Clone RE20574 Report

Search the DGRC for RE20574

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:205
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG8298-RA
Protein status:RE20574.pep: gold
Preliminary Size:2251
Sequenced Size:2083

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8298 2002-01-01 Sim4 clustering to Release 2
CG8298 2002-02-22 Blastp of sequenced clone
CG8298 2003-01-01 Sim4 clustering to Release 3
CG8298 2008-04-29 Release 5.5 accounting
CG8298 2008-08-15 Release 5.9 accounting
CG8298 2008-12-18 5.12 accounting

Clone Sequence Records

RE20574.complete Sequence

2083 bp (2083 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084124

> RE20574.complete
TCTTGACAATTGGCGTTCCAAAAAGCGACAACAACAAAACACGACTTGCT
TATTTTGCTCGGCTAGCGAGCCTTAACACCATTAAGCACGTGTCCGTGGA
CACCCATCAGGCCAAAGATGTCCAACGGTCGTTACGGGAGGTTCGGAGCA
CTCATCGGCGTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATA
CTCAACGAAAAATGCCGAGGTCCTGGCCTACCATGAGCTGAAGCTGCGAC
AGATTGTCCACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGG
AAGAACACACAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACT
AGAGATCAATCCACGTGATATTATTGCCATCGGTATCGTAAATCAGCGGG
GCACCTCGGTGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCC
ATCGGATGGTCAGATTGCCGTAGCACTCCCATCCTAAAGACCCTGCTCCA
TAATGTCCGGCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCC
TGAGCAGCTGTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTT
CCTGCCGTAGCCACTGCCATTGAGGAGAACAAGTGCTTATTCGGCACCTT
GGACTCCTGGCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGC
ACTCTACTGACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCC
ACAGAGCAGTGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAA
CATACTGCCACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGG
AGGGTCCTTTGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCAGCCC
GCAAGTTTGTTGGGCCAACTCTGCGTGAAGGCCGGGCAAAATGTCTGTAC
CCTGGACGACAGCTGTTTCGTGCTCCTTAACACGGGCAGGGAGAAGCTGG
ACTCTGCAAACGGACTGATAACGGGCATAGCGCACAAGCTGGGCGAAAAA
GCGGCCACTAACTACACACTCGAGGGAGCCATTTCAAATGCCGGTTCCAC
GGTTACATGGCTGCGGGATAAGCTACAGATCAATACTGAGATTAATTCCA
ATGATAATGTGGTGGAGTCTTTGAATACATTCATCGGCGAGAACTCGATG
ATCTCGTCCTCTTGTTCCTCATCCATGCTGAATGCCGAGTGTGGACTGGC
AGCCAAGAGGTCGGAGATTACGTTTGTGCCGGCATTTCATGGCATGTACG
CACCCTACTGGCGACACGATGCCAGGGGCATAATCTTGGGACTTACCAGC
CAGACTACAGCGGAAAACATTACCCAAGCTGCTTACGAGGCCACCGGGTT
CCAGATCTTTGAAGTGCTACAGGCGTTCAAGCGCGATACACCCAACTGGG
ACCGATCCAGCATGCAACCCGTGCTGACATTCGGCGGTGATTACGCCGAA
AACTTGCATTTGGTGCAGTTCATAGCAGATATTATTGGCTATATGTTGGA
GCGTCCACAGACCACCTCACCTGCTGGATTGGGCGTTATGATAACCGCGG
GCGTGACGATGAAAGTGGTGTCCCTGGAGCACGCCGTAAAAATGTACACC
CCGCCCACTGATGTCTTTTCGCCAACAACTACCAAAAATCGTCGAGAGCT
GCTCTACAAGCGCTGGGCTTATGCGGTAAAGAAATGCCTGCACTGGAACA
ACTACGAGACGTACGAGGCTGATATTGAGCTGTTTGCTCAGCGAGAACTT
GATCCCAATTTACCTGTAAGGCGTTCCGTACCGGGCAGTATATTCCTGAC
CACTTCTTTTGCGATGATTATCCTGGCTAACTACTTAAAGTCCAATCCCC
TGAAATAGTGGCTGATGTAGGGAAGAACGGCTGCTCTATCTAGTCAACCA
AACACGTTCAAATGTGTGCATTAAAATTTATTGTTTAGTTTAGCATATAA
TCTTAAATAGTTCATTTTATATGTATATATAATCAAAGTTGTAGATCAAA
ATGTTTGTGATTCACGTAAAAAAAAAAAAAAAA

RE20574.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-RA 2293 CG8298-RA 143..2206 5..2068 10305 99.9 Plus
CG8298.a 3114 CG8298.a 143..2206 5..2068 10305 99.9 Plus
CG8298-RB 2214 CG8298-RB 254..2127 195..2068 9370 100 Plus
CG8298-RB 2214 CG8298-RB 10..200 5..195 940 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7876779..7878148 323..1692 6805 99.8 Plus
chr2R 21145070 chr2R 7878279..7878655 1691..2067 1885 100 Plus
chr2R 21145070 chr2R 7876351..7876541 5..195 940 99.5 Plus
chr2R 21145070 chr2R 7876595..7876724 195..324 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:40:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11989565..11990934 323..1692 6850 100 Plus
2R 25286936 2R 11991065..11991442 1691..2068 1890 100 Plus
2R 25286936 2R 11989137..11989327 5..195 940 99.5 Plus
2R 25286936 2R 11989381..11989510 195..324 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11990764..11992133 323..1692 6850 100 Plus
2R 25260384 2R 11992264..11992641 1691..2068 1890 100 Plus
2R 25260384 2R 11990336..11990526 5..195 940 99.4 Plus
2R 25260384 2R 11990580..11990709 195..324 650 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:18:43 has no hits.

RE20574.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:33 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7876596..7876724 196..324 100 -> Plus
chr2R 7876781..7878146 325..1690 99 -> Plus
chr2R 7876347..7876541 1..195 98 -> Plus
chr2R 7878279..7878655 1691..2067 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:04 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 118..1908 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 118..1908 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 118..1908 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:22 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 118..1908 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:43 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 1..1791 118..1908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:25 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 2..2067 2..2067 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 2..2067 2..2067 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 3..2069 1..2067 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 2..2067 2..2067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:43 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
CG8298-RA 3..2069 1..2067 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:33 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11989133..11989327 1..195 98 -> Plus
2R 11989382..11989510 196..324 100 -> Plus
2R 11989567..11990932 325..1690 100 -> Plus
2R 11991065..11991441 1691..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:33 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11989133..11989327 1..195 98 -> Plus
2R 11989382..11989510 196..324 100 -> Plus
2R 11989567..11990932 325..1690 100 -> Plus
2R 11991065..11991441 1691..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:33 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11989133..11989327 1..195 98 -> Plus
2R 11989382..11989510 196..324 100 -> Plus
2R 11989567..11990932 325..1690 100 -> Plus
2R 11991065..11991441 1691..2067 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:23 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7876638..7876832 1..195 98 -> Plus
arm_2R 7876887..7877015 196..324 100 -> Plus
arm_2R 7877072..7878437 325..1690 100 -> Plus
arm_2R 7878570..7878946 1691..2067 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:35 Download gff for RE20574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11990766..11992131 325..1690 100 -> Plus
2R 11992264..11992640 1691..2067 100   Plus
2R 11990332..11990526 1..195 98 -> Plus
2R 11990581..11990709 196..324 100 -> Plus

RE20574.pep Sequence

Translation from 117 to 1907

> RE20574.pep
MSNGRYGRFGALIGVACVSSTHCRFLIYSTKNAEVLAYHELKLRQIVHQA
GWMEYDPSEIWKNTQECIETAYKNLVILEINPRDIIAIGIVNQRGTSVLW
NLETGQPLHNAIGWSDCRSTPILKTLLHNVRHNVDYVRYRSGLPLSSCFS
ALKIRWLMDHVPAVATAIEENKCLFGTLDSWLLWNLTGGVEMGVHSTDIT
NAHYTSLMNVSTEQWDPKLCQFFRLPLNILPRIRSNSEIFGYVLEGPLHG
TPIAAMMGEQPASLLGQLCVKAGQNVCTLDDSCFVLLNTGREKLDSANGL
ITGIAHKLGEKAATNYTLEGAISNAGSTVTWLRDKLQINTEINSNDNVVE
SLNTFIGENSMISSSCSSSMLNAECGLAAKRSEITFVPAFHGMYAPYWRH
DARGIILGLTSQTTAENITQAAYEATGFQIFEVLQAFKRDTPNWDRSSMQ
PVLTFGGDYAENLHLVQFIADIIGYMLERPQTTSPAGLGVMITAGVTMKV
VSLEHAVKMYTPPTDVFSPTTTKNRRELLYKRWAYAVKKCLHWNNYETYE
ADIELFAQRELDPNLPVRRSVPGSIFLTTSFAMIILANYLKSNPLK*

RE20574.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12283-PA 596 GF12283-PA 1..595 1..595 2822 87.9 Plus
Dana\GF10570-PA 540 GF10570-PA 19..537 10..556 970 36.9 Plus
Dana\GF24830-PA 552 GF24830-PA 3..543 11..587 917 36.2 Plus
Dana\GF24829-PA 576 GF24829-PA 31..568 11..585 916 36.4 Plus
Dana\GF24265-PA 558 GF24265-PA 75..557 49..543 342 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20235-PA 596 GG20235-PA 1..596 1..596 2990 93.1 Plus
Dere\GG14680-PA 538 GG14680-PA 17..535 10..556 992 36.6 Plus
Dere\GG14819-PA 576 GG14819-PA 31..568 11..585 925 36.8 Plus
Dere\GG14901-PA 534 GG14901-PA 63..508 49..519 336 24.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20851-PA 596 GH20851-PA 1..595 1..595 2666 82.2 Plus
Dgri\GH15662-PA 536 GH15662-PA 15..533 10..556 958 37.1 Plus
Dgri\GH15761-PA 573 GH15761-PA 31..568 11..585 920 36 Plus
Dgri\GH14570-PA 513 GH14570-PA 12..512 18..543 384 25.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-PC 596 CG8298-PC 1..596 1..596 3141 100 Plus
CG8298-PA 596 CG8298-PA 1..596 1..596 3141 100 Plus
Gk1-PA 538 CG18374-PA 17..535 10..556 971 36.8 Plus
Gk2-PF 576 CG7995-PF 32..568 12..585 908 36.9 Plus
Gk2-PA 576 CG7995-PA 32..568 12..585 908 36.9 Plus
Gk2-PB 576 CG7995-PB 32..568 12..585 908 36.9 Plus
Gk2-PD 576 CG7995-PD 32..568 12..585 908 36.9 Plus
Gk2-PE 576 CG7995-PE 32..568 12..585 908 36.9 Plus
Gk2-PC 576 CG7995-PC 32..568 12..585 908 36.9 Plus
Gk1-PB 474 CG18374-PB 3..471 60..556 883 37.6 Plus
CG1271-PD 539 CG1271-PD 68..538 49..543 347 24.1 Plus
CG1271-PA 556 CG1271-PA 68..555 49..543 336 23.5 Plus
CG1271-PB 406 CG1271-PB 47..405 167..543 260 23.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20956-PA 596 GI20956-PA 1..595 1..595 2612 82 Plus
Dmoj\GI12707-PA 535 GI12707-PA 14..532 10..556 982 37.5 Plus
Dmoj\GI12540-PA 577 GI12540-PA 31..568 11..585 942 36.6 Plus
Dmoj\GI13897-PA 515 GI13897-PA 43..514 49..543 363 24.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10517-PA 596 GL10517-PA 1..595 1..595 2639 81.5 Plus
Dper\GL20743-PA 576 GL20743-PA 31..568 11..585 925 37.2 Plus
Dper\GL16108-PA 474 GL16108-PA 3..471 60..556 904 38.6 Plus
Dper\GL20781-PA 531 GL20781-PA 58..530 49..543 359 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20966-PA 596 GA20966-PA 1..595 1..595 2647 81.7 Plus
Dpse\GA14911-PA 532 GA14911-PA 11..529 10..556 992 37.7 Plus
Dpse\GA20751-PA 576 GA20751-PA 31..568 11..585 926 37.2 Plus
Dpse\GA11767-PA 531 GA11767-PA 58..530 49..543 362 25.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21324-PA 596 GM21324-PA 1..596 1..596 3160 97.8 Plus
Dsec\GM14296-PA 538 GM14296-PA 17..535 10..556 993 36.6 Plus
Dsec\GM14440-PA 576 GM14440-PA 31..568 11..585 920 36.8 Plus
Dsec\GM14527-PA 537 GM14527-PA 66..536 49..543 330 23.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10831-PA 596 GD10831-PA 1..596 1..596 3169 98.2 Plus
Dsim\GD13534-PA 538 GD13534-PA 17..535 10..556 993 36.6 Plus
Dsim\GD13642-PA 553 GD13642-PA 31..545 11..585 828 34.8 Plus
Dsim\GD13724-PA 538 GD13724-PA 67..537 49..543 337 24.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20677-PA 596 GJ20677-PA 1..595 1..595 2652 83 Plus
Dvir\GJ12691-PA 524 GJ12691-PA 3..521 10..556 948 37.1 Plus
Dvir\GJ16056-PA 577 GJ16056-PA 31..568 11..585 924 36.4 Plus
Dvir\GJ11752-PA 515 GJ11752-PA 44..514 49..543 370 25.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19496-PA 596 GK19496-PA 1..595 1..595 2629 80.7 Plus
Dwil\GK16855-PA 536 GK16855-PA 12..533 7..556 969 37.5 Plus
Dwil\GK16636-PA 576 GK16636-PA 31..568 11..585 918 36.6 Plus
Dwil\GK12322-PA 533 GK12322-PA 19..532 11..543 361 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12395-PA 596 GE12395-PA 1..596 1..596 3026 95.1 Plus
Dyak\GE21041-PA 538 GE21041-PA 17..535 10..556 1001 37.1 Plus
Dyak\GE21182-PA 576 GE21182-PA 31..568 11..585 924 36.8 Plus
Dyak\GE20355-PA 538 GE20355-PA 67..512 49..519 337 24.5 Plus

RE20574.hyp Sequence

Translation from 117 to 1907

> RE20574.hyp
MSNGRYGRFGALIGVACVSSTHCRFLIYSTKNAEVLAYHELKLRQIVHQA
GWMEYDPSEIWKNTQECIETAYKNLVILEINPRDIIAIGIVNQRGTSVLW
NLETGQPLHNAIGWSDCRSTPILKTLLHNVRHNVDYVRYRSGLPLSSCFS
ALKIRWLMDHVPAVATAIEENKCLFGTLDSWLLWNLTGGVEMGVHSTDIT
NAHYTSLMNVSTEQWDPKLCQFFRLPLNILPRIRSNSEIFGYVLEGPLHG
TPIAAMMGEQPASLLGQLCVKAGQNVCTLDDSCFVLLNTGREKLDSANGL
ITGIAHKLGEKAATNYTLEGAISNAGSTVTWLRDKLQINTEINSNDNVVE
SLNTFIGENSMISSSCSSSMLNAECGLAAKRSEITFVPAFHGMYAPYWRH
DARGIILGLTSQTTAENITQAAYEATGFQIFEVLQAFKRDTPNWDRSSMQ
PVLTFGGDYAENLHLVQFIADIIGYMLERPQTTSPAGLGVMITAGVTMKV
VSLEHAVKMYTPPTDVFSPTTTKNRRELLYKRWAYAVKKCLHWNNYETYE
ADIELFAQRELDPNLPVRRSVPGSIFLTTSFAMIILANYLKSNPLK*

RE20574.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG8298-PC 596 CG8298-PC 1..596 1..596 3141 100 Plus
CG8298-PA 596 CG8298-PA 1..596 1..596 3141 100 Plus
Gyk-PA 538 CG18374-PA 17..535 10..556 971 36.8 Plus
Gk-PF 576 CG7995-PF 32..568 12..585 908 36.9 Plus
Gk-PA 576 CG7995-PA 32..568 12..585 908 36.9 Plus