BDGP Sequence Production Resources |
Search the DGRC for RE20777
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 207 |
Well: | 77 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mms4-RA |
Protein status: | RE20777.pep: gold |
Preliminary Size: | 930 |
Sequenced Size: | 1142 |
Gene | Date | Evidence |
---|---|---|
CG12936 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12936 | 2002-06-10 | Blastp of sequenced clone |
CG12936 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12936 | 2008-04-29 | Release 5.5 accounting |
CG12936 | 2008-08-15 | Release 5.9 accounting |
CG12936 | 2008-12-18 | 5.12 accounting |
1142 bp (1142 high quality bases) assembled on 2002-06-10
GenBank Submission: AY071164
> RE20777.complete GTTTAGAATATTTGGCGGACTTTTGTACACAATGTCAAATAAAGTGGACA AGCTGCACAAGCAGGCTTTACGCGAACAACAGAAGCGTATTAAGCCCGGA GAATGTATGAAATATGTGCGGATGGTCATAGATGCCGGATTTCTGGGCAT TCCCGTGGGCCAGGAGGCACTGCAGCAATTGAATGCGACGGGTTTGAAGT ATGAAATAAGGAGCTTGCCCGTGAGCCACTGCATCCTGTGGGAACGCAAT GTTGGCCAGCAGACGATTGCTCTGGGCAGCAGTCCCACCGGCCTAGATGA AGCCTGGAAATCGGAAAACCAAGTGGTCCAGTGGCTATCCGAAAGCAGCT TCCAACGGGCTGTAAAGGATCAAAGTCTAGTTTGCCTGGGACCGCGCTTG CAGGACTCATTTCCGGACTGCCAGTACACCATTGCCCTGCCAACGCTCCG TCACAGCAAGCATGGCAGCTCATCCAGCCAGGACGCTCTGATTGAGATGC AGTTGCTCCAGGAGCTACACGTGGAACAGCTAGATCAACCCGAAAGCCAG GATCTAGTGGCCCTGCTGCAGCGCTATACAAAAGCAATAGCCGAAGCCCC CTATAAGAAGCAACGCAACGAGACATTGGGAGGCTTCAAGAAATACCTGG CCAACGACAAGAAGCAGTGCGTCCGTGTGGATCAGGGAAACGGATACGGA AGACTCTGGCAGCAGCATCTGAATCGACTGCCAATGGTCACGCTGGAAGT GGCCGAGTCCATAATAGCGCAGTATCCCTGTCCCAAGAAACTGATCGATC ATTTCTCCAGCGATCCACTGGCTGTCCAAAGTCTCGCCGATTTGAAGATC AAGCGATGCAATGGACCACAGCCTCTTCACACCGAGCGACGTATTGGAAA TGTTCTCAGCAACAAACTGTATACATTGTATACTGCCAAGGATCCCAATA CTCTAATTTAGAAAACTAAACTAAACTTTCTTAGCTTTAGAATCTGCTCA TATATTAGCTTCCTAAAGTATGTACAATTATAATTAGGTTTTAAGTTAAG ATCTAAGTATTTTACATTATTTTCTCATCGTATAAGGTATAATTTTAAAA ATCACAATGTTCCTATACACATAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6698634..6699752 | 4..1122 | 5505 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10811097..10812217 | 4..1124 | 5605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10812296..10813416 | 4..1124 | 5605 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2636..2766 | 1088..954 | 162 | 59.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6698631..6699752 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12936-RA | 1..930 | 32..961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 1..930 | 32..961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 1..930 | 32..961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12936-RA | 1..930 | 32..961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 1..930 | 32..961 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12936-RA | 1..1122 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 1..1122 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 17..1138 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12936-RA | 1..1122 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mms4-RA | 17..1138 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10811094..10812215 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10811094..10812215 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10811094..10812215 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6698599..6699720 | 1..1122 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10812293..10813414 | 1..1122 | 99 | Plus |
Translation from 0 to 960
> RE20777.hyp YRIFGGLLYTMSNKVDKLHKQALREQQKRIKPGECMKYVRMVIDAGFLGI PVGQEALQQLNATGLKYEIRSLPVSHCILWERNVGQQTIALGSSPTGLDE AWKSENQVVQWLSESSFQRAVKDQSLVCLGPRLQDSFPDCQYTIALPTLR HSKHGSSSSQDALIEMQLLQELHVEQLDQPESQDLVALLQRYTKAIAEAP YKKQRNETLGGFKKYLANDKKQCVRVDQGNGYGRLWQQHLNRLPMVTLEV AESIIAQYPCPKKLIDHFSSDPLAVQSLADLKIKRCNGPQPLHTERRIGN VLSNKLYTLYTAKDPNTLI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mms4-PA | 309 | CG12936-PA | 1..309 | 11..319 | 1609 | 100 | Plus |
Translation from 31 to 960
> RE20777.pep MSNKVDKLHKQALREQQKRIKPGECMKYVRMVIDAGFLGIPVGQEALQQL NATGLKYEIRSLPVSHCILWERNVGQQTIALGSSPTGLDEAWKSENQVVQ WLSESSFQRAVKDQSLVCLGPRLQDSFPDCQYTIALPTLRHSKHGSSSSQ DALIEMQLLQELHVEQLDQPESQDLVALLQRYTKAIAEAPYKKQRNETLG GFKKYLANDKKQCVRVDQGNGYGRLWQQHLNRLPMVTLEVAESIIAQYPC PKKLIDHFSSDPLAVQSLADLKIKRCNGPQPLHTERRIGNVLSNKLYTLY TAKDPNTLI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13776-PA | 305 | GF13776-PA | 1..305 | 1..309 | 1301 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20149-PA | 309 | GG20149-PA | 1..309 | 1..309 | 1562 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21271-PA | 303 | GH21271-PA | 1..303 | 1..309 | 971 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mms4-PA | 309 | CG12936-PA | 1..309 | 1..309 | 1609 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20397-PA | 306 | GI20397-PA | 1..306 | 1..309 | 1146 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17307-PA | 309 | GL17307-PA | 1..309 | 1..309 | 1201 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11922-PA | 309 | GA11922-PA | 1..309 | 1..309 | 1197 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21238-PA | 309 | GM21238-PA | 1..309 | 1..309 | 1606 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10756-PA | 309 | GD10756-PA | 1..309 | 1..309 | 1592 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22227-PA | 309 | GJ22227-PA | 1..309 | 1..309 | 1086 | 68.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19664-PA | 291 | GK19664-PA | 5..291 | 3..309 | 846 | 53.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12838-PA | 309 | GE12838-PA | 1..309 | 1..309 | 1508 | 90.9 | Plus |