BDGP Sequence Production Resources |
Search the DGRC for RE20574
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 205 |
Well: | 74 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8298-RA |
Protein status: | RE20574.pep: gold |
Preliminary Size: | 2251 |
Sequenced Size: | 2083 |
Gene | Date | Evidence |
---|---|---|
CG8298 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8298 | 2002-02-22 | Blastp of sequenced clone |
CG8298 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8298 | 2008-04-29 | Release 5.5 accounting |
CG8298 | 2008-08-15 | Release 5.9 accounting |
CG8298 | 2008-12-18 | 5.12 accounting |
2083 bp (2083 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084124
> RE20574.complete TCTTGACAATTGGCGTTCCAAAAAGCGACAACAACAAAACACGACTTGCT TATTTTGCTCGGCTAGCGAGCCTTAACACCATTAAGCACGTGTCCGTGGA CACCCATCAGGCCAAAGATGTCCAACGGTCGTTACGGGAGGTTCGGAGCA CTCATCGGCGTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATA CTCAACGAAAAATGCCGAGGTCCTGGCCTACCATGAGCTGAAGCTGCGAC AGATTGTCCACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGG AAGAACACACAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACT AGAGATCAATCCACGTGATATTATTGCCATCGGTATCGTAAATCAGCGGG GCACCTCGGTGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCC ATCGGATGGTCAGATTGCCGTAGCACTCCCATCCTAAAGACCCTGCTCCA TAATGTCCGGCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCC TGAGCAGCTGTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTT CCTGCCGTAGCCACTGCCATTGAGGAGAACAAGTGCTTATTCGGCACCTT GGACTCCTGGCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGC ACTCTACTGACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCC ACAGAGCAGTGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAA CATACTGCCACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGG AGGGTCCTTTGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCAGCCC GCAAGTTTGTTGGGCCAACTCTGCGTGAAGGCCGGGCAAAATGTCTGTAC CCTGGACGACAGCTGTTTCGTGCTCCTTAACACGGGCAGGGAGAAGCTGG ACTCTGCAAACGGACTGATAACGGGCATAGCGCACAAGCTGGGCGAAAAA GCGGCCACTAACTACACACTCGAGGGAGCCATTTCAAATGCCGGTTCCAC GGTTACATGGCTGCGGGATAAGCTACAGATCAATACTGAGATTAATTCCA ATGATAATGTGGTGGAGTCTTTGAATACATTCATCGGCGAGAACTCGATG ATCTCGTCCTCTTGTTCCTCATCCATGCTGAATGCCGAGTGTGGACTGGC AGCCAAGAGGTCGGAGATTACGTTTGTGCCGGCATTTCATGGCATGTACG CACCCTACTGGCGACACGATGCCAGGGGCATAATCTTGGGACTTACCAGC CAGACTACAGCGGAAAACATTACCCAAGCTGCTTACGAGGCCACCGGGTT CCAGATCTTTGAAGTGCTACAGGCGTTCAAGCGCGATACACCCAACTGGG ACCGATCCAGCATGCAACCCGTGCTGACATTCGGCGGTGATTACGCCGAA AACTTGCATTTGGTGCAGTTCATAGCAGATATTATTGGCTATATGTTGGA GCGTCCACAGACCACCTCACCTGCTGGATTGGGCGTTATGATAACCGCGG GCGTGACGATGAAAGTGGTGTCCCTGGAGCACGCCGTAAAAATGTACACC CCGCCCACTGATGTCTTTTCGCCAACAACTACCAAAAATCGTCGAGAGCT GCTCTACAAGCGCTGGGCTTATGCGGTAAAGAAATGCCTGCACTGGAACA ACTACGAGACGTACGAGGCTGATATTGAGCTGTTTGCTCAGCGAGAACTT GATCCCAATTTACCTGTAAGGCGTTCCGTACCGGGCAGTATATTCCTGAC CACTTCTTTTGCGATGATTATCCTGGCTAACTACTTAAAGTCCAATCCCC TGAAATAGTGGCTGATGTAGGGAAGAACGGCTGCTCTATCTAGTCAACCA AACACGTTCAAATGTGTGCATTAAAATTTATTGTTTAGTTTAGCATATAA TCTTAAATAGTTCATTTTATATGTATATATAATCAAAGTTGTAGATCAAA ATGTTTGTGATTCACGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8298-RA | 2293 | CG8298-RA | 143..2206 | 5..2068 | 10305 | 99.9 | Plus |
CG8298.a | 3114 | CG8298.a | 143..2206 | 5..2068 | 10305 | 99.9 | Plus |
CG8298-RB | 2214 | CG8298-RB | 254..2127 | 195..2068 | 9370 | 100 | Plus |
CG8298-RB | 2214 | CG8298-RB | 10..200 | 5..195 | 940 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7876779..7878148 | 323..1692 | 6805 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 7878279..7878655 | 1691..2067 | 1885 | 100 | Plus |
chr2R | 21145070 | chr2R | 7876351..7876541 | 5..195 | 940 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 7876595..7876724 | 195..324 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11989565..11990934 | 323..1692 | 6850 | 100 | Plus |
2R | 25286936 | 2R | 11991065..11991442 | 1691..2068 | 1890 | 100 | Plus |
2R | 25286936 | 2R | 11989137..11989327 | 5..195 | 940 | 99.5 | Plus |
2R | 25286936 | 2R | 11989381..11989510 | 195..324 | 650 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11990764..11992133 | 323..1692 | 6850 | 100 | Plus |
2R | 25260384 | 2R | 11992264..11992641 | 1691..2068 | 1890 | 100 | Plus |
2R | 25260384 | 2R | 11990336..11990526 | 5..195 | 940 | 99.4 | Plus |
2R | 25260384 | 2R | 11990580..11990709 | 195..324 | 650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7876596..7876724 | 196..324 | 100 | -> | Plus |
chr2R | 7876781..7878146 | 325..1690 | 99 | -> | Plus |
chr2R | 7876347..7876541 | 1..195 | 98 | -> | Plus |
chr2R | 7878279..7878655 | 1691..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 1..1791 | 118..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 1..1791 | 118..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 1..1791 | 118..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 1..1791 | 118..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 1..1791 | 118..1908 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 2..2067 | 2..2067 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 2..2067 | 2..2067 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 3..2069 | 1..2067 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 2..2067 | 2..2067 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8298-RA | 3..2069 | 1..2067 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11989133..11989327 | 1..195 | 98 | -> | Plus |
2R | 11989382..11989510 | 196..324 | 100 | -> | Plus |
2R | 11989567..11990932 | 325..1690 | 100 | -> | Plus |
2R | 11991065..11991441 | 1691..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11989133..11989327 | 1..195 | 98 | -> | Plus |
2R | 11989382..11989510 | 196..324 | 100 | -> | Plus |
2R | 11989567..11990932 | 325..1690 | 100 | -> | Plus |
2R | 11991065..11991441 | 1691..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11989133..11989327 | 1..195 | 98 | -> | Plus |
2R | 11989382..11989510 | 196..324 | 100 | -> | Plus |
2R | 11989567..11990932 | 325..1690 | 100 | -> | Plus |
2R | 11991065..11991441 | 1691..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7876638..7876832 | 1..195 | 98 | -> | Plus |
arm_2R | 7876887..7877015 | 196..324 | 100 | -> | Plus |
arm_2R | 7877072..7878437 | 325..1690 | 100 | -> | Plus |
arm_2R | 7878570..7878946 | 1691..2067 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11990766..11992131 | 325..1690 | 100 | -> | Plus |
2R | 11992264..11992640 | 1691..2067 | 100 | Plus | |
2R | 11990332..11990526 | 1..195 | 98 | -> | Plus |
2R | 11990581..11990709 | 196..324 | 100 | -> | Plus |
Translation from 117 to 1907
> RE20574.pep MSNGRYGRFGALIGVACVSSTHCRFLIYSTKNAEVLAYHELKLRQIVHQA GWMEYDPSEIWKNTQECIETAYKNLVILEINPRDIIAIGIVNQRGTSVLW NLETGQPLHNAIGWSDCRSTPILKTLLHNVRHNVDYVRYRSGLPLSSCFS ALKIRWLMDHVPAVATAIEENKCLFGTLDSWLLWNLTGGVEMGVHSTDIT NAHYTSLMNVSTEQWDPKLCQFFRLPLNILPRIRSNSEIFGYVLEGPLHG TPIAAMMGEQPASLLGQLCVKAGQNVCTLDDSCFVLLNTGREKLDSANGL ITGIAHKLGEKAATNYTLEGAISNAGSTVTWLRDKLQINTEINSNDNVVE SLNTFIGENSMISSSCSSSMLNAECGLAAKRSEITFVPAFHGMYAPYWRH DARGIILGLTSQTTAENITQAAYEATGFQIFEVLQAFKRDTPNWDRSSMQ PVLTFGGDYAENLHLVQFIADIIGYMLERPQTTSPAGLGVMITAGVTMKV VSLEHAVKMYTPPTDVFSPTTTKNRRELLYKRWAYAVKKCLHWNNYETYE ADIELFAQRELDPNLPVRRSVPGSIFLTTSFAMIILANYLKSNPLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12283-PA | 596 | GF12283-PA | 1..595 | 1..595 | 2822 | 87.9 | Plus |
Dana\GF10570-PA | 540 | GF10570-PA | 19..537 | 10..556 | 970 | 36.9 | Plus |
Dana\GF24830-PA | 552 | GF24830-PA | 3..543 | 11..587 | 917 | 36.2 | Plus |
Dana\GF24829-PA | 576 | GF24829-PA | 31..568 | 11..585 | 916 | 36.4 | Plus |
Dana\GF24265-PA | 558 | GF24265-PA | 75..557 | 49..543 | 342 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20235-PA | 596 | GG20235-PA | 1..596 | 1..596 | 2990 | 93.1 | Plus |
Dere\GG14680-PA | 538 | GG14680-PA | 17..535 | 10..556 | 992 | 36.6 | Plus |
Dere\GG14819-PA | 576 | GG14819-PA | 31..568 | 11..585 | 925 | 36.8 | Plus |
Dere\GG14901-PA | 534 | GG14901-PA | 63..508 | 49..519 | 336 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20851-PA | 596 | GH20851-PA | 1..595 | 1..595 | 2666 | 82.2 | Plus |
Dgri\GH15662-PA | 536 | GH15662-PA | 15..533 | 10..556 | 958 | 37.1 | Plus |
Dgri\GH15761-PA | 573 | GH15761-PA | 31..568 | 11..585 | 920 | 36 | Plus |
Dgri\GH14570-PA | 513 | GH14570-PA | 12..512 | 18..543 | 384 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8298-PC | 596 | CG8298-PC | 1..596 | 1..596 | 3141 | 100 | Plus |
CG8298-PA | 596 | CG8298-PA | 1..596 | 1..596 | 3141 | 100 | Plus |
Gk1-PA | 538 | CG18374-PA | 17..535 | 10..556 | 971 | 36.8 | Plus |
Gk2-PF | 576 | CG7995-PF | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk2-PA | 576 | CG7995-PA | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk2-PB | 576 | CG7995-PB | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk2-PD | 576 | CG7995-PD | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk2-PE | 576 | CG7995-PE | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk2-PC | 576 | CG7995-PC | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk1-PB | 474 | CG18374-PB | 3..471 | 60..556 | 883 | 37.6 | Plus |
CG1271-PD | 539 | CG1271-PD | 68..538 | 49..543 | 347 | 24.1 | Plus |
CG1271-PA | 556 | CG1271-PA | 68..555 | 49..543 | 336 | 23.5 | Plus |
CG1271-PB | 406 | CG1271-PB | 47..405 | 167..543 | 260 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20956-PA | 596 | GI20956-PA | 1..595 | 1..595 | 2612 | 82 | Plus |
Dmoj\GI12707-PA | 535 | GI12707-PA | 14..532 | 10..556 | 982 | 37.5 | Plus |
Dmoj\GI12540-PA | 577 | GI12540-PA | 31..568 | 11..585 | 942 | 36.6 | Plus |
Dmoj\GI13897-PA | 515 | GI13897-PA | 43..514 | 49..543 | 363 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10517-PA | 596 | GL10517-PA | 1..595 | 1..595 | 2639 | 81.5 | Plus |
Dper\GL20743-PA | 576 | GL20743-PA | 31..568 | 11..585 | 925 | 37.2 | Plus |
Dper\GL16108-PA | 474 | GL16108-PA | 3..471 | 60..556 | 904 | 38.6 | Plus |
Dper\GL20781-PA | 531 | GL20781-PA | 58..530 | 49..543 | 359 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20966-PA | 596 | GA20966-PA | 1..595 | 1..595 | 2647 | 81.7 | Plus |
Dpse\GA14911-PA | 532 | GA14911-PA | 11..529 | 10..556 | 992 | 37.7 | Plus |
Dpse\GA20751-PA | 576 | GA20751-PA | 31..568 | 11..585 | 926 | 37.2 | Plus |
Dpse\GA11767-PA | 531 | GA11767-PA | 58..530 | 49..543 | 362 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21324-PA | 596 | GM21324-PA | 1..596 | 1..596 | 3160 | 97.8 | Plus |
Dsec\GM14296-PA | 538 | GM14296-PA | 17..535 | 10..556 | 993 | 36.6 | Plus |
Dsec\GM14440-PA | 576 | GM14440-PA | 31..568 | 11..585 | 920 | 36.8 | Plus |
Dsec\GM14527-PA | 537 | GM14527-PA | 66..536 | 49..543 | 330 | 23.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10831-PA | 596 | GD10831-PA | 1..596 | 1..596 | 3169 | 98.2 | Plus |
Dsim\GD13534-PA | 538 | GD13534-PA | 17..535 | 10..556 | 993 | 36.6 | Plus |
Dsim\GD13642-PA | 553 | GD13642-PA | 31..545 | 11..585 | 828 | 34.8 | Plus |
Dsim\GD13724-PA | 538 | GD13724-PA | 67..537 | 49..543 | 337 | 24.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20677-PA | 596 | GJ20677-PA | 1..595 | 1..595 | 2652 | 83 | Plus |
Dvir\GJ12691-PA | 524 | GJ12691-PA | 3..521 | 10..556 | 948 | 37.1 | Plus |
Dvir\GJ16056-PA | 577 | GJ16056-PA | 31..568 | 11..585 | 924 | 36.4 | Plus |
Dvir\GJ11752-PA | 515 | GJ11752-PA | 44..514 | 49..543 | 370 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19496-PA | 596 | GK19496-PA | 1..595 | 1..595 | 2629 | 80.7 | Plus |
Dwil\GK16855-PA | 536 | GK16855-PA | 12..533 | 7..556 | 969 | 37.5 | Plus |
Dwil\GK16636-PA | 576 | GK16636-PA | 31..568 | 11..585 | 918 | 36.6 | Plus |
Dwil\GK12322-PA | 533 | GK12322-PA | 19..532 | 11..543 | 361 | 25.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12395-PA | 596 | GE12395-PA | 1..596 | 1..596 | 3026 | 95.1 | Plus |
Dyak\GE21041-PA | 538 | GE21041-PA | 17..535 | 10..556 | 1001 | 37.1 | Plus |
Dyak\GE21182-PA | 576 | GE21182-PA | 31..568 | 11..585 | 924 | 36.8 | Plus |
Dyak\GE20355-PA | 538 | GE20355-PA | 67..512 | 49..519 | 337 | 24.5 | Plus |
Translation from 117 to 1907
> RE20574.hyp MSNGRYGRFGALIGVACVSSTHCRFLIYSTKNAEVLAYHELKLRQIVHQA GWMEYDPSEIWKNTQECIETAYKNLVILEINPRDIIAIGIVNQRGTSVLW NLETGQPLHNAIGWSDCRSTPILKTLLHNVRHNVDYVRYRSGLPLSSCFS ALKIRWLMDHVPAVATAIEENKCLFGTLDSWLLWNLTGGVEMGVHSTDIT NAHYTSLMNVSTEQWDPKLCQFFRLPLNILPRIRSNSEIFGYVLEGPLHG TPIAAMMGEQPASLLGQLCVKAGQNVCTLDDSCFVLLNTGREKLDSANGL ITGIAHKLGEKAATNYTLEGAISNAGSTVTWLRDKLQINTEINSNDNVVE SLNTFIGENSMISSSCSSSMLNAECGLAAKRSEITFVPAFHGMYAPYWRH DARGIILGLTSQTTAENITQAAYEATGFQIFEVLQAFKRDTPNWDRSSMQ PVLTFGGDYAENLHLVQFIADIIGYMLERPQTTSPAGLGVMITAGVTMKV VSLEHAVKMYTPPTDVFSPTTTKNRRELLYKRWAYAVKKCLHWNNYETYE ADIELFAQRELDPNLPVRRSVPGSIFLTTSFAMIILANYLKSNPLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8298-PC | 596 | CG8298-PC | 1..596 | 1..596 | 3141 | 100 | Plus |
CG8298-PA | 596 | CG8298-PA | 1..596 | 1..596 | 3141 | 100 | Plus |
Gyk-PA | 538 | CG18374-PA | 17..535 | 10..556 | 971 | 36.8 | Plus |
Gk-PF | 576 | CG7995-PF | 32..568 | 12..585 | 908 | 36.9 | Plus |
Gk-PA | 576 | CG7995-PA | 32..568 | 12..585 | 908 | 36.9 | Plus |