Clone RE20991 Report

Search the DGRC for RE20991

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:209
Well:91
Vector:pFlc-1
Associated Gene/TranscriptCG14879-RB
Protein status:RE20991.pep: gold
Preliminary Size:540
Sequenced Size:1762

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14879 2002-01-01 Sim4 clustering to Release 2
CG14879 2002-01-03 Blastp of sequenced clone
CG14879 2003-01-01 Sim4 clustering to Release 3
CG14879 2008-04-29 Release 5.5 accounting
CG14879 2008-08-15 Release 5.9 accounting
CG14879 2008-12-18 5.12 accounting

Clone Sequence Records

RE20991.complete Sequence

1762 bp (1762 high quality bases) assembled on 2002-01-03

GenBank Submission: AY084129

> RE20991.complete
AGTTTTCAATCACGCGCGAATGCGAACGGAACTGCGCGTCGTGGAATTAT
TTAAATTAGTTAAAGCTAAGCAAATATGCTCGACTGCACGTTGCCCGTGA
CGTAGTCTTGGACTTAATCCTCTTCCAGTCCCTTAATATAGCACCGTATC
TGTGTAATCGCCAACAGTATTGACCAAGTCGTCCAAGTGCTCACTACTCC
CTCGGCTATTTGGAGTTATTGTAACCGTTGGCAACTGCCACAGCAAACGT
ATTTACAATTATCCGGATAAAATTTGCAATTACACACCTTGCTAAAAATA
AAACGGAAAAGAAGCAGCCCATTATAATAAATCGTTTAAAATGCCTGATG
TGAAGTTCTTTGCCGTGCTGCCCACCAATGCCAGTACCTCGGATCGAGTA
ACCCGGCTGTCCATCAGCGGCAACCTGCTCCAGGATCCCCAGCAATTCTC
GGTGAACTTTGTCAACAGTCCGGACTGCACGGACAACATCACATACCACT
TCAAGGTGGTGATTCCCACACAGACGATTATCGAGAATTATAAGCGGAAC
GGCGAGTGGAGCAGCCTGCACCAGGAGAAGTACCTGAACATCTTCGACGA
GTCCTCCTTTTGCCTTGAGTTCGCCTTCGACTACGCAAATTCAATGATGC
GGGTGTACCAGGGTAGGGATTCGGGCCACAATTTCATAACCGAGTACGAG
ACTCTCTTCTCCCTGTCCGACATCCAGGCTGTACAGGTGTGGGGCGATGT
ACAGAAGGTCAACCAGTTTGCCCTAAGCTACAACTGATCGGGAGAAGAAT
CCCAAAGATCCCATGATCCCCAAGGTAGCCCGCAATGTTCTCTTATTTAA
TGCATTCTTTCTTCAATCGCATAGATTCAAGTTCGGTGGCGGGCGTCCTT
AGTCCTAACACCGCACGACCTTAATCCCCTCACCTGTAGTTTTAATTAGT
TTGTTGGATTCCGCACCCATCTAAATCACTTCGCTGCAGTAGCAACACGC
TTTCACTCCTTCGCTTGTTAATGCGTTGAGTATCATTATAATTTGACTAC
AAGTTCTTGTTGATCGTGGGCTTAAGAAACATTTTCCCATCAAGATGATT
GTGGTTTTTTAACAGTATTAAACCAATATTTATTTATTTGCAAAAATCTC
AAAAATTTAATTGAAACACCTGTTTTCTTTACGTTCTATGTTAAATTGTT
TAAAATTTTAAAAGTACTCAAAATTTTAATTGGCATTTGAATAGGTTTTA
TGCCCCATTTCTTGCAACATAAGGCAATATCATTTTCAATAGTATTGCTG
GATTGCAGCGTTTTCCACTTATATCTTTATGATGCCGTAAGAGTTTGATA
ATATTCCATTGTTTGATAAACCAAATCAGCATTAACAAACACACATTCAC
GGACTACATACATACATATATATGTCAGTCACATATCACTCACCTCGGTG
CTATCTGTCTTATGACGTCACTTTAGCTCTGCTATGTCCTATTGCTATCC
TTTGCAGTTGCTAATTGTTTCTTTGTTTGTAGTTGATAGCAAACGTATTT
GTAAGGCCAAAGAATTTTATGTATAATACACCTTGAGTTTCTGTTTCGCG
CTTGCTAAAGTCTTCCATTCAGATTGTAAACCTACAATGTAAGTGTTAGC
TTTACCTGTAATACCTACATACATATGTATACAGACCACGCCAAGTATTA
AAAATCGCATGACAAGTGCGTTTTCCACAAATTAAATGCGTAAACACAAA
AAAAAAAAAAAA

RE20991.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-RB 1902 CG14879-RB 71..1820 1..1750 8750 100 Plus
CG14879-RA 1995 CG14879-RA 762..1913 599..1750 5760 100 Plus
CG14879-RA 1995 CG14879-RA 71..669 1..599 2995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12170828..12171976 1747..599 5730 99.9 Minus
chr3R 27901430 chr3R 12173476..12173920 444..1 2160 99.6 Minus
chr3R 27901430 chr3R 12172069..12172223 599..445 775 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16346130..16347281 1750..599 5760 100 Minus
3R 32079331 3R 16348781..16349224 444..1 2220 100 Minus
3R 32079331 3R 16347374..16347528 599..445 775 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16086961..16088112 1750..599 5760 100 Minus
3R 31820162 3R 16089612..16090055 444..1 2220 100 Minus
3R 31820162 3R 16088205..16088359 599..445 775 100 Minus
Blast to na_te.dros performed 2019-03-15 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6835..6999 1030..1195 133 57.4 Plus
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 1574..1626 1508..1557 114 74.1 Plus

RE20991.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:40 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12170828..12171975 600..1747 99 <- Minus
chr3R 12172069..12172223 445..599 100 <- Minus
chr3R 12173476..12173920 1..444 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:22 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 341..787 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:44 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 341..787 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:22 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 341..787 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:36 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 341..787 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:43 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..447 341..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:39 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:44 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:22 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 3..1749 1..1747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:36 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 1..1747 1..1747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:43 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
CG14879-RB 3..1749 1..1747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:40 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16346133..16347280 600..1747 100 <- Minus
3R 16347374..16347528 445..599 100 <- Minus
3R 16348781..16349224 1..444 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:40 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16346133..16347280 600..1747 100 <- Minus
3R 16347374..16347528 445..599 100 <- Minus
3R 16348781..16349224 1..444 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:40 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16346133..16347280 600..1747 100 <- Minus
3R 16347374..16347528 445..599 100 <- Minus
3R 16348781..16349224 1..444 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:22 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12171855..12173002 600..1747 100 <- Minus
arm_3R 12173096..12173250 445..599 100 <- Minus
arm_3R 12174503..12174946 1..444 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:55:12 Download gff for RE20991.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16089612..16090055 1..444 100   Minus
3R 16086964..16088111 600..1747 100 <- Minus
3R 16088205..16088359 445..599 100 <- Minus

RE20991.pep Sequence

Translation from 340 to 786

> RE20991.pep
MPDVKFFAVLPTNASTSDRVTRLSISGNLLQDPQQFSVNFVNSPDCTDNI
TYHFKVVIPTQTIIENYKRNGEWSSLHQEKYLNIFDESSFCLEFAFDYAN
SMMRVYQGRDSGHNFITEYETLFSLSDIQAVQVWGDVQKVNQFALSYN*

RE20991.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16524-PA 148 GF16524-PA 1..148 1..148 657 80.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20048-PA 148 GG20048-PA 1..148 1..148 752 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18076-PA 146 GH18076-PA 1..146 1..148 558 68.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-PB 148 CG14879-PB 1..148 1..148 781 100 Plus
CG14879-PD 179 CG14879-PD 1..179 1..148 739 82.7 Plus
CG14879-PC 179 CG14879-PC 1..179 1..148 739 82.7 Plus
CG14879-PA 179 CG14879-PA 1..179 1..148 739 82.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24649-PA 148 GI24649-PA 1..148 1..148 582 69.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22248-PA 146 GL22248-PA 1..146 1..148 627 80.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13315-PA 146 GA13315-PA 1..146 1..148 627 80.4 Plus
Dpse\GA13315-PB 175 GA13315-PB 1..175 1..148 591 67.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15443-PA 148 GM15443-PA 1..148 1..148 791 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20298-PA 148 GD20298-PA 1..148 1..148 791 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23503-PA 148 GJ23503-PA 1..148 1..148 586 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13510-PA 148 GK13510-PA 1..148 1..148 544 65.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26322-PA 148 GE26322-PA 1..148 1..148 781 98 Plus

RE20991.hyp Sequence

Translation from 340 to 786

> RE20991.hyp
MPDVKFFAVLPTNASTSDRVTRLSISGNLLQDPQQFSVNFVNSPDCTDNI
TYHFKVVIPTQTIIENYKRNGEWSSLHQEKYLNIFDESSFCLEFAFDYAN
SMMRVYQGRDSGHNFITEYETLFSLSDIQAVQVWGDVQKVNQFALSYN*

RE20991.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14879-PB 148 CG14879-PB 1..148 1..148 781 100 Plus
CG14879-PD 179 CG14879-PD 1..179 1..148 739 82.7 Plus
CG14879-PC 179 CG14879-PC 1..179 1..148 739 82.7 Plus
CG14879-PA 179 CG14879-PA 1..179 1..148 739 82.7 Plus