Clone RE20857 Report

Search the DGRC for RE20857

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:208
Well:57
Vector:pFlc-1
Associated Gene/TranscriptCG12134-RB
Protein status:RE20857.pep: gold
Preliminary Size:1578
Sequenced Size:1403

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12134 2002-10-04 Blastp of sequenced clone
CG12134 2003-01-01 Sim4 clustering to Release 3
CG12134 2008-04-29 Release 5.5 accounting
CG12134 2008-08-15 Release 5.9 accounting
CG12134 2008-12-18 5.12 accounting

Clone Sequence Records

RE20857.complete Sequence

1403 bp (1403 high quality bases) assembled on 2002-10-04

GenBank Submission: BT001570

> RE20857.complete
GAATAGTCAGCACTGTCGTCATTTAATGCACGTGCGGCAAATTAAAAATA
GACAAGAATGAGCGACTTTAACAAATATTGCGAAGGTTTTATTAGCTATA
AGCCTGCCAAGACGGCCTGATTAATCCGTACATCCTGCAGAAGCTGCGAG
GGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAGGACA
CTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAAGCCG
CAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCCTGGC
CGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCAGCAG
TGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGC
TATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCG
TTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCT
ACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAG
TACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTT
CGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTC
ACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATG
GGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCA
TGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAA
ACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACC
TTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTA
CGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCT
ACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTT
ACGGCGGCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGC
CCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCA
ACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTC
CAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCT
TTTCGATTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTG
TTACGGTTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAA
CTGAAGGCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATTAAAT
GTGTATTTATGTTTTAAATAAAGGTTTTCTAAATACGAAAAAAAAAAAAA
AAA

RE20857.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-RB 1588 CG12134-RB 192..1581 1..1390 6950 100 Plus
CG12134-RA 1533 CG12134-RA 280..1531 139..1390 6260 100 Plus
CG12134.b 1501 CG12134.b 244..1494 140..1390 6255 100 Plus
CG12134-RA 1533 CG12134-RA 197..281 1..85 425 100 Plus
CG12134.b 1501 CG12134.b 163..247 1..85 425 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5858854..5859960 1..1107 5445 99.5 Plus
chr2R 21145070 chr2R 5860017..5860297 1107..1387 1390 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9971337..9972443 1..1107 5535 100 Plus
2R 25286936 2R 9972500..9972783 1107..1390 1420 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9972536..9973642 1..1107 5535 100 Plus
2R 25260384 2R 9973699..9973982 1107..1390 1420 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:48:06 has no hits.

RE20857.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:48:42 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5858854..5859960 1..1107 99 -> Plus
chr2R 5860018..5860297 1108..1387 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:18 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 27..1236 139..1348 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:12:38 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 27..1236 139..1348 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:42:41 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 27..1236 139..1348 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:03:30 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 27..1236 139..1348 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:51:24 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RA 27..1236 139..1348 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:34:58 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 1..1387 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:12:38 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 1..1387 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:41 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 195..1581 1..1387 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:03:31 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 1..1387 1..1387 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:51:24 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
CG12134-RB 195..1581 1..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:42 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971337..9972443 1..1107 100 -> Plus
2R 9972501..9972780 1108..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:42 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971337..9972443 1..1107 100 -> Plus
2R 9972501..9972780 1108..1387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:48:42 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9971337..9972443 1..1107 100 -> Plus
2R 9972501..9972780 1108..1387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:41 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5858842..5859948 1..1107 100 -> Plus
arm_2R 5860006..5860285 1108..1387 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:17 Download gff for RE20857.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9972536..9973642 1..1107 100 -> Plus
2R 9973700..9973979 1108..1387 100   Plus

RE20857.hyp Sequence

Translation from 322 to 1347

> RE20857.hyp
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*

RE20857.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PB 341 CG12134-PB 1..341 1..341 1778 100 Plus
CG12134-PA 411 CG12134-PA 71..411 1..341 1778 100 Plus

RE20857.pep Sequence

Translation from 322 to 1347

> RE20857.pep
MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH
NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR
IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL
ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC
VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG
VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL
LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*

RE20857.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13567-PA 412 GF13567-PA 71..412 1..341 1287 70.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24125-PA 411 GG24125-PA 71..411 1..341 1734 92.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20350-PA 252 GH20350-PA 1..252 90..341 926 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12134-PB 341 CG12134-PB 1..341 1..341 1778 100 Plus
CG12134-PA 411 CG12134-PA 71..411 1..341 1778 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14544-PA 411 GI14544-PA 72..411 1..341 950 53.2 Plus
Dmoj\GI20019-PA 411 GI20019-PA 72..411 1..341 950 53.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16766-PA 411 GL16766-PA 71..411 1..341 1255 68 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11428-PA 411 GA11428-PA 71..411 1..341 1244 67.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11121-PA 411 GM11121-PA 71..411 1..341 1799 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10705-PA 411 GD10705-PA 71..411 1..341 1805 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21267-PA 417 GJ21267-PA 71..417 1..341 1199 63.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21663-PA 410 GK21663-PA 74..410 1..341 1142 62.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19321-PA 411 GE19321-PA 71..411 1..341 1725 92.7 Plus