Clone RE20876 Report

Search the DGRC for RE20876

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:208
Well:76
Vector:pFlc-1
Associated Gene/Transcriptneur-RC
Protein status:RE20876.pep: gold
Sequenced Size:3396

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11988 2003-02-13 Blastp of sequenced clone
neur 2008-04-29 Release 5.5 accounting
neur 2008-08-15 Release 5.9 accounting
neur 2008-12-18 5.12 accounting

Clone Sequence Records

RE20876.complete Sequence

3396 bp (3396 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003772

> RE20876.complete
ACTAACGCGGTCACACTAAAAAAAAGCCTTGCGACCGGCAGCTCCATCCA
AATAACAATTAGGCAAAGCTTTAAAATGCATCGCATTTAACGCCTATGAT
TCCGGAAGTGAGCTAGCCTGCCAATAGCACACGATCGGCTCACGGTGCAC
ATAATATCGAGCTTATGCGAGGGCTGGTCTACGTGAAAATTCAATGCCAA
AGAAGCTGTGTGTGTCCTAGTTGTTGTGGCTGTTGTTTCTTGTGCCTTTC
GGGAAGCGAAACACGCAATTTGTGATTTTAATTAAGCAATGGGTCAGTCG
GCTGGTAAAATAGTTCGCCGCTCACCCTCTTCATGTCCTGGCCCCAACAA
CCTGCCTCCGCTGCAATTCCACTCCGTACATGGCGACAACATCCGAATTT
CAAGGGACGGAACCCTGGCCCGTCGCTTTGAGAGCTTCTGCAGGGCCATC
ACCTTTTCAGCGCGTCCGGTTCGCATCAACGAGAGGATCTGCGTGAAGTT
TGCTGAGATCTCGAACAACTGGAACGGTGGAATTCGCTTTGGATTCACCA
GCAACGATCCTGTAACGCTGGAGGGAACGCTGCCCAAGTACGCCTGTCCG
GATCTGACCAACAGGCCTGGCTTCTGGGCCAAGGCTCTGCACGAGCAGTA
CTGCGAGAAGGACAACATACTTTACTACTATGTCAATGGAGCTGGCGATG
TGATCTATGGTATAAACAACGAGGAGAAGGGTGTGATACTGACCGGCATC
GATACGAGAAGCCTGCTGTGGACGGTGATCGATATCTATGGCAACTGCAC
GGGCATTGAGTTTCTCGATTCTCGCATTTACATGTACCAGCAGCAGCCAG
CGGCTATACCAATGGCCACTGTGCCCGCCCAGCAACAGCAAATGCCCCAG
CCAGCTGCCAATGCCTCCTCCGCCCTGAATTCCCATCACCCGCATCAGCA
GTCGAGGAGATCCCTGCCAGGACACACTGCGGCCATCGAGCACGATCTGG
AGCGCCATGTGATGCCGTCCCTGCAATCCCTGCACTTGGCAGGAAACGGT
GGAAGCGTGGCTAGCGTAGAACAGGCGGCCATTGCTCATGATTTGGCCAA
TGGACTGCCTCCTCTGCGCTACAATGCCAACGGACGACTGATTCCAGTGC
CCTTCCACAACACCAAGGGCCGGAATGTGCGGCTCTCGCAGGATCGCTTT
GTGGCTTCTCGTACGGAATCTGACTTCTGCCAGGGATATGTGTTCACTGC
CCGTCCCATTCGCATTGGTGAGAAGCTGATTGTGCAGGTCCTGAAAACGG
AACAGATGTACGTGGGTGCCTTGGCTTTGGGTCTGACCTCCTGCAATCCG
GCCATGTTGCAGCCCAATGATTTGCCCAATGATTCGGATTTCCTGCTCGA
TCGCCCCGAGTACTGGGTGGTGAGCAAGGATATTGCAGCTGCTCCTCAGC
GCGGCGATGAGATTGCCTTCTTCGTGGCGCCCAACGGTGAAGTGAGCATC
AGCAAGAACAACGGACCAGCTGTGGTGGTGATGCATGTGGACCAGTCCCT
CCAGCTGTGGGCCTTCCTGGATGTCTACGGCTCGACGCAGTCTCTGAGGA
TGTTCCGCCAGCAGTTACCCAACATGGTTGCGTATCCATCGCAGCCGCAG
GTCAATGTGAATGCCAGCAGCTCGTCCGCCTGCAACGCTGCCTCCACGTC
CCGCATGCTGCCCATGACCGAGTCGATGAGCAGTCTGAATGCCGGAGCCA
CTGCCAAGCTGTTGCATCATCCCTCGCAGCTGAGCGTAGCCCAGAGTACG
AGCACTTTGGCCTCAGCTGGCGGAGTCAATGGCAGCCGCATGATCAGCAT
GCCCTCCAACGGAGATATTCTCCAGATCCAGCCGAATGGTGGTGGCACCG
TTCTGGTGGTCAACCTGCCACCTGCTAGCAGCTCGCACGATATAAACGGC
CAACTCGCGGCCAGGCCAACGGCCACGGTAACCTCCAGCGGTGTTCTGGC
CGGAGCCTGCTCCAGCGGCACCCTTATCAGCACCACCAGCAGCCAGTACA
TCGAGCAGCCCATTGCCAATAGCACAAATAATGCGGCCAACAAGTGGAAG
GACAGCCTGAGCGACCAGCAGAGCACCGATTCGAGTGCCGAATGCACCAT
CTGCTACGAGAATCCCATCGACTCGGTGCTGTACATGTGCGGACACATGT
GCATGTGCTACGACTGCGCCATCGAGCAGTGGCGCGGAGTGGGTGGTGGC
CAGTGCCCACTGTGCCGGGCGGTGATCCGGGACGTCATCCGCACCTACAC
CACGTAGAAAGGTCGCGGGCGTTTCCTAGCCAAGCAACATTTACTCGCAA
TCAAACCTACTAAAGCTACACATTATACCATACACACAAGTTGTTGCATT
TTAAACGCAATTGAGCGCAAAGAATATTATATTGGAGAGATAGGCATTAT
TTTTGCAGACTAAAGATTAGATAGTTTACGCAGCTAGATTAGTGTATGAA
ACTATCAACTAATTTATCACACGTATGTTTAATTTTTTTGTGATGTTATA
AGTAAGTGCGCCCCAGAGCCAAAACTATGTATTGTTCAATCCAACAAAGA
TATCTTCGTTTTTTCAATTTTTTTCAAACCTTGAATCGCCCATTTGTGCG
TTGTATACTGAAAAACCAAAGTATTGTATAGGAGTTTATAGTATTTTGAA
TTTAAATTGGAATTAATTGAAAGTTGTTGCAAATTTACTTAGTTTTTCTC
TATGTCTAAATTCCAAACGATGTGCAAAATTAACAAACACAAACTACAAG
GATTCTTTATTTGGCGATTAATCATTTTGGTGCTAAATGTTTTGAAAGGC
AAAATAAAATTGTTAACGGATTTGAAAAGTTATGTTTAAGCTTGCAGCAA
CTACGAATGACCTTAATTTGATATGAAATCACAAGAAGCAAATATTGACT
ACTTTCCAGCAAGGAAATGGATATCGACGCAACTCAAATAAGTTTGCAGC
ACAAATTAATGAACAAAGATTGATCAGAAAACACTTATGCACGTAAACCA
AAATAGAAAACTGCAAGAGCGTGTTTGTTTAAAGTTAATATTAGTCTAGC
CCTAAGTACTTAAGTTAATTTCTAGTCAACGAATTATGCTGAAGTTAAAT
TTAAACCGGACTTCATCCAACAAAGACACCACAAAAAAGACGTATTAAGC
ACGCTAAGCTATTTTAATGAAGCCGCATTTTAAATTACACTTAAGTAGTG
CACGTATTTTAATGGAGACTTAAATATATTTAACTATAAACATAGAACAA
AAGACTTGTATGTTGTACCAACAGCTTGAATGAAATATGGAAAATGGAAT
GCCCATCTAAATAAACCATGCAGTTAGAAAAAAAAAAAAAAAAAAA

RE20876.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
neur.a 3610 neur.a 1..3381 1..3381 16890 99.9 Plus
neur-RC 3828 neur-RC 52..3432 1..3381 16890 99.9 Plus
neur-RE 3828 neur-RE 52..3432 1..3381 16890 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4847998..4849741 2055..312 8675 99.8 Minus
chr3R 27901430 chr3R 4846617..4847940 3377..2054 6560 99.7 Minus
chr3R 27901430 chr3R 4865037..4865348 313..1 1515 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9023847 2055..312 8720 100 Minus
3R 32079331 3R 9020719..9022046 3381..2054 6625 99.9 Minus
3R 32079331 3R 9039155..9039467 313..1 1565 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8762935..8764678 2055..312 8720 100 Minus
3R 31820162 3R 8761550..8762877 3381..2054 6625 99.9 Minus
3R 31820162 3R 8779986..8780298 313..1 1565 100 Minus
Blast to na_te.dros performed 2019-03-16 01:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7896..7947 2756..2707 147 78.8 Minus
Tirant 8526 Tirant TIRANT 8526bp 6936..7071 2925..3060 139 60.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 2749..2865 2940..3051 121 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2613 2007..2115 120 59.1 Plus

RE20876.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:29:10 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4846617..4847938 2056..3377 99 <- Minus
chr3R 4847998..4849739 314..2055 99 <- Minus
chr3R 4865037..4865348 1..313 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:47:28 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 1..2019 289..2307 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:27 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 1..2019 289..2307 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:40 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..2019 289..2307 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:42:35 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..2019 289..2307 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:34:11 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..2019 289..2307 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:27 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 1..3377 1..3377 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:27 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 1..3377 1..3377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:40 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 5..3381 1..3377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:42:35 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..3377 1..3377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:34:11 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 5..3381 1..3377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:10 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9020723..9022044 2056..3377 99 <- Minus
3R 9022104..9023845 314..2055 100 <- Minus
3R 9039155..9039467 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:10 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9020723..9022044 2056..3377 99 <- Minus
3R 9022104..9023845 314..2055 100 <- Minus
3R 9039155..9039467 1..313 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:29:10 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9020723..9022044 2056..3377 99 <- Minus
3R 9022104..9023845 314..2055 100 <- Minus
3R 9039155..9039467 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:40 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4846445..4847766 2056..3377 99 <- Minus
arm_3R 4847826..4849567 314..2055 100 <- Minus
arm_3R 4864877..4865189 1..313 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:18 Download gff for RE20876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8761554..8762875 2056..3377 99 <- Minus
3R 8762935..8764676 314..2055 100 <- Minus
3R 8779986..8780298 1..313 100   Minus

RE20876.pep Sequence

Translation from 288 to 2306

> RE20876.pep
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTT*

RE20876.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18432-PA 759 GF18432-PA 93..759 8..672 3265 93 Plus
Dana\GF11573-PA 312 GF11573-PA 53..143 26..113 166 37.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17398-PA 671 GG17398-PA 1..671 1..672 3554 98.4 Plus
Dere\GG23004-PA 320 GG23004-PA 62..152 26..113 166 37.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18220-PA 671 GH18220-PA 1..671 1..672 2813 81.3 Plus
Dgri\GH20356-PA 311 GH20356-PA 52..143 25..113 174 40.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
neur-PE 672 CG11988-PE 1..672 1..672 3528 100 Plus
neur-PC 672 CG11988-PC 1..672 1..672 3528 100 Plus
neur-PD 671 CG11988-PD 1..671 1..672 3511 99.9 Plus
neur-PA 754 CG11988-PA 90..754 8..672 3491 99.8 Plus
neur-PB 753 CG11988-PB 90..753 8..672 3474 99.7 Plus
CG3894-PC 322 CG3894-PC 64..154 26..113 160 37.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10174-PA 727 GI10174-PA 72..727 8..672 2750 80.1 Plus
Dmoj\GI11543-PA 1782 GI11543-PA 13..407 27..433 177 22.5 Plus
Dmoj\GI20025-PA 310 GI20025-PA 51..142 25..113 174 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12492-PA 763 GL12492-PA 89..763 8..672 3029 87.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11314-PA 765 GA11314-PA 91..765 8..672 2987 87.1 Plus
Dpse\GA22479-PA 160 GA22479-PA 40..130 26..113 170 36.3 Plus
Dpse\GA17757-PA 297 GA17757-PA 40..130 26..113 170 36.3 Plus
Dpse\GA22480-PA 296 GA22480-PA 40..130 26..113 170 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26288-PA 671 GM26288-PA 1..671 1..672 3570 99 Plus
Dsec\GM11897-PA 322 GM11897-PA 64..154 26..113 165 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20824-PA 671 GD20824-PA 1..671 1..672 3570 99 Plus
Dsim\GD11895-PA 322 GD11895-PA 64..154 26..113 165 37.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\neur-PA 720 GJ10875-PA 52..720 8..672 2850 83.1 Plus
Dvir\GJ21273-PA 310 GJ21273-PA 51..142 25..113 174 40.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11419-PA 767 GK11419-PA 82..767 8..672 3006 84.7 Plus
Dwil\GK17149-PA 1916 GK17149-PA 16..403 27..433 181 24.3 Plus
Dwil\GK21668-PA 309 GK21668-PA 46..140 26..117 171 38.9 Plus
Dwil\GK17149-PA 1916 GK17149-PA 245..410 25..177 159 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24802-PA 671 GE24802-PA 1..671 1..672 3549 98.2 Plus
Dyak\GE14441-PA 323 GE14441-PA 65..155 26..113 165 37.4 Plus

RE20876.hyp Sequence

Translation from 288 to 2306

> RE20876.hyp
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTT*

RE20876.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
neur-PE 672 CG11988-PE 1..672 1..672 3528 100 Plus
neur-PC 672 CG11988-PC 1..672 1..672 3528 100 Plus
neur-PD 671 CG11988-PD 1..671 1..672 3511 99.9 Plus
neur-PA 754 CG11988-PA 90..754 8..672 3491 99.8 Plus
neur-PB 753 CG11988-PB 90..753 8..672 3474 99.7 Plus