BDGP Sequence Production Resources |
Search the DGRC for RE20876
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 208 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | neur-RC |
Protein status: | RE20876.pep: gold |
Sequenced Size: | 3396 |
Gene | Date | Evidence |
---|---|---|
CG11988 | 2003-02-13 | Blastp of sequenced clone |
neur | 2008-04-29 | Release 5.5 accounting |
neur | 2008-08-15 | Release 5.9 accounting |
neur | 2008-12-18 | 5.12 accounting |
3396 bp (3396 high quality bases) assembled on 2003-02-13
GenBank Submission: BT003772
> RE20876.complete ACTAACGCGGTCACACTAAAAAAAAGCCTTGCGACCGGCAGCTCCATCCA AATAACAATTAGGCAAAGCTTTAAAATGCATCGCATTTAACGCCTATGAT TCCGGAAGTGAGCTAGCCTGCCAATAGCACACGATCGGCTCACGGTGCAC ATAATATCGAGCTTATGCGAGGGCTGGTCTACGTGAAAATTCAATGCCAA AGAAGCTGTGTGTGTCCTAGTTGTTGTGGCTGTTGTTTCTTGTGCCTTTC GGGAAGCGAAACACGCAATTTGTGATTTTAATTAAGCAATGGGTCAGTCG GCTGGTAAAATAGTTCGCCGCTCACCCTCTTCATGTCCTGGCCCCAACAA CCTGCCTCCGCTGCAATTCCACTCCGTACATGGCGACAACATCCGAATTT CAAGGGACGGAACCCTGGCCCGTCGCTTTGAGAGCTTCTGCAGGGCCATC ACCTTTTCAGCGCGTCCGGTTCGCATCAACGAGAGGATCTGCGTGAAGTT TGCTGAGATCTCGAACAACTGGAACGGTGGAATTCGCTTTGGATTCACCA GCAACGATCCTGTAACGCTGGAGGGAACGCTGCCCAAGTACGCCTGTCCG GATCTGACCAACAGGCCTGGCTTCTGGGCCAAGGCTCTGCACGAGCAGTA CTGCGAGAAGGACAACATACTTTACTACTATGTCAATGGAGCTGGCGATG TGATCTATGGTATAAACAACGAGGAGAAGGGTGTGATACTGACCGGCATC GATACGAGAAGCCTGCTGTGGACGGTGATCGATATCTATGGCAACTGCAC GGGCATTGAGTTTCTCGATTCTCGCATTTACATGTACCAGCAGCAGCCAG CGGCTATACCAATGGCCACTGTGCCCGCCCAGCAACAGCAAATGCCCCAG CCAGCTGCCAATGCCTCCTCCGCCCTGAATTCCCATCACCCGCATCAGCA GTCGAGGAGATCCCTGCCAGGACACACTGCGGCCATCGAGCACGATCTGG AGCGCCATGTGATGCCGTCCCTGCAATCCCTGCACTTGGCAGGAAACGGT GGAAGCGTGGCTAGCGTAGAACAGGCGGCCATTGCTCATGATTTGGCCAA TGGACTGCCTCCTCTGCGCTACAATGCCAACGGACGACTGATTCCAGTGC CCTTCCACAACACCAAGGGCCGGAATGTGCGGCTCTCGCAGGATCGCTTT GTGGCTTCTCGTACGGAATCTGACTTCTGCCAGGGATATGTGTTCACTGC CCGTCCCATTCGCATTGGTGAGAAGCTGATTGTGCAGGTCCTGAAAACGG AACAGATGTACGTGGGTGCCTTGGCTTTGGGTCTGACCTCCTGCAATCCG GCCATGTTGCAGCCCAATGATTTGCCCAATGATTCGGATTTCCTGCTCGA TCGCCCCGAGTACTGGGTGGTGAGCAAGGATATTGCAGCTGCTCCTCAGC GCGGCGATGAGATTGCCTTCTTCGTGGCGCCCAACGGTGAAGTGAGCATC AGCAAGAACAACGGACCAGCTGTGGTGGTGATGCATGTGGACCAGTCCCT CCAGCTGTGGGCCTTCCTGGATGTCTACGGCTCGACGCAGTCTCTGAGGA TGTTCCGCCAGCAGTTACCCAACATGGTTGCGTATCCATCGCAGCCGCAG GTCAATGTGAATGCCAGCAGCTCGTCCGCCTGCAACGCTGCCTCCACGTC CCGCATGCTGCCCATGACCGAGTCGATGAGCAGTCTGAATGCCGGAGCCA CTGCCAAGCTGTTGCATCATCCCTCGCAGCTGAGCGTAGCCCAGAGTACG AGCACTTTGGCCTCAGCTGGCGGAGTCAATGGCAGCCGCATGATCAGCAT GCCCTCCAACGGAGATATTCTCCAGATCCAGCCGAATGGTGGTGGCACCG TTCTGGTGGTCAACCTGCCACCTGCTAGCAGCTCGCACGATATAAACGGC CAACTCGCGGCCAGGCCAACGGCCACGGTAACCTCCAGCGGTGTTCTGGC CGGAGCCTGCTCCAGCGGCACCCTTATCAGCACCACCAGCAGCCAGTACA TCGAGCAGCCCATTGCCAATAGCACAAATAATGCGGCCAACAAGTGGAAG GACAGCCTGAGCGACCAGCAGAGCACCGATTCGAGTGCCGAATGCACCAT CTGCTACGAGAATCCCATCGACTCGGTGCTGTACATGTGCGGACACATGT GCATGTGCTACGACTGCGCCATCGAGCAGTGGCGCGGAGTGGGTGGTGGC CAGTGCCCACTGTGCCGGGCGGTGATCCGGGACGTCATCCGCACCTACAC CACGTAGAAAGGTCGCGGGCGTTTCCTAGCCAAGCAACATTTACTCGCAA TCAAACCTACTAAAGCTACACATTATACCATACACACAAGTTGTTGCATT TTAAACGCAATTGAGCGCAAAGAATATTATATTGGAGAGATAGGCATTAT TTTTGCAGACTAAAGATTAGATAGTTTACGCAGCTAGATTAGTGTATGAA ACTATCAACTAATTTATCACACGTATGTTTAATTTTTTTGTGATGTTATA AGTAAGTGCGCCCCAGAGCCAAAACTATGTATTGTTCAATCCAACAAAGA TATCTTCGTTTTTTCAATTTTTTTCAAACCTTGAATCGCCCATTTGTGCG TTGTATACTGAAAAACCAAAGTATTGTATAGGAGTTTATAGTATTTTGAA TTTAAATTGGAATTAATTGAAAGTTGTTGCAAATTTACTTAGTTTTTCTC TATGTCTAAATTCCAAACGATGTGCAAAATTAACAAACACAAACTACAAG GATTCTTTATTTGGCGATTAATCATTTTGGTGCTAAATGTTTTGAAAGGC AAAATAAAATTGTTAACGGATTTGAAAAGTTATGTTTAAGCTTGCAGCAA CTACGAATGACCTTAATTTGATATGAAATCACAAGAAGCAAATATTGACT ACTTTCCAGCAAGGAAATGGATATCGACGCAACTCAAATAAGTTTGCAGC ACAAATTAATGAACAAAGATTGATCAGAAAACACTTATGCACGTAAACCA AAATAGAAAACTGCAAGAGCGTGTTTGTTTAAAGTTAATATTAGTCTAGC CCTAAGTACTTAAGTTAATTTCTAGTCAACGAATTATGCTGAAGTTAAAT TTAAACCGGACTTCATCCAACAAAGACACCACAAAAAAGACGTATTAAGC ACGCTAAGCTATTTTAATGAAGCCGCATTTTAAATTACACTTAAGTAGTG CACGTATTTTAATGGAGACTTAAATATATTTAACTATAAACATAGAACAA AAGACTTGTATGTTGTACCAACAGCTTGAATGAAATATGGAAAATGGAAT GCCCATCTAAATAAACCATGCAGTTAGAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4847998..4849741 | 2055..312 | 8675 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 4846617..4847940 | 3377..2054 | 6560 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 4865037..4865348 | 313..1 | 1515 | 99.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9022104..9023847 | 2055..312 | 8720 | 100 | Minus |
3R | 32079331 | 3R | 9020719..9022046 | 3381..2054 | 6625 | 99.9 | Minus |
3R | 32079331 | 3R | 9039155..9039467 | 313..1 | 1565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 8762935..8764678 | 2055..312 | 8720 | 100 | Minus |
3R | 31820162 | 3R | 8761550..8762877 | 3381..2054 | 6625 | 99.9 | Minus |
3R | 31820162 | 3R | 8779986..8780298 | 313..1 | 1565 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7896..7947 | 2756..2707 | 147 | 78.8 | Minus |
Tirant | 8526 | Tirant TIRANT 8526bp | 6936..7071 | 2925..3060 | 139 | 60.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 2749..2865 | 2940..3051 | 121 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2613 | 2007..2115 | 120 | 59.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4846617..4847938 | 2056..3377 | 99 | <- | Minus |
chr3R | 4847998..4849739 | 314..2055 | 99 | <- | Minus |
chr3R | 4865037..4865348 | 1..313 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RE | 1..2019 | 289..2307 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RE | 1..2019 | 289..2307 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 1..2019 | 289..2307 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 1..2019 | 289..2307 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 1..2019 | 289..2307 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RE | 1..3377 | 1..3377 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RE | 1..3377 | 1..3377 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 5..3381 | 1..3377 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 1..3377 | 1..3377 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
neur-RC | 5..3381 | 1..3377 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9020723..9022044 | 2056..3377 | 99 | <- | Minus |
3R | 9022104..9023845 | 314..2055 | 100 | <- | Minus |
3R | 9039155..9039467 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9020723..9022044 | 2056..3377 | 99 | <- | Minus |
3R | 9022104..9023845 | 314..2055 | 100 | <- | Minus |
3R | 9039155..9039467 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9020723..9022044 | 2056..3377 | 99 | <- | Minus |
3R | 9022104..9023845 | 314..2055 | 100 | <- | Minus |
3R | 9039155..9039467 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4846445..4847766 | 2056..3377 | 99 | <- | Minus |
arm_3R | 4847826..4849567 | 314..2055 | 100 | <- | Minus |
arm_3R | 4864877..4865189 | 1..313 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8761554..8762875 | 2056..3377 | 99 | <- | Minus |
3R | 8762935..8764676 | 314..2055 | 100 | <- | Minus |
3R | 8779986..8780298 | 1..313 | 100 | Minus |
Translation from 288 to 2306
> RE20876.pep MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG VGGGQCPLCRAVIRDVIRTYTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18432-PA | 759 | GF18432-PA | 93..759 | 8..672 | 3265 | 93 | Plus |
Dana\GF11573-PA | 312 | GF11573-PA | 53..143 | 26..113 | 166 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17398-PA | 671 | GG17398-PA | 1..671 | 1..672 | 3554 | 98.4 | Plus |
Dere\GG23004-PA | 320 | GG23004-PA | 62..152 | 26..113 | 166 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18220-PA | 671 | GH18220-PA | 1..671 | 1..672 | 2813 | 81.3 | Plus |
Dgri\GH20356-PA | 311 | GH20356-PA | 52..143 | 25..113 | 174 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
neur-PE | 672 | CG11988-PE | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PC | 672 | CG11988-PC | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PD | 671 | CG11988-PD | 1..671 | 1..672 | 3511 | 99.9 | Plus |
neur-PA | 754 | CG11988-PA | 90..754 | 8..672 | 3491 | 99.8 | Plus |
neur-PB | 753 | CG11988-PB | 90..753 | 8..672 | 3474 | 99.7 | Plus |
CG3894-PC | 322 | CG3894-PC | 64..154 | 26..113 | 160 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10174-PA | 727 | GI10174-PA | 72..727 | 8..672 | 2750 | 80.1 | Plus |
Dmoj\GI11543-PA | 1782 | GI11543-PA | 13..407 | 27..433 | 177 | 22.5 | Plus |
Dmoj\GI20025-PA | 310 | GI20025-PA | 51..142 | 25..113 | 174 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12492-PA | 763 | GL12492-PA | 89..763 | 8..672 | 3029 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11314-PA | 765 | GA11314-PA | 91..765 | 8..672 | 2987 | 87.1 | Plus |
Dpse\GA22479-PA | 160 | GA22479-PA | 40..130 | 26..113 | 170 | 36.3 | Plus |
Dpse\GA17757-PA | 297 | GA17757-PA | 40..130 | 26..113 | 170 | 36.3 | Plus |
Dpse\GA22480-PA | 296 | GA22480-PA | 40..130 | 26..113 | 170 | 36.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26288-PA | 671 | GM26288-PA | 1..671 | 1..672 | 3570 | 99 | Plus |
Dsec\GM11897-PA | 322 | GM11897-PA | 64..154 | 26..113 | 165 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20824-PA | 671 | GD20824-PA | 1..671 | 1..672 | 3570 | 99 | Plus |
Dsim\GD11895-PA | 322 | GD11895-PA | 64..154 | 26..113 | 165 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\neur-PA | 720 | GJ10875-PA | 52..720 | 8..672 | 2850 | 83.1 | Plus |
Dvir\GJ21273-PA | 310 | GJ21273-PA | 51..142 | 25..113 | 174 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11419-PA | 767 | GK11419-PA | 82..767 | 8..672 | 3006 | 84.7 | Plus |
Dwil\GK17149-PA | 1916 | GK17149-PA | 16..403 | 27..433 | 181 | 24.3 | Plus |
Dwil\GK21668-PA | 309 | GK21668-PA | 46..140 | 26..117 | 171 | 38.9 | Plus |
Dwil\GK17149-PA | 1916 | GK17149-PA | 245..410 | 25..177 | 159 | 26.6 | Plus |
Translation from 288 to 2306
> RE20876.hyp MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG VGGGQCPLCRAVIRDVIRTYTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
neur-PE | 672 | CG11988-PE | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PC | 672 | CG11988-PC | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PD | 671 | CG11988-PD | 1..671 | 1..672 | 3511 | 99.9 | Plus |
neur-PA | 754 | CG11988-PA | 90..754 | 8..672 | 3491 | 99.8 | Plus |
neur-PB | 753 | CG11988-PB | 90..753 | 8..672 | 3474 | 99.7 | Plus |