Clone RE20880 Report

Search the DGRC for RE20880

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:208
Well:80
Vector:pFlc-1
Associated Gene/TranscriptCG17683-RD
Protein status:RE20880.pep: gold
Sequenced Size:2415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17683-RD 2009-10-20 Manual selection by Sue Celniker

Clone Sequence Records

RE20880.complete Sequence

2415 bp assembled on 2010-04-13

GenBank Submission: BT124746.1

> RE20880.complete
ACTAAATATTTGAATAAGTTCAGAAAGCGGTTTGGTGAATATATAAAATA
AAAAGTTAAATATTATTTATTACGAAAACCATGTCGAGGTTGAGCAGAGC
GCTGCAGCTTACAGATATAGATGATTTTATTACGCCCTCACAGATATGCA
TTAAGCCCGTGCAAATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATA
AAGATAAAAGGTGACGGCTGCTTTGAGGAATCAGAGGTAAGTATCACGCT
GGAGCCCATTTTTTATTGAATGAAATGGTTTCGTTACAGAGTGGAAATCT
AAAACTTAATAAAGTTGATATTTCTCTGCAAGACTGTCTTGCGTGTTCTG
GTTGCATCACTTCAGCTGAAGAAGTCCTTATCACGCAGCAGAGCCGAGAA
GAGTTGCTTAAGGTCCTTCAAGAGAATTCAAAGAATAAGGCCTCTGAAGA
CTGGGATAACGTGCGTACGATCGTGTTCACCCTTGCCACCCAGCCTATAC
TAAGCTTAGCCTATCGCTATCAGATAGGTGTGGAGGATGCTGCCCGTCAT
CTTAATGGGTATTTTCGCAGTTTGGGTGCCGACTATGTTTTGTCCACTAA
GGTGGCGGACGATATTGCGCTGCTCGAATGTCGTCAAGAATTTGTAGATA
GGTACCGCGAAAATGAGAACTTGACCATGCTTAGCTCCTCTTGTCCGGGG
TGGGTTTGTTACGCGGAGAAAACACACGGAAACTTCTTATTGCCTTACGT
TTCCACGACCCGATCTCCTCAGCAAATAATGGGAGTGCTTGTGAAGCAAA
TCCTTGCCGATAAGATGAATGTTCCTGCGTCACGAATCTACCATGTGACC
GTGATGCCTTGCTACGACAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTT
CAGCAAGGCAAATAACTCACGCGACGTAGACTGTGTAATCACTTCAGTTG
AGGTGGAACAGTTGCTTAGTGAGGCTCAGCAGCCGCTGTCGCAGTACGAT
CTCCTTGATTTAGACTGGCCATGGTCTAATGTACGCCCAGAATTCATGGT
ATGGGCTCACGAGAAGACGCTATCTGGCGGTTACGCAGAACACATATTTA
AGTACGCCGCAAAACATATTTTCAACGAAGATTTAAAAACAGAGTTGGAA
TTCAAACAGCTCAAAAACCGCGACTTTAGAGAAATTATACTTAAACAGAA
TGGCAAAACTGTCCTGAAATTTGCAATTGCTAACGGTTTCCGGAACATAC
AAAACTTGGTACAAAAACTGAAGCGTGAAAAGGTATCAAATTACCACTTT
GTTGAGGTAATGGCCTGTCCCTCGGGCTGTATAAACGGAGGAGCACAAAT
ACGTCCCACTACCGGACAGCACGTTCGCGAGCTTACCCGGAAACTGGAGG
AATTATACCAGAATCTTCCACGGTCCGAACCCGAAAACTCCTTAACAAAA
CATATTTACAATGACTTTTTAGACGGCTTTCAAAGTGATAAATCATATGA
CGTGCTGCACACCCGTTACCATGATGTAGTATCTGAGCTCAGTATATCGC
TTAATATAAATTGGTAAACGTATTGTGCTTGATTATCTCTTTTAGTATAT
CGACAGTTTCGGTAAAGGAATAAGGCCCACAAACAAATATTTAAAATTAA
AAAAAAAAAACTCATTTAAACGGGGTGAGATTAGTGACAATACCGTTTTA
AACCCAAAAACTGTATGAATAACGAATAATATGATAAAATAGATTTTTCA
TTTATTTATAAACTATTTTCGGGAAATCTAAAATTTTCAAATAAAAAAAT
TGTTCAGTCTGGGCTGTTTAATAAAAAATGGAGGTACCAGTAGAGAAGAA
CAATTCTTTTGGAATCATTCTTAAAACCCTCCAGTAATAACGCATCAGTG
ACATTTCGTGAAAGGTTTTTGTATTGGGAACATCGCGCAAAATCAACGGA
AACAAGGGAGAAGGCAAATTCGAGATCCCAAAGAAAATGTCTATGTGCGT
ACTTGTCATCAAATAAGTAAAATAAGGATTAGAGTACGACAATATTATTT
TCCAATCATTCAAAAGGGTACAAGCAAATACTCTAGAATAATGTAGAATG
CATGGCCGTTACGCATACTGTTATTTTAGTGTCTTTGGTACAAGCCTAAA
CATGTGTTTTGTACAAGTTAACTTAAGTTAACGCCGCTACGACGACCGTG
TGGCAACAACGGCATTCTGCAACGTAAGCATTAGACCGGATGTCGTTACG
TAGCCGGCAGACACAGCTTATTTGCATGGCCGCTACGAATATGAAACAGC
AACAATGTGTTTCGCTTTCAGTCGTGTAGCTCTTAAAAATTTAATTTAAT
TCTTGCAGCAGCACTTGCTCTGCTCAATAAAGAGTTCTTAAAAGTTAAAT
AAAAAAAAAAAAAAA

RE20880.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683.f 2467 CG17683.f 26..2421 1..2397 11945 99.9 Plus
CG17683.e 2478 CG17683.e 324..2432 288..2397 10510 99.9 Plus
CG17683.g 2404 CG17683.g 311..2404 288..2382 10435 99.9 Plus
CG17683.e 2478 CG17683.e 90..325 1..236 1180 100 Plus
CG17683.g 2404 CG17683.g 26..168 1..143 715 100 Plus
CG17683.g 2404 CG17683.g 217..312 141..236 480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19538..20989 945..2397 7215 99.9 Plus
chr2R 21145070 chr2R 18677..19483 141..947 4035 100 Plus
chr2R 21145070 chr2R 18486..18628 1..143 715 100 Plus
chrU 10048995 chrU 3071688..3071806 2202..2320 535 96.6 Plus
chr3L 24539361 chr3L 24301925..24302043 2202..2320 505 95 Plus
chr2RHet 3288813 chr2RHet 2144016..2144178 2320..2165 480 87.7 Minus
chr3RHet 2517486 chr3RHet 799349..799467 2202..2320 475 93.3 Plus
chr3LHet 2555433 chr3LHet 1335752..1335870 2320..2202 445 91.6 Minus
chr2R 21145070 chr2R 702764..702929 2318..2160 420 84.9 Minus
chr3LHet 2555433 chr3LHet 411386..411504 2320..2202 400 89.1 Minus
chr3LHet 2555433 chr3LHet 460443..460561 2320..2202 400 89.1 Minus
chr2R 21145070 chr2R 17532..17648 2320..2204 390 88.9 Minus
chrU 10048995 chrU 5914371..5914487 2320..2204 390 88.9 Minus
chrU 10048995 chrU 9331142..9331258 2204..2320 390 88.9 Plus
chrU 10048995 chrU 1600308..1600424 2204..2320 390 88.9 Plus
chrU 10048995 chrU 1607450..1607566 2204..2320 390 88.9 Plus
chrU 10048995 chrU 1809921..1810037 2204..2320 390 88.9 Plus
chrU 10048995 chrU 1816409..1816525 2204..2320 390 88.9 Plus
chr3L 24539361 chr3L 23343660..23343776 2204..2320 390 88.9 Plus
chr3L 24539361 chr3L 23354544..23354660 2204..2320 390 88.9 Plus
chr2RHet 3288813 chr2RHet 834557..834673 2320..2204 390 88.9 Minus
chr2RHet 3288813 chr2RHet 2370324..2370440 2204..2320 390 88.9 Plus
chr2RHet 3288813 chr2RHet 2832070..2832186 2320..2204 390 88.9 Minus
chr2RHet 3288813 chr2RHet 2840074..2840190 2320..2204 390 88.9 Minus
chr3RHet 2517486 chr3RHet 750985..751096 2320..2209 380 89.3 Minus
chrU 10048995 chrU 305552..305668 2204..2320 375 88 Plus
chrU 10048995 chrU 5809534..5809650 2204..2320 375 88 Plus
chr3RHet 2517486 chr3RHet 521945..522061 2204..2320 375 88 Plus
chrX 22417052 chrX 21532938..21533054 2320..2204 360 87.2 Minus
chr2R 21145070 chr2R 648559..648640 2237..2318 335 93.9 Plus
chr2RHet 3288813 chr2RHet 79754..79865 2209..2320 335 86.6 Plus
chr4 1351717 chr4 1170076..1170184 2211..2319 335 87.2 Plus
chr2RHet 3288813 chr2RHet 1302135..1302253 2320..2202 325 84.9 Minus
chr2RHet 3288813 chr2RHet 102307..102412 2215..2320 320 86.8 Plus
chrU 10048995 chrU 284750..284863 2204..2320 310 86.3 Plus
chr2RHet 3288813 chr2RHet 3216970..3217043 2320..2247 265 90.5 Minus
chr2RHet 3288813 chr2RHet 1311195..1311253 2320..2262 220 91.5 Minus
chr3LHet 2555433 chr3LHet 2269343..2269395 2320..2268 220 94.3 Minus
chr3LHet 2555433 chr3LHet 1208198..1208304 2310..2204 205 79.4 Minus
chr2RHet 3288813 chr2RHet 1302025..1302067 2397..2355 200 97.7 Minus
chr3LHet 2555433 chr3LHet 1335669..1335711 2397..2355 200 97.7 Minus
chr3RHet 2517486 chr3RHet 182316..182405 2289..2200 195 81.1 Minus
chr3RHet 2517486 chr3RHet 799527..799569 2355..2397 185 95.3 Plus
chrX 22417052 chrX 21521312..21521354 2397..2355 185 95.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4132034..4133485 945..2397 7215 99.9 Plus
2R 25286936 2R 4131173..4131979 141..947 4035 100 Plus
2R 25286936 2R 4130982..4131124 1..143 715 100 Plus
3R 32079331 3R 643711..643829 2320..2202 535 96.6 Minus
3L 28110227 3L 24313026..24313144 2202..2320 505 95 Plus
2R 25286936 2R 3350364..3350526 2320..2165 480 87.7 Minus
3R 32079331 3R 2096821..2096939 2202..2320 475 93.3 Plus
3L 28110227 3L 25953093..25953211 2320..2202 445 91.6 Minus
2R 25286936 2R 4815194..4815359 2318..2160 420 84.9 Minus
3L 28110227 3L 24977112..24977230 2320..2202 400 89.1 Minus
2R 25286936 2R 60155..60271 2320..2204 390 88.9 Minus
2R 25286936 2R 67296..67412 2320..2204 390 88.9 Minus
2R 25286936 2R 2091421..2091537 2320..2204 390 88.9 Minus
2R 25286936 2R 3572492..3572608 2204..2320 390 88.9 Plus
2R 25286936 2R 4130028..4130144 2320..2204 390 88.9 Minus
3R 32079331 3R 535356..535472 2204..2320 390 88.9 Plus
3R 32079331 3R 541844..541960 2204..2320 390 88.9 Plus
3R 32079331 3R 990687..990803 2320..2204 390 88.9 Minus
3L 28110227 3L 23354744..23354860 2204..2320 390 88.9 Plus
3L 28110227 3L 23365628..23365744 2204..2320 390 88.9 Plus
3L 28110227 3L 27915179..27915295 2204..2320 390 88.9 Plus
3L 28110227 3L 27923183..27923299 2204..2320 390 88.9 Plus
U 3151297 U 2182146..2182262 2204..2320 390 88.9 Plus
Xmm 1049845 Xmm 1032004..1032120 2320..2204 390 88.9 Minus
3L 28110227 3L 24928057..24928175 2320..2202 385 88.2 Minus
3R 32079331 3R 756522..756633 2209..2320 380 89.3 Plus
2R 25286936 2R 728401..728517 2204..2320 375 88 Plus
3R 32079331 3R 983519..983635 2320..2204 375 88 Minus
U 3151297 U 3038965..3039081 2204..2320 375 88 Plus
X 23542271 X 21667780..21667896 2320..2204 360 87.2 Minus
2R 25286936 2R 4760974..4761055 2237..2318 335 93.9 Plus
2R 25286936 2R 953018..953129 2209..2320 335 86.6 Plus
4 1348131 4 1149593..1149701 2211..2319 335 87.2 Plus
2R 25286936 2R 2531396..2531514 2320..2202 325 84.9 Minus
2R 25286936 2R 975566..975671 2215..2320 320 86.8 Plus
2R 25286936 2R 707599..707712 2204..2320 310 86.3 Plus
2R 25286936 2R 4031653..4031726 2320..2247 265 90.5 Minus
2R 25286936 2R 2540456..2540514 2320..2262 220 91.5 Minus
3L 28110227 3L 27162018..27162070 2320..2268 220 94.3 Minus
3L 28110227 3L 25825532..25825638 2310..2204 205 79.4 Minus
2R 25286936 2R 2531286..2531328 2397..2355 200 97.7 Minus
3L 28110227 3L 25953010..25953052 2397..2355 200 97.7 Minus
3R 32079331 3R 1251979..1252068 2200..2289 195 81.1 Plus
3R 32079331 3R 2096999..2097041 2355..2397 185 95.3 Plus
X 23542271 X 21656154..21656196 2397..2355 185 95.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 4133233..4134684 945..2397 7225 99.9 Plus
2R 25260384 2R 4132372..4133178 141..947 4035 100 Plus
2R 25260384 2R 4132181..4132323 1..143 715 100 Plus
3R 31820162 3R 441289..441407 2320..2202 535 96.6 Minus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 14923..15041 2202..2320 535 96.6 Plus
3L 28103327 3L 24306126..24306244 2202..2320 505 94.9 Plus
3R 31820162 3R 1894399..1894517 2202..2320 475 93.2 Plus
2R 25260384 2R 3350364..3350482 2320..2202 460 92.4 Minus
3L 28103327 3L 25946193..25946311 2320..2202 445 91.5 Minus
3L 28103327 3L 24970212..24970330 2320..2202 400 89 Minus
2R 25260384 2R 3573691..3573807 2204..2320 390 88.8 Plus
2R 25260384 2R 4816393..4816509 2318..2202 390 88.8 Minus
2R 25260384 2R 4131227..4131343 2320..2204 390 88.8 Minus
2R 25260384 2R 2091421..2091537 2320..2204 390 88.8 Minus
2R 25260384 2R 67296..67412 2320..2204 390 88.8 Minus
2R 25260384 2R 60155..60271 2320..2204 390 88.8 Minus
3L 28103327 3L 27916283..27916399 2204..2320 390 88.8 Plus
3L 28103327 3L 27908279..27908395 2204..2320 390 88.8 Plus
3L 28103327 3L 23358728..23358844 2204..2320 390 88.8 Plus
3L 28103327 3L 23347844..23347960 2204..2320 390 88.8 Plus
3R 31820162 3R 339422..339538 2204..2320 390 88.8 Plus
3R 31820162 3R 332934..333050 2204..2320 390 88.8 Plus
3R 31820162 3R 788265..788381 2320..2204 390 88.8 Minus
3L 28103327 3L 24921157..24921275 2320..2202 385 88.2 Minus
3R 31820162 3R 554100..554211 2209..2320 380 89.2 Plus
2R 25260384 2R 728401..728517 2204..2320 375 88 Plus
3R 31820162 3R 781097..781213 2320..2204 375 88 Minus
X 23527363 X 21652872..21652988 2320..2204 360 87.1 Minus
2R 25260384 2R 4762173..4762254 2237..2318 335 93.9 Plus
2R 25260384 2R 953018..953129 2209..2320 335 86.6 Plus
4 1331231 4 1149593..1149701 2211..2319 335 87.1 Plus
2R 25260384 2R 2531396..2531514 2320..2202 325 84.8 Minus
2R 25260384 2R 975566..975671 2215..2320 320 86.7 Plus
2R 25260384 2R 707599..707712 2204..2320 320 86.3 Plus
2R 25260384 2R 4032852..4032925 2320..2247 265 90.5 Minus
2R 25260384 2R 2540456..2540514 2320..2262 220 91.5 Minus
3L 28103327 3L 27155118..27155170 2320..2268 220 94.3 Minus
3L 28103327 3L 25818632..25818738 2310..2204 205 79.4 Minus
2R 25260384 2R 2531286..2531328 2397..2355 200 97.6 Minus
3L 28103327 3L 25946110..25946152 2397..2355 200 97.6 Minus
3R 31820162 3R 1049557..1049646 2200..2289 195 81.1 Plus
3R 31820162 3R 1894577..1894619 2355..2397 185 95.3 Plus
2R 25260384 2R 2540515..2540558 2245..2202 175 93.1 Minus
3R 31820162 3R 441187..441229 2397..2355 170 93 Minus
Unmapped_scaffold_39 40272 Unmapped_scaffold_39 15101..15143 2355..2397 170 93 Plus
2R 25260384 2R 4752654..4752701 2097..2144 165 89.5 Plus
2R 25260384 2R 2540358..2540396 2393..2355 165 94.8 Minus
3L 28103327 3L 24927029..24927072 2320..2277 160 90.9 Minus
2R 25260384 2R 4762316..4762359 2355..2397 150 93.1 Plus
2R 25260384 2R 4816523..4816558 2195..2160 150 94.4 Minus
2R 25260384 2R 4816288..4816331 2397..2355 150 93.1 Minus
3L 28103327 3L 23650338..23650376 2355..2393 150 92.3 Plus
3L 28103327 3L 24927089..24927121 2234..2202 150 96.9 Minus
3L 28103327 3L 24988921..24988953 2234..2202 150 96.9 Minus
X 23527363 X 22420797..22420844 2144..2097 150 87.5 Minus
3L 28103327 3L 23644536..23644585 2097..2146 145 86 Plus
3L 28103327 3L 24970505..24970545 2137..2097 145 90.2 Minus
3L 28103327 3L 24921450..24921490 2137..2097 145 90.2 Minus
3L 28103327 3L 24988861..24988904 2320..2277 145 88.6 Minus
3R 31820162 3R 332434..332474 2097..2137 145 90.2 Plus
X 23527363 X 22415017..22415053 2288..2252 140 91.8 Minus
Blast to na_te.dros performed 2019-03-16 11:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1..184 2166..2346 528 78.7 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 6489..6672 2166..2346 528 78.7 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 1..125 2166..2288 177 66.4 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 7138..7262 2166..2288 177 66.4 Plus
1360 3409 1360 1360 3409bp 3369..3409 2097..2137 169 90.2 Plus
1360 3409 1360 1360 3409bp 1..37 2137..2100 133 86.8 Minus
invader3 5484 invader3 INVADER3 5484bp 1846..1893 23..70 132 75 Plus

RE20880.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:53:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18486..18628 1..143 100 -> Plus
chr2R 18680..19483 144..947 100 -> Plus
chr2R 19541..20991 948..2400 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-19 15:45:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 1..1293 275..1567 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:55:14 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RB 1..1293 275..1567 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:36:03 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 1..1293 275..1567 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:55 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 1..1293 275..1567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:45:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 1..1874 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:55:14 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 1..1874 1..1875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:36:03 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 9..2403 1..2396 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:55 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 9..2403 1..2396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4130982..4131124 1..143 100 -> Plus
2R 4131176..4131979 144..947 100 -> Plus
2R 4132037..4133487 948..2400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4130982..4131124 1..143 100 -> Plus
2R 4131176..4131979 144..947 100 -> Plus
2R 4132037..4133487 948..2400 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:23 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4130982..4131124 1..143 100 -> Plus
2R 4131176..4131979 144..947 100 -> Plus
2R 4132037..4133487 948..2400 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:36:03 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18487..18629 1..143 100 -> Plus
arm_2R 18681..19484 144..947 100 -> Plus
arm_2R 19542..20992 948..2400 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:46:44 Download gff for RE20880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4132375..4133178 144..947 100 -> Plus
2R 4133236..4134686 948..2400 99   Plus
2R 4132181..4132323 1..143 100 -> Plus

RE20880.pep Sequence

Translation from 274 to 1566

> RE20880.pep
MVSLQSGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQE
NSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSL
GADYVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKT
HGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKK
LEASREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPW
SNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRD
FREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPS
GCINGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLD
GFQSDKSYDVLHTRYHDVVSELSISLNINW*

RE20880.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22738-PA 476 GF22738-PA 53..476 6..430 1653 69.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21400-PA 477 GG21400-PA 52..477 5..430 2032 86.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10760-PA 476 GH10760-PA 52..476 5..430 1686 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PD 430 CG17683-PD 1..430 1..430 2243 100 Plus
CG17683-PC 473 CG17683-PC 48..473 5..430 2223 99.8 Plus
CG17683-PA 477 CG17683-PA 52..477 5..430 2223 99.8 Plus
CG17683-PE 296 CG17683-PE 1..296 135..430 1567 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11683-PA 476 GI11683-PA 52..476 5..430 1752 73.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21135-PA 477 GL21135-PA 53..477 5..430 1789 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29080-PA 477 GA29080-PA 53..477 5..430 1789 75.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20417-PA 478 GM20417-PA 49..478 1..430 2252 95.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17698-PA 288 GD17698-PA 52..268 5..221 1137 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13047-PA 476 GJ13047-PA 52..476 5..430 1741 72.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14772-PA 477 GK14772-PA 51..477 3..430 1782 75 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22682-PA 477 GE22682-PA 52..477 5..430 2064 88 Plus

RE20880.hyp Sequence

Translation from 274 to 1566

> RE20880.hyp
MVSLQSGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQE
NSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSL
GADYVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKT
HGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKK
LEASREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPW
SNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRD
FREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPS
GCINGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLD
GFQSDKSYDVLHTRYHDVVSELSISLNINW*

RE20880.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PD 430 CG17683-PD 1..430 1..430 2243 100 Plus
CG17683-PC 473 CG17683-PC 48..473 5..430 2223 99.8 Plus
CG17683-PA 477 CG17683-PA 52..477 5..430 2223 99.8 Plus
CG17683-PE 296 CG17683-PE 1..296 135..430 1567 100 Plus