BDGP Sequence Production Resources |
Search the DGRC for RE20857
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 208 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12134-RB |
Protein status: | RE20857.pep: gold |
Preliminary Size: | 1578 |
Sequenced Size: | 1403 |
Gene | Date | Evidence |
---|---|---|
CG12134 | 2002-10-04 | Blastp of sequenced clone |
CG12134 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12134 | 2008-04-29 | Release 5.5 accounting |
CG12134 | 2008-08-15 | Release 5.9 accounting |
CG12134 | 2008-12-18 | 5.12 accounting |
1403 bp (1403 high quality bases) assembled on 2002-10-04
GenBank Submission: BT001570
> RE20857.complete GAATAGTCAGCACTGTCGTCATTTAATGCACGTGCGGCAAATTAAAAATA GACAAGAATGAGCGACTTTAACAAATATTGCGAAGGTTTTATTAGCTATA AGCCTGCCAAGACGGCCTGATTAATCCGTACATCCTGCAGAAGCTGCGAG GGAAGCGCTTCCGGACTCGGAAGACGAGGAAGACATCGGCGATGAGGACA CTTGTAGCGCACAGGATCTTGCCGCCGAATTCCAGCTGAAGTACAAGCCG CAGGACGAAGTCAGTGTGTCCTTGCAGCGTGAATATGTTCTTAGCCTGGC CGCAGATCAAGGATTCTCACGGATGGCCGCCGGACTGTCCAATTCAGCAG TGCATATCTATAATTTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGC TATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCG TTTCCTCGACGAAGGACCACACAACATCCTGGTCGGCACCACCGATGGCT ACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAG TACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTT CGACAGAAACGCCAACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTC ACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATG GGCGTCTACTTCGAAAGCCATGAGGACGATATCACCTCGTTGCGGTTCCA TGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAA ACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAGCACTGCTTAACACC TTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTA CGACAAGGACATCATATCCTGCGTCACGACCACTGGCGATTTCAAGAGCT ACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTT ACGGCGGCAATAAGGAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGC CCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCA ACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCGAAGAACAGCCTC CAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCT TTTCGATTCAAAGAGAAGTTTACTTTTTACAGGCGGAGAATCCGGCATTG TTACGGTTTGGGCACAGGACGCAAGTGGAACGGCGTTCAGCAGTGAAAAA CTGAAGGCCAGGAAGGAGAAGAAATCACGCAAGCAAGCGCCATATTAAAT GTGTATTTATGTTTTAAATAAAGGTTTTCTAAATACGAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12134-RB | 1588 | CG12134-RB | 192..1581 | 1..1390 | 6950 | 100 | Plus |
CG12134-RA | 1533 | CG12134-RA | 280..1531 | 139..1390 | 6260 | 100 | Plus |
CG12134.b | 1501 | CG12134.b | 244..1494 | 140..1390 | 6255 | 100 | Plus |
CG12134-RA | 1533 | CG12134-RA | 197..281 | 1..85 | 425 | 100 | Plus |
CG12134.b | 1501 | CG12134.b | 163..247 | 1..85 | 425 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5858854..5859960 | 1..1107 | 99 | -> | Plus |
chr2R | 5860018..5860297 | 1108..1387 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RA | 27..1236 | 139..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RA | 27..1236 | 139..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RA | 27..1236 | 139..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RA | 27..1236 | 139..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RA | 27..1236 | 139..1348 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RB | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RB | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RB | 195..1581 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RB | 1..1387 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12134-RB | 195..1581 | 1..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9971337..9972443 | 1..1107 | 100 | -> | Plus |
2R | 9972501..9972780 | 1108..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9971337..9972443 | 1..1107 | 100 | -> | Plus |
2R | 9972501..9972780 | 1108..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9971337..9972443 | 1..1107 | 100 | -> | Plus |
2R | 9972501..9972780 | 1108..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5858842..5859948 | 1..1107 | 100 | -> | Plus |
arm_2R | 5860006..5860285 | 1108..1387 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9972536..9973642 | 1..1107 | 100 | -> | Plus |
2R | 9973700..9973979 | 1108..1387 | 100 | Plus |
Translation from 322 to 1347
> RE20857.hyp MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*
Translation from 322 to 1347
> RE20857.pep MAAGLSNSAVHIYNLDSGAGKLENFSYLPPTDSPQSVSICGVRFLDEGPH NILVGTTDGYVRLYDLRLRGEQARFKYTQHPNVPPVPKSLSCFDRNANGR IICCGTEQFHSNAFLVFFDVRERQQMGVYFESHEDDITSLRFHAQNPDLL ATGSVDGLVNVFDVKEPDEDEALLNTFNTESSVARLAWHRNVYDKDIISC VTTTGDFKSYECEEGDEVASFERPDVTAAIRRKKAANFNLINAHNQEDGG VFLLAGTNFNKGEILRSVSVTSKNSLQPLANFQGNKQIVRDSLFDSKRSL LFTGGESGIVTVWAQDASGTAFSSEKLKARKEKKSRKQAPY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13567-PA | 412 | GF13567-PA | 71..412 | 1..341 | 1287 | 70.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24125-PA | 411 | GG24125-PA | 71..411 | 1..341 | 1734 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20350-PA | 252 | GH20350-PA | 1..252 | 90..341 | 926 | 64.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12134-PB | 341 | CG12134-PB | 1..341 | 1..341 | 1778 | 100 | Plus |
CG12134-PA | 411 | CG12134-PA | 71..411 | 1..341 | 1778 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14544-PA | 411 | GI14544-PA | 72..411 | 1..341 | 950 | 53.2 | Plus |
Dmoj\GI20019-PA | 411 | GI20019-PA | 72..411 | 1..341 | 950 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16766-PA | 411 | GL16766-PA | 71..411 | 1..341 | 1255 | 68 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11428-PA | 411 | GA11428-PA | 71..411 | 1..341 | 1244 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11121-PA | 411 | GM11121-PA | 71..411 | 1..341 | 1799 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10705-PA | 411 | GD10705-PA | 71..411 | 1..341 | 1805 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21267-PA | 417 | GJ21267-PA | 71..417 | 1..341 | 1199 | 63.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21663-PA | 410 | GK21663-PA | 74..410 | 1..341 | 1142 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19321-PA | 411 | GE19321-PA | 71..411 | 1..341 | 1725 | 92.7 | Plus |