Clone RE20784 Report

Search the DGRC for RE20784

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:207
Well:84
Vector:pFlc-1
Associated Gene/TranscriptCG15743-RA
Protein status:RE20784.pep: gold
Preliminary Size:1068
Sequenced Size:1653

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15743 2002-01-01 Sim4 clustering to Release 2
CG15743 2003-01-01 Sim4 clustering to Release 3
CG15743 2003-02-20 Blastp of sequenced clone
CG15743 2008-04-29 Release 5.5 accounting
CG15743 2008-08-15 Release 5.9 accounting
CG15743 2008-12-18 5.12 accounting

Clone Sequence Records

RE20784.complete Sequence

1653 bp (1653 high quality bases) assembled on 2003-02-20

GenBank Submission: BT004861

> RE20784.complete
GTTTTGGTTTTGTTTGGGGCTGTTTTTGGGGGAAAAAACGCGCAACGTGG
ACGTGAAATTGAATAGATCGGCACCGAGCATAGCTCACCTGTGCTCCCCC
CTCGCCACAAAGAGCAGAAAGAAACACCTGTGCCCCCGCCCCCGCCGTCC
ACACCCACCGACGCGCCATCATCAAGTGTTTTTCGTTTCAGTTCTTGCGA
GGGTTTTTTCAAGACAGCATCTGGGTTGATCTCAATGTGGTGATCTGGCA
AATACGACAGCACACTGATACACGCATAGATAGAATAGAATAGAATATAG
TATATAGTCTAGCATATAATAGATGAGCGAAGACAAGATGAACGGACGCT
CCATTCGCATCAACCGGCTGCCGGCCACCATTGTGGCCATCCTGCTGACC
TTTGTCCTGGTCTACTTCCTCAATTTCCATCAGGAGGAGCGGCCAGCGAT
CTACGGCATGCTGCGCAGTGAGAATCCCAGCCGCGTCAATCTACGCAAGA
TGCTAATAGCCGCCATACAGGCCGCCCAGCGTGGCGGTCTCGAGGTACTG
GACGTGGCCCGGAGTCGCCAGCTGAAGGAGCGCAGCAAGGGCAAGACGGA
CGAGGGCGTCAATGATCCCTTCACGGATGCCGACGGCCGGTCACATTGTG
TGATGAAGCAGGGCCTGCAGCGAATCTTTCCCCGCGTACAAATCTTCTCC
GAGGAGGACAAGGAGCACTGCAAGCAGGCACACGGCTATGATCTAGATCC
AACGGTCCTCCACGAGACCGCACAGATACCGGATGTGACCGTAAATGCCC
AGGATGTCACTGTTTGGGTAGATCCGTTGGATGCCACCAAGGAGTTCACC
GAGGAGCTATACGAGTACGTGACCACCATGGTGTGCGTGGCAGTGGCCGG
AAGGCCCATCATTGGCGTGATCCACAGCCCGTTCAATGGACAAACCGCGT
GGGCGTGGGTGGGCAACTCGATGTCTGAGTACCTATCCAATCTGCATCCG
CAGCATTCGCCAAACAATCAGGCGCCCATCATTACAGTCTCGCGATCCCA
CACGGCAGGTGCCAAGGATCTGGCGAGGGGCATCTTTGGCGAGAATGTCA
GCCTGCTGACGGCGGCGGGAGCTGGCTACAAGGTGCTCCAGGTGGTGGCC
AACAATGCCACCGCCTATTTGCACACGTCGAAGATCAAGAAGTGGGACAT
TTGCGCCGGCGATGCTATTCTGCACGCATTGGGCGGCACAATGACCACGC
TGAACGATCAGTTGATTAACTACGGACCAGAGGAATCGCCAGTCAATACG
GAGGGCCTGCTGGCCACCTTGGAGCAGCATGACGAGTACATGGACAAGCT
GTCCAAATATCGCGAGGCGCACAATGGCAAGCTGGCGTAGGGTCTGGTCA
GCTCCCCTACATTCTAACCCTTCCCGAGGAAATCCCCTCGCCCACATCGT
TTAGGCAGCATTCAAAAATAGCTTTAAGTTAAAAGAAGGAAACCTGTTTT
TCGTAATCTCAATGTTTGTTTGTGCGTGTGCTTCTTTTTTTTTGCATAAT
TACGTTGGTTGTGCGGCGGCGCGGCGGGGTCATGAACCCGGACCAAACCA
AACCGCCCAGTTGGCTCAAAATAAACTTATTTTAAACAAAAAAAAAAAAA
AAA

RE20784.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG15743-RA 1789 CG15743-RA 111..1745 3..1637 8175 100 Plus
CG15743.a 1963 CG15743.a 324..1958 3..1637 8175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13176845..13177691 3..851 4105 99.2 Plus
chrX 22417052 chrX 13177763..13178554 847..1637 3880 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13286031..13286879 3..851 4245 100 Plus
X 23542271 X 13286951..13287741 847..1637 3940 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13294129..13294977 3..851 4245 100 Plus
X 23527363 X 13295049..13295839 847..1637 3940 99.8 Plus
Blast to na_te.dros performed on 2019-03-16 12:00:12 has no hits.

RE20784.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:57 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13176844..13177691 1..851 99 -> Plus
chrX 13177768..13178554 852..1637 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:15 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 1..1068 323..1390 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:44 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 1..1068 323..1390 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:45:39 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 1..1068 323..1390 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:41:02 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 1..1068 323..1390 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:34 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 1..1068 323..1390 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:02:30 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 2..1636 3..1637 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:44 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 2..1636 3..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:45:39 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 15..1650 1..1637 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:41:02 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 2..1636 3..1637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:34 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
CG15743-RA 15..1650 1..1637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:57 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
X 13286030..13286879 1..851 99 -> Plus
X 13286956..13287741 852..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:57 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
X 13286030..13286879 1..851 99 -> Plus
X 13286956..13287741 852..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:57 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
X 13286030..13286879 1..851 99 -> Plus
X 13286956..13287741 852..1637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:45:39 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13180063..13180912 1..851 99 -> Plus
arm_X 13180989..13181774 852..1637 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:11:30 Download gff for RE20784.complete
Subject Subject Range Query Range Percent Splice Strand
X 13294128..13294977 1..851 99 -> Plus
X 13295054..13295839 852..1637 100   Plus

RE20784.pep Sequence

Translation from 322 to 1389

> RE20784.pep
MSEDKMNGRSIRINRLPATIVAILLTFVLVYFLNFHQEERPAIYGMLRSE
NPSRVNLRKMLIAAIQAAQRGGLEVLDVARSRQLKERSKGKTDEGVNDPF
TDADGRSHCVMKQGLQRIFPRVQIFSEEDKEHCKQAHGYDLDPTVLHETA
QIPDVTVNAQDVTVWVDPLDATKEFTEELYEYVTTMVCVAVAGRPIIGVI
HSPFNGQTAWAWVGNSMSEYLSNLHPQHSPNNQAPIITVSRSHTAGAKDL
ARGIFGENVSLLTAAGAGYKVLQVVANNATAYLHTSKIKKWDICAGDAIL
HALGGTMTTLNDQLINYGPEESPVNTEGLLATLEQHDEYMDKLSKYREAH
NGKLA*

RE20784.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20869-PA 352 GF20869-PA 1..352 6..355 1741 90.9 Plus
Dana\GF18667-PA 304 GF18667-PA 6..304 57..353 371 32.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17765-PA 355 GG17765-PA 1..355 1..355 1852 96.6 Plus
Dere\GG11697-PA 306 GG11697-PA 8..295 57..343 357 33.1 Plus
Dere\GG19895-PA 374 GG19895-PA 141..318 146..305 153 29.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12318-PA 348 GH12318-PA 1..348 6..355 1515 79.7 Plus
Dgri\GH19967-PA 306 GH19967-PA 8..295 57..343 364 32.4 Plus
Dgri\GH14420-PA 374 GH14420-PA 141..324 152..314 170 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15743-PB 355 CG15743-PB 1..355 1..355 1846 100 Plus
CG15743-PC 355 CG15743-PC 1..355 1..355 1846 100 Plus
CG15743-PA 355 CG15743-PA 1..355 1..355 1846 100 Plus
CG7789-PA 306 CG7789-PA 8..295 57..343 360 33.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21462-PA 348 GI21462-PA 1..347 6..354 1497 78.8 Plus
Dmoj\GI22044-PA 308 GI22044-PA 8..295 57..343 372 32.8 Plus
Dmoj\GI10045-PA 372 GI10045-PA 141..371 152..345 163 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13412-PA 210 GL13412-PA 8..210 2..204 992 89.2 Plus
Dper\GL13413-PA 139 GL13413-PA 1..138 217..354 641 87 Plus
Dper\GL23516-PA 305 GL23516-PA 8..302 57..349 371 34 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13929-PA 350 GA13929-PA 1..349 6..354 1727 90.3 Plus
Dpse\GA20589-PA 305 GA20589-PA 8..302 57..349 374 34 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11612-PA 355 GM11612-PA 1..355 1..355 1895 98.6 Plus
Dsec\GM12826-PA 306 GM12826-PA 8..295 57..343 358 33.1 Plus
Dsec\GM24144-PA 373 GM24144-PA 103..317 126..305 155 28.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17111-PA 569 GD17111-PA 1..177 1..177 931 97.2 Plus
Dsim\GD21468-PA 167 GD21468-PA 8..167 57..211 204 32.1 Plus
Dsim\GD21469-PA 138 GD21469-PA 19..127 236..343 174 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16483-PA 348 GJ16483-PA 1..347 6..354 1573 81.9 Plus
Dvir\GJ24097-PA 306 GJ24097-PA 8..295 57..343 360 31.8 Plus
Dvir\GJ22570-PA 376 GJ22570-PA 148..341 157..322 156 27.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25305-PA 349 GK25305-PA 1..347 6..353 1628 86 Plus
Dwil\GK11929-PA 313 GK11929-PA 10..302 57..343 333 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17055-PA 355 GE17055-PA 1..355 1..355 1896 98.9 Plus
Dyak\GE23887-PA 306 GE23887-PA 8..295 57..343 361 33.4 Plus
Dyak\GE26306-PA 488 GE26306-PA 255..432 146..305 152 29.9 Plus

RE20784.hyp Sequence

Translation from 322 to 1389

> RE20784.hyp
MSEDKMNGRSIRINRLPATIVAILLTFVLVYFLNFHQEERPAIYGMLRSE
NPSRVNLRKMLIAAIQAAQRGGLEVLDVARSRQLKERSKGKTDEGVNDPF
TDADGRSHCVMKQGLQRIFPRVQIFSEEDKEHCKQAHGYDLDPTVLHETA
QIPDVTVNAQDVTVWVDPLDATKEFTEELYEYVTTMVCVAVAGRPIIGVI
HSPFNGQTAWAWVGNSMSEYLSNLHPQHSPNNQAPIITVSRSHTAGAKDL
ARGIFGENVSLLTAAGAGYKVLQVVANNATAYLHTSKIKKWDICAGDAIL
HALGGTMTTLNDQLINYGPEESPVNTEGLLATLEQHDEYMDKLSKYREAH
NGKLA*

RE20784.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15743-PB 355 CG15743-PB 1..355 1..355 1846 100 Plus
CG15743-PC 355 CG15743-PC 1..355 1..355 1846 100 Plus
CG15743-PA 355 CG15743-PA 1..355 1..355 1846 100 Plus
CG7789-PA 306 CG7789-PA 8..295 57..343 360 33.1 Plus