACAAGCCGGAGTGTGCCGCAAAATAGTTGCGCAGCCGGATGACC
AATCTTTAAACTTCTTACGAACCTGCCGCTATTGATTGCAACCACCTGTT
GGGACACAACACTCCCACCGCCGAACAAAAACACTCAGCCACGTAGTCTT
AAGTCAGTCGGTTAAATATGCTACATCGAACAGCTAGAATGTGGACGCTG
TGCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCA
GAAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGC
TCTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACAC
CTAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAAC
AAATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAG
ACTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGC
AAATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAG
ATATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGG
AATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAAC
CTGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACT
GAGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGG
GACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCAC
CATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTT
GGGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCT
GGTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTC
CTGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTA
CTTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATAC
CCTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTT
CCCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGC
GACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATC
TGCTGGCCGGAACCGAGGCCAAGTAGTCAAGTGGGCTTCCGTGTGAATCA
CAAATGACAAATGTTGTATCTACTTCAGGCCTTATCTAATTGACCTGTTC
CAGTATCGGAGCATTGTTGGAAGTTCTTATGCCCGCCGGAAGATCCCTAG
AAAACCTTGTTGTAACCGACTGCGTGCTTTAAAACTAATAAGGGAAGATC
TGCAACACGCGTACTCCAAATATTTTTATACACATGTATTTATAGAAAAT
GCTTAGCTAATGACACGTCAGGTTTATATATTTTTTGTAATCTTTCGGTT
GTAAATTGTTTCACTTATGTAAGTTAACTAAGTTAACCGGACTGATTGTC
CGCACACCAGCACCGGTCAAATTGCTGACCAAGCATTTGGCCGGAAGCTC
ATGCATAGCCGGCAGAAGCTCTGCGCATTGGCAGAGGCCGCTATGATGTT
TTTCCCTTTGTTAGCTTATAGTCAGTTTGATTTTGTATTCAATAAAGAGC
GCATCGCGCCTTCAATCAACTCCAAAAAAAAAAAAAAAA

RE20516.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976.e 4752 CG5976.e 110..2083 1..1974 9870 100 Plus
CG5976.a 3596 CG5976.a 110..2083 1..1974 9870 100 Plus
CG5976.d 2797 CG5976.d 110..2083 1..1974 9870 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20464573..20466021 525..1973 7230 99.9 Plus
chr3L 24539361 chr3L 20463982..20464509 1..528 2595 99.4 Plus
chrU 10048995 chrU 9264542..9264747 1973..1768 1015 99.5 Minus
chr3L 24539361 chr3L 20472958..20473159 1772..1973 1010 100 Plus
chrX 22417052 chrX 10240343..10240550 1766..1973 1010 99 Plus
chr2L 23010047 chr2L 3251125..3251328 1770..1973 1005 99.5 Plus
chrX 22417052 chrX 4996371..4996573 1973..1771 1000 99.5 Minus
chrX 22417052 chrX 4989267..4989468 1973..1772 995 99.5 Minus
chrX 22417052 chrX 10247453..10247654 1772..1973 995 99.5 Plus
chr2L 23010047 chr2L 3258231..3258432 1772..1973 995 99.5 Plus
chr3R 27901430 chr3R 26904020..26904227 1973..1766 995 98.6 Minus
chr3R 27901430 chr3R 26896883..26897084 1973..1772 980 99 Minus
chrX 22417052 chrX 21596595..21596760 1927..1762 785 98.2 Minus
chr2RHet 3288813 chr2RHet 2930126..2930285 1768..1927 785 99.4 Plus
chrU 10048995 chrU 1040809..1040965 1771..1927 770 99.4 Plus
chrU 10048995 chrU 8814465..8814621 1927..1771 770 99.4 Minus
chrU 10048995 chrU 8644616..8644771 1927..1772 765 99.4 Minus
chrX 22417052 chrX 21589370..21589525 1927..1772 765 99.4 Minus
chr3R 27901430 chr3R 3521765..3521925 1767..1927 760 98.1 Plus
chr3R 27901430 chr3R 3528995..3529150 1772..1927 750 98.7 Plus
chrX 22417052 chrX 21614156..21614356 1973..1772 525 85.1 Minus
chrU 10048995 chrU 1006639..1006785 1770..1917 510 91.2 Plus
chrU 10048995 chrU 4331344..4331490 1917..1770 510 91.2 Minus
chrU 10048995 chrU 9715961..9716161 1973..1772 510 84.7 Minus
chrX 22417052 chrX 21572586..21572786 1973..1772 510 84.7 Minus
chrX 22417052 chrX 21664611..21664757 1917..1770 510 91.2 Minus
chrXHet 204175 chrXHet 180716..180853 1766..1903 480 89.9 Plus
chrU 10048995 chrU 5677054..5677184 1765..1896 475 92.4 Plus
chr2RHet 3288813 chr2RHet 947395..947540 1917..1771 475 89.8 Minus
chr2RHet 3288813 chr2RHet 939412..939556 1917..1772 470 89.7 Minus
chr3LHet 2555433 chr3LHet 7781..7914 1772..1903 455 91 Plus
chr2R 21145070 chr2R 907637..907769 1896..1765 450 91 Minus
chr2R 21145070 chr2R 1505210..1505335 1896..1770 450 92.1 Minus
chr3LHet 2555433 chr3LHet 583750..583890 1903..1765 445 89.4 Minus
chrU 10048995 chrU 2986490..2986613 1772..1896 440 92 Plus
chr3LHet 2555433 chr3LHet 5200..5333 1772..1903 440 90.3 Plus
chr2LHet 368865 chr2LHet 311243..311366 1896..1772 440 92 Minus
chr3L 24539361 chr3L 23831339..23831472 1770..1903 430 88.1 Plus
chrU 10048995 chrU 122608..122747 1903..1764 430 87.1 Minus
chrU 10048995 chrU 1945410..1945531 1772..1894 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1483149..1483270 1772..1894 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1490151..1490272 1772..1894 430 91.9 Plus
chr2RHet 3288813 chr2RHet 1496375..1496496 1772..1894 430 91.9 Plus
chr2LHet 368865 chr2LHet 317732..317853 1892..1770 430 91.9 Minus
chr3LHet 2555433 chr3LHet 11734..11867 1772..1903 425 89.6 Plus
chrU 10048995 chrU 9092986..9093113 1769..1896 415 88.3 Plus
chrU 10048995 chrU 1029067..1029166 1871..1772 410 94 Minus
chr3L 24539361 chr3L 23183199..23183327 1766..1894 390 86.8 Plus
chr3L 24539361 chr3L 23535370..23535498 1766..1894 390 86.8 Plus
chrU 10048995 chrU 5918568..5918658 1862..1772 380 94.5 Minus
chrX 22417052 chrX 21630100..21630220 1903..1783 380 87.6 Minus
chr2R 21145070 chr2R 1477497..1477587 1772..1862 380 94.5 Plus
chr2RHet 3288813 chr2RHet 1476936..1477046 1783..1894 375 91.1 Plus
chr3LHet 2555433 chr3LHet 888426..888515 1898..1809 375 94.4 Minus
chr2R 21145070 chr2R 1484056..1484146 1772..1862 365 93.4 Plus
chrU 10048995 chrU 2888756..2888844 1808..1896 340 92.1 Plus
chr2R 21145070 chr2R 776526..776656 1903..1773 340 84 Minus
chr2L 23010047 chr2L 21576507..21576586 1849..1770 325 93.8 Minus
chr3LHet 2555433 chr3LHet 26095..26222 1896..1766 260 81.7 Minus
chr3LHet 2555433 chr3LHet 2500925..2501105 1973..1790 260 81.1 Minus
chr3LHet 2555433 chr3LHet 2493678..2493835 1973..1813 250 82.7 Minus
chrU 10048995 chrU 3119107..3119287 1973..1790 245 80.5 Minus
chr2R 21145070 chr2R 1470956..1471040 1832..1917 245 88.4 Plus
chr3L 24539361 chr3L 23834719..23834787 1835..1903 240 89.9 Plus
chrU 10048995 chrU 5776080..5776237 1813..1973 235 82.1 Plus
chr2L 23010047 chr2L 22680789..22680862 1903..1830 235 87.8 Minus
chr3L 24539361 chr3L 24463088..24463268 1790..1973 230 80 Plus
chrU 10048995 chrU 6182656..6182722 1772..1838 230 89.6 Plus
chr3LHet 2555433 chr3LHet 1237736..1237916 1790..1973 230 80 Plus
chr2R 21145070 chr2R 1204686..1204748 1834..1772 225 90.5 Minus
chrU 10048995 chrU 1061598..1061778 1973..1790 220 77.2 Minus
chr2RHet 3288813 chr2RHet 1007742..1007806 1834..1770 205 87.7 Minus
chr2RHet 3288813 chr2RHet 1084845..1084897 1824..1772 205 92.5 Minus
chr2RHet 3288813 chr2RHet 958774..958838 1770..1834 205 87.7 Plus
chr2R 21145070 chr2R 1470912..1470959 1765..1812 195 93.8 Plus
chr3LHet 2555433 chr3LHet 2474286..2474365 1771..1850 190 82.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475561..20477010 525..1974 7250 100 Plus
3L 28110227 3L 20474970..20475497 1..528 2640 100 Plus
3L 28110227 3L 27224886..27225092 1768..1974 1020 99.5 Plus
3L 28110227 3L 20483946..20484148 1772..1974 1015 100 Plus
X 23542271 X 10348848..10349056 1766..1974 1015 99 Plus
2L 23513712 2L 3251547..3251751 1770..1974 1010 99.5 Plus
X 23542271 X 5103635..5103838 1974..1771 1005 99.5 Minus
3L 28110227 3L 27232029..27232231 1772..1974 1000 99.5 Plus
X 23542271 X 5096531..5096733 1974..1772 1000 99.5 Minus
X 23542271 X 10355958..10356160 1772..1974 1000 99.5 Plus
2L 23513712 2L 3258653..3258855 1772..1974 1000 99.5 Plus
3R 32079331 3R 31081624..31081832 1974..1766 1000 98.6 Minus
3R 32079331 3R 31074487..31074689 1974..1772 985 99 Minus
3L 28110227 3L 27520719..27520878 1927..1768 785 99.4 Minus
3L 28110227 3L 27829808..27829967 1927..1768 785 99.4 Minus
X 23542271 X 21731437..21731602 1927..1762 785 98.2 Minus
X 23542271 X 21908124..21908280 1927..1771 770 99.4 Minus
3L 28110227 3L 27813523..27813678 1927..1772 765 99.4 Minus
X 23542271 X 21724212..21724367 1927..1772 765 99.4 Minus
3CEN 744266 3CEN 284869..285024 1927..1772 765 99.4 Minus
3R 32079331 3R 7695705..7695865 1767..1927 760 98.1 Plus
3R 32079331 3R 7702935..7703090 1772..1927 750 98.7 Plus
X 23542271 X 21748997..21749198 1974..1772 530 85.2 Minus
X 23542271 X 21707427..21707628 1974..1772 515 84.7 Minus
X 23542271 X 21799453..21799599 1917..1770 510 91.2 Minus
X 23542271 X 21869840..21869986 1917..1770 510 91.2 Minus
X 23542271 X 21942769..21942915 1917..1770 510 91.2 Minus
Xmm 1049845 Xmm 900015..900161 1917..1770 510 91.2 Minus
X 23542271 X 23201838..23201975 1766..1903 480 89.9 Plus
2R 25286936 2R 5020086..5020217 1896..1765 480 90.9 Minus
3R 32079331 3R 364641..364771 1765..1896 475 92.4 Plus
2R 25286936 2R 2204261..2204406 1917..1771 475 89.8 Minus
2R 25286936 2R 2196279..2196423 1917..1772 470 89.7 Minus
3L 28110227 3L 24559992..24560125 1772..1903 455 91 Plus
2R 25286936 2R 5617837..5617962 1896..1770 450 92.1 Minus
3L 28110227 3L 23842439..23842572 1770..1903 445 88.8 Plus
3L 28110227 3L 25098295..25098435 1903..1765 445 89.4 Minus
3L 28110227 3L 24557411..24557544 1772..1903 440 90.3 Plus
2L 23513712 2L 23456064..23456187 1896..1772 440 92 Minus
3R 32079331 3R 376056..376179 1772..1896 440 92 Plus
2L 23513712 2L 23462561..23462682 1892..1770 430 91.9 Minus
2R 25286936 2R 545492..545631 1903..1764 430 87.1 Minus
2R 25286936 2R 2713193..2713314 1772..1894 430 91.9 Plus
2R 25286936 2R 2719417..2719538 1772..1894 430 91.9 Plus
3L 28110227 3L 24563945..24564078 1772..1903 425 89.6 Plus
Y 3667352 Y 677608..677735 1769..1896 415 88.3 Plus
X 23542271 X 21919923..21920022 1772..1871 410 94 Plus
3L 28110227 3L 23194267..23194395 1766..1894 390 86.8 Plus
3L 28110227 3L 23546450..23546578 1766..1894 390 86.8 Plus
X 23542271 X 21764942..21765062 1903..1783 380 87.6 Minus
2R 25286936 2R 5590140..5590230 1772..1862 380 94.5 Plus
U 3151297 U 2647128..2647218 1862..1772 380 94.5 Minus
3L 28110227 3L 25457759..25457848 1898..1809 375 94.4 Minus
2R 25286936 2R 2706196..2706306 1783..1894 375 91.1 Plus
2R 25286936 2R 5596699..5596789 1772..1862 365 93.4 Plus
2R 25286936 2R 4888955..4889085 1903..1773 340 84 Minus
Y 3667352 Y 2611463..2611551 1896..1808 340 92.1 Minus
2L 23513712 2L 21578012..21578091 1849..1770 325 93.8 Minus
3L 28110227 3L 27377999..27378180 1974..1790 265 81.2 Minus
Y 3667352 Y 684726..684853 1896..1766 260 81.7 Minus
3L 28110227 3L 27370752..27370910 1974..1813 255 82.8 Minus
X 23542271 X 22125810..22125991 1974..1790 250 80.6 Minus
2R 25286936 2R 5583599..5583683 1832..1917 245 88.4 Plus
3L 28110227 3L 23845819..23845887 1835..1903 240 89.9 Plus
2L 23513712 2L 22524896..22525054 1813..1974 240 82.2 Plus
3R 32079331 3R 884605..884679 1874..1800 240 88 Minus
2R 25286936 2R 3822361..3822519 1813..1974 240 82.2 Plus
3L 28110227 3L 24474187..24474368 1790..1974 235 80.1 Plus
3L 28110227 3L 25855078..25855259 1790..1974 235 80.1 Plus
X 23542271 X 23438329..23438510 1790..1974 235 80.1 Plus
2L 23513712 2L 22789563..22789636 1903..1830 235 87.8 Minus
3R 32079331 3R 871502..871566 1836..1772 235 90.8 Minus
2R 25286936 2R 863454..863527 1830..1903 235 87.8 Plus
U 3151297 U 1068341..1068407 1772..1838 230 89.6 Plus
2R 25286936 2R 1485269..1485450 1974..1790 225 77.3 Minus
2R 25286936 2R 5317291..5317353 1834..1772 225 90.5 Minus
2R 25286936 2R 2215640..2215704 1770..1834 205 87.7 Plus
2R 25286936 2R 2264565..2264629 1834..1770 205 87.7 Minus
2R 25286936 2R 2312049..2312101 1824..1772 205 92.5 Minus
2R 25286936 2R 5583555..5583602 1765..1812 195 93.8 Plus
3L 28110227 3L 27351359..27351438 1771..1850 190 82.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20468661..20470110 525..1974 7250 100 Plus
3L 28103327 3L 20468070..20468597 1..528 2640 100 Plus
3L 28103327 3L 27217986..27218192 1768..1974 1020 99.5 Plus
3L 28103327 3L 20477046..20477248 1772..1974 1015 100 Plus
X 23527363 X 10356946..10357154 1766..1974 1015 99 Plus
2L 23513712 2L 3251547..3251751 1770..1974 1010 99.5 Plus
X 23527363 X 5111733..5111936 1974..1771 1005 99.5 Minus
3L 28103327 3L 27225129..27225331 1772..1974 1000 99.5 Plus
X 23527363 X 10364056..10364258 1772..1974 1000 99.5 Plus
X 23527363 X 5104629..5104831 1974..1772 1000 99.5 Minus
3R 31820162 3R 30822455..30822663 1974..1766 1000 98.5 Minus
2L 23513712 2L 3258653..3258855 1772..1974 1000 99.5 Plus
3R 31820162 3R 30815318..30815520 1974..1772 985 99 Minus
3L 28103327 3L 27822908..27823067 1927..1768 785 99.3 Minus
3L 28103327 3L 27513819..27513978 1927..1768 785 99.3 Minus
X 23527363 X 21716529..21716694 1927..1762 785 98.1 Minus
X 23527363 X 21893216..21893372 1927..1771 770 99.3 Minus
Unimproved_211000022218732_156_860 704 Unimproved_211000022218732_156_860 363..519 1927..1771 770 99.3 Minus
3L 28103327 3L 27806623..27806778 1927..1772 765 99.3 Minus
X 23527363 X 21709304..21709459 1927..1772 765 99.3 Minus
3R 31820162 3R 7436536..7436696 1767..1927 760 98.1 Plus
3R 31820162 3R 7443766..7443921 1772..1927 750 98.7 Plus
X 23527363 X 21734089..21734290 1974..1772 555 87.2 Minus
X 23527363 X 21692519..21692720 1974..1772 540 86.7 Minus
X 23527363 X 21927861..21928007 1917..1770 520 91.2 Minus
X 23527363 X 21854932..21855078 1917..1770 520 91.2 Minus
X 23527363 X 21784545..21784691 1917..1770 520 91.2 Minus
3R 31820162 3R 162219..162392 1765..1939 490 88 Plus
2R 25260384 2R 2204261..2204406 1917..1771 485 89.7 Minus
X 23527363 X 23186930..23187067 1766..1903 480 89.8 Plus
2R 25260384 2R 5021285..5021416 1896..1765 480 90.9 Minus
2R 25260384 2R 2196279..2196423 1917..1772 480 89.7 Minus
3L 28103327 3L 24553092..24553225 1772..1903 465 91 Plus
2R 25260384 2R 5618993..5619161 1939..1770 465 87.7 Minus
3L 28103327 3L 25091395..25091535 1903..1765 455 89.3 Minus
2L 23513712 2L 23456021..23456187 1939..1772 455 87.5 Minus
3L 28103327 3L 24550511..24550644 1772..1903 450 90.2 Plus
3R 31820162 3R 173634..173757 1772..1896 450 92 Plus
3L 28103327 3L 23835539..23835672 1770..1903 445 88.8 Plus
2R 25260384 2R 2719417..2719538 1772..1894 440 91.8 Plus
2R 25260384 2R 2713193..2713314 1772..1894 440 91.8 Plus
2L 23513712 2L 23462561..23462682 1892..1770 440 91.8 Minus
3L 28103327 3L 24557045..24557178 1772..1903 435 89.5 Plus
2R 25260384 2R 545492..545631 1903..1764 430 87.1 Minus
Y 3410481 Y 952755..952882 1769..1896 415 88.2 Plus
X 23527363 X 21905015..21905114 1772..1871 410 94 Plus
3L 28103327 3L 23539550..23539711 1766..1928 400 84 Plus
3L 28103327 3L 23187367..23187528 1766..1928 400 84 Plus
2R 25260384 2R 2706196..2706306 1783..1894 385 91 Plus
X 23527363 X 21750034..21750154 1903..1783 380 87.6 Minus
2R 25260384 2R 5591339..5591429 1772..1862 380 94.5 Plus
3L 28103327 3L 25450859..25450948 1898..1809 375 94.4 Minus
2R 25260384 2R 5597898..5597988 1772..1862 365 93.4 Plus
2R 25260384 2R 4890154..4890284 1903..1773 340 83.9 Minus
Unmapped_scaffold_03 170808 Unmapped_scaffold_03 115243..115331 1896..1808 340 92.1 Minus
2L 23513712 2L 21578012..21578091 1849..1770 325 93.7 Minus
2R 25260384 2R 5584798..5584882 1832..1917 255 88.3 Plus
3L 28103327 3L 23838919..23838987 1835..1903 240 89.8 Plus
3R 31820162 3R 682183..682257 1874..1800 240 88 Minus
2R 25260384 2R 863454..863527 1830..1903 235 87.8 Plus
3R 31820162 3R 669080..669144 1836..1772 235 90.7 Minus
2L 23513712 2L 22789563..22789636 1903..1830 235 87.8 Minus
2R 25260384 2R 5318490..5318552 1834..1772 225 90.4 Minus
3L 28103327 3L 27363852..27363904 1974..1922 220 94.3 Minus
3L 28103327 3L 25848307..25848359 1922..1974 220 94.3 Plus
3L 28103327 3L 27371099..27371151 1974..1922 220 94.3 Minus
X 23527363 X 22110902..22110954 1974..1922 220 94.3 Minus
2R 25260384 2R 3823666..3823718 1922..1974 220 94.3 Plus
2L 23513712 2L 22525002..22525054 1922..1974 220 94.3 Plus
Y 3410481 Y 959932..960000 1834..1766 210 86.9 Minus
X 23527363 X 23423550..23423602 1922..1974 205 92.4 Plus
2R 25260384 2R 2215640..2215704 1770..1834 205 87.6 Plus
2R 25260384 2R 1485269..1485321 1974..1922 205 92.4 Minus
2R 25260384 2R 2312049..2312101 1824..1772 205 92.4 Minus
2R 25260384 2R 2264565..2264629 1834..1770 205 87.6 Minus
2R 25260384 2R 5584754..5584801 1765..1812 195 93.7 Plus
3L 28103327 3L 27344459..27344538 1771..1850 190 82.5 Plus
3L 28103327 3L 24467416..24467468 1922..1974 190 90.5 Plus
2R 25260384 2R 1485719..1485802 1893..1809 190 83.5 Minus
3L 28103327 3L 24467287..24467390 1790..1896 170 80.3 Plus
3L 28103327 3L 25848178..25848252 1790..1864 165 81.3 Plus
3L 28103327 3L 27371206..27371280 1864..1790 165 81.3 Minus
X 23527363 X 23423421..23423495 1790..1864 165 81.3 Plus
2R 25260384 2R 1485376..1485450 1864..1790 165 81.3 Minus
Y 3410481 Y 959873..959923 1896..1846 165 88.2 Minus
3L 28103327 3L 27363959..27364010 1864..1813 155 86.5 Minus
2R 25260384 2R 3823560..3823611 1813..1864 155 86.5 Plus
2L 23513712 2L 22524896..22524947 1813..1864 155 86.5 Plus
X 23527363 X 22111009..22111083 1864..1790 150 80 Minus
Blast to na_te.dros performed 2019-03-15 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 1..202 1772..1973 992 99 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7138..7339 1772..1973 992 99 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 7417..7630 1769..1973 574 78 Plus
gypsy6 7826 gypsy6 GYPSY6 7826bp 1..211 1772..1973 568 78.1 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 31..183 1824..1973 415 79.6 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 6606..6758 1824..1973 415 79.6 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 42..130 1804..1896 166 68.8 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 6530..6618 1804..1896 166 68.8 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 1..32 1772..1803 151 96.9 Plus
gypsy3 6973 gypsy3 GYPSY3 6973bp 6576..6607 1772..1803 151 96.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6858..6958 1678..1774 118 59.4 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 4995..5074 1432..1512 114 61.7 Plus

RE20516.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:32 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20463982..20464509 1..528 99 -> Plus
chr3L 20464577..20465819 529..1771 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:01 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1059 418..1476 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:44 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1059 418..1476 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:18 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 1..1059 418..1476 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:34 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1059 418..1476 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:40 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 1..1059 418..1476 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:35:12 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:44 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1967 1..1967 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:18 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 9..1975 1..1967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:34 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1476 1..1476 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:40 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 9..1975 1..1967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:32 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474970..20475497 1..528 100 -> Plus
3L 20475565..20477009 529..1973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:32 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474970..20475497 1..528 100 -> Plus
3L 20475565..20477009 529..1973 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:32 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20474970..20475497 1..528 100 -> Plus
3L 20475565..20477009 529..1973 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:18 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468070..20468597 1..528 100 -> Plus
arm_3L 20468665..20470109 529..1973 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:27 Download gff for RE20516.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20468070..20468597 1..528 100 -> Plus
3L 20468665..20470109 529..1973 100   Plus

RE20516.hyp Sequence

Translation from 417 to 1475

> RE20516.hyp
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AK*

RE20516.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PA 352 CG5976-PA 1..352 1..352 1835 100 Plus
isoQC-PB 354 CG5976-PB 34..354 32..352 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 11..331 11..345 690 41.4 Plus
CG6168-PB 342 CG6168-PB 11..331 11..345 690 41.4 Plus
QC-PA 340 CG32412-PA 37..326 58..345 646 43.5 Plus

RE20516.pep Sequence

Translation from 417 to 1475

> RE20516.pep
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AK*

RE20516.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10348-PA 357 GF10348-PA 1..352 1..351 1544 83.2 Plus
Dana\GF24557-PA 349 GF24557-PA 12..317 33..352 646 44.6 Plus
Dana\GF10438-PA 356 GF10438-PA 45..320 58..329 625 43.9 Plus
Dana\GF10436-PA 317 GF10436-PA 16..290 58..345 320 30.3 Plus
Dana\GF10437-PA 327 GF10437-PA 34..306 57..341 282 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16120-PA 390 GG16120-PA 40..384 1..345 1769 95.4 Plus
Dere\GG13925-PA 341 GG13925-PA 11..331 11..345 751 45.6 Plus
Dere\GG14104-PA 344 GG14104-PA 37..330 58..345 667 43.6 Plus
Dere\GG14103-PA 268 GG14103-PA 17..204 58..296 207 26.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14553-PA 362 GH14553-PA 10..355 8..352 1337 72.3 Plus
Dgri\GH16891-PA 314 GH16891-PA 7..300 58..345 644 44.9 Plus
Dgri\GH16890-PA 267 GH16890-PA 36..266 56..300 311 32.9 Plus
Dgri\GH16886-PA 175 GH16886-PA 1..143 122..262 213 36.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PA 352 CG5976-PA 1..352 1..352 1835 100 Plus
isoQC-PB 354 CG5976-PB 34..354 32..352 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 11..331 11..345 690 41.4 Plus
CG6168-PB 342 CG6168-PB 11..331 11..345 690 41.4 Plus
QC-PA 340 CG32412-PA 37..326 58..345 646 43.5 Plus
CG32413-PB 332 CG32413-PB 35..309 58..344 348 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13400-PA 378 GI13400-PA 44..374 19..349 1358 73.7 Plus
Dmoj\GI12035-PA 205 GI12035-PA 1..191 158..345 383 41.1 Plus
Dmoj\GI12033-PA 273 GI12033-PA 36..273 58..309 308 33.5 Plus
Dmoj\GI12029-PA 234 GI12029-PA 7..233 58..299 272 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12792-PA 357 GL12792-PA 13..357 8..352 1631 86.7 Plus
Dper\GL22833-PA 368 GL22833-PA 8..334 13..348 731 44 Plus
Dper\GL21387-PA 265 GL21387-PA 33..258 56..297 300 34.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19273-PA 357 GA19273-PA 13..357 8..352 1624 86.4 Plus
Dpse\GA19404-PA 364 GA19404-PA 8..334 13..348 729 43.7 Plus
Dpse\GA16884-PA 357 GA16884-PA 50..347 58..349 656 42.7 Plus
Dpse\GA16885-PA 321 GA16885-PA 33..308 56..345 407 34.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22298-PA 354 GM22298-PA 34..354 32..352 1665 97.2 Plus
Dsec\GM13888-PA 340 GM13888-PA 37..326 58..345 666 44.2 Plus
Dsec\GM24759-PA 225 GM24759-PA 6..209 115..333 516 46.1 Plus
Dsec\GM13887-PA 269 GM13887-PA 17..204 58..296 211 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14891-PA 391 GD14891-PA 40..391 1..352 1850 97.7 Plus
Dsim\GD12810-PA 343 GD12810-PA 11..331 11..345 703 42 Plus
Dsim\GD13170-PA 340 GD13170-PA 37..326 58..345 667 44.2 Plus
Dsim\GD13169-PA 275 GD13169-PA 16..252 57..344 299 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11525-PA 359 GJ11525-PA 11..358 8..351 1456 79.3 Plus
Dvir\GJ13305-PA 342 GJ13305-PA 35..328 58..345 636 43.3 Plus
Dvir\GJ13304-PA 330 GJ13304-PA 48..329 56..351 436 34.3 Plus
Dvir\GJ13298-PA 278 GJ13298-PA 4..277 57..345 390 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12295-PA 357 GK12295-PA 12..354 8..346 1471 80.5 Plus
Dwil\GK17529-PA 343 GK17529-PA 44..341 56..350 659 43 Plus
Dwil\GK19272-PA 228 GK19272-PA 1..199 131..352 294 35.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19688-PA 351 GE19688-PA 1..351 1..352 1763 93.8 Plus
Dyak\GE20526-PA 344 GE20526-PA 37..330 58..345 667 44.3 Plus
Dyak\GE20221-PA 344 GE20221-PA 11..332 11..345 654 43.2 Plus
Dyak\GE20525-PA 214 GE20525-PA 17..205 58..296 233 31.4 Plus