BDGP Sequence Production Resources |
Search the DGRC for RE21057
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 210 |
Well: | 57 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12116-RA |
Protein status: | RE21057.pep: gold |
Preliminary Size: | 1228 |
Sequenced Size: | 1581 |
Gene | Date | Evidence |
---|---|---|
CG12116 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12116 | 2002-02-22 | Blastp of sequenced clone |
CG12116 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12116 | 2008-04-29 | Release 5.5 accounting |
CG12116 | 2008-08-15 | Release 5.9 accounting |
CG12116 | 2008-12-18 | 5.12 accounting |
1581 bp (1581 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084130
> RE21057.complete AGGGCGCTTCTCCATACGGAATCGGAACCTGAGTTGCTCAGTCGAGCATA AATATATATACAATACATATATATGCACATATAGTTGGCCAATCGAAATC GGAATAAAGCTTATCAGTCGAAAACAGAGTCCAGTTGGCAAAGCCCGGAG GAAATAAGGCATCAGTACAGTCGTACAGCTTCAAGTGAAAACAAGTGGAA GATTCTTCAGTTCCCGAAATCCTCAAGTACCCGAAATCCTTTAAATCAAA ATAATGGCAGCAAAGAGAATGGATTTAAATAGACGCACCTTTTTGGTGTT GAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCGCTGGAGTTCTGCC GTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGATGAGGATCAGGAG CAGCTTCGGGAGCTGGAGAATCATCTCCGGAGCGAACTGAAGACGGAGAA CGTTAAGGTGACAATCGGAAAGTTGGACAAAGATCACTCGAATGGTGTGC AGCTAATGGAACAGGCATTGATGGATAATTTCATGGCGGATAAGGACAAT CAACGCTTCGAGCGTTCCATAATCCTTCACAACGAGGGAAAGGCGGCCAC GCATATGCTCCTGGAACCCCAGAGCGACGACGATTGGAAGGCCTATGTCC AGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGACGTGGCTGCAATCG AAGCACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATGTGACCTCATCGCT GATGGTACGTCCATTGGTCCATGCTGGTCTGCTTTGCTCGTGCAAACGGG CCAGGGATATGTACTTCCGCGCCATGGCCGCCGAGGAGTATCGTTTCGGT GTCCATGTGCTCAGCTTCTCGCCCGGTCTGATGGACACCCACGAGGGACA GTGCGATGTGAACGGCAATCGGATCACTCCCGCTGATCTGATAGCCACGA AGCAGTTGCTCCAGCTGCCGAGAATCAAGCCCTGCCAGGCCACACTCAAG CTGATCAACATTCTGGAGGAGATATCCTTTGTCTCCGGTCACGATGTCGA CTATTACGACACCTTCGTTTTATGAGTAGCACCGTGGCGGTGGGCTGCGT CCCCGATGGACTCGGTTCTAATCTTGGTTGACGATTTAAATGCTGTACAT GACTTGATCGCCTTGGAAATTAATAAAATCTGGCCAATGTCCCAGATTTC AGACCTGCAAGTGCACGAAAATCAAGCACACGAACAGGAAAACGAACGAA AAATTATATTTTTATTTTGGGTGGGTGGGTAGAATTTTAGATTTCTATAG GTTTGCCATTCACAATATTAACATATATTGTTGATTTGCTACTTTCAACT GAATTTGAAATTGAGTCTATTTTTAATTAGAATAGACAGGAATCACCGAA GCACACTCCTTATATTTTACCTATAATATATTTAAAACTGATGTTCAAAA AAAGAGTACTGCAGAATATACTTAGTAATTAGTTACTATTGGTAAATTTG TATGTGCAGGCGTGAGTTTATGAGTCAGCAATGCACAACAGATTAAACAA ATATACAGAATATACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12116-RA | 1565 | CG12116-RA | 4..1565 | 4..1565 | 7810 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 8359219..8360780 | 1565..4 | 7480 | 98.6 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 8467442..8469004 | 1566..4 | 7815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 8475540..8477102 | 1566..4 | 7815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 1412..1566 | 1239..1395 | 131 | 57.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 8359219..8360783 | 1..1565 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..822 | 254..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..822 | 254..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..822 | 254..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..822 | 254..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..822 | 254..1075 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..1565 | 1..1565 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..1565 | 1..1565 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 6..1570 | 1..1565 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 1..1565 | 1..1565 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12116-RA | 6..1570 | 1..1565 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8467443..8469007 | 1..1565 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8467443..8469007 | 1..1565 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8467443..8469007 | 1..1565 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 8361476..8363040 | 1..1565 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 8475541..8477105 | 1..1565 | 99 | Minus |
Translation from 253 to 1074
> RE21057.pep MAAKRMDLNRRTFLVLSGSSNPLGQSLALEFCRRLATGSLALILDEDQEQ LRELENHLRSELKTENVKVTIGKLDKDHSNGVQLMEQALMDNFMADKDNQ RFERSIILHNEGKAATHMLLEPQSDDDWKAYVQQQLYAPVALNQTWLQSK HLERVEKLAVNVTSSLMVRPLVHAGLLCSCKRARDMYFRAMAAEEYRFGV HVLSFSPGLMDTHEGQCDVNGNRITPADLIATKQLLQLPRIKPCQATLKL INILEEISFVSGHDVDYYDTFVL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22580-PA | 268 | GF22580-PA | 1..268 | 1..273 | 1051 | 72.2 | Plus |
Dana\GF22581-PA | 261 | GF22581-PA | 1..258 | 6..269 | 245 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19045-PA | 273 | GG19045-PA | 1..273 | 1..273 | 1342 | 91.2 | Plus |
Dere\GG19046-PA | 261 | GG19046-PA | 1..258 | 6..269 | 276 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12504-PA | 268 | GH12504-PA | 1..268 | 1..273 | 831 | 61.9 | Plus |
Dgri\GH23915-PA | 261 | GH23915-PA | 1..261 | 6..269 | 244 | 27 | Plus |
Dgri\GH12505-PA | 261 | GH12505-PA | 1..261 | 6..269 | 244 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12116-PA | 273 | CG12116-PA | 1..273 | 1..273 | 1400 | 100 | Plus |
Sptr-PA | 261 | CG12117-PA | 1..258 | 6..269 | 252 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14857-PA | 264 | GI14857-PA | 1..264 | 1..273 | 873 | 61.5 | Plus |
Dmoj\GI14858-PA | 261 | GI14858-PA | 1..261 | 6..269 | 260 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20245-PA | 269 | GL20245-PA | 1..269 | 1..273 | 1016 | 70.3 | Plus |
Dper\GL20246-PA | 267 | GL20246-PA | 1..263 | 6..269 | 244 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11410-PA | 269 | GA11410-PA | 1..269 | 1..273 | 1019 | 70.3 | Plus |
Dpse\GA11411-PA | 267 | GA11411-PA | 1..263 | 6..269 | 245 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21301-PA | 273 | GM21301-PA | 1..273 | 1..273 | 1425 | 96.3 | Plus |
Dsec\GM21323-PA | 261 | GM21323-PA | 1..258 | 6..269 | 271 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16109-PA | 273 | GD16109-PA | 1..273 | 1..273 | 1434 | 97.1 | Plus |
Dsim\GD16111-PA | 261 | GD16111-PA | 1..258 | 6..269 | 261 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19518-PA | 270 | GJ19518-PA | 1..270 | 1..273 | 916 | 62.9 | Plus |
Translation from 253 to 1074
> RE21057.hyp MAAKRMDLNRRTFLVLSGSSNPLGQSLALEFCRRLATGSLALILDEDQEQ LRELENHLRSELKTENVKVTIGKLDKDHSNGVQLMEQALMDNFMADKDNQ RFERSIILHNEGKAATHMLLEPQSDDDWKAYVQQQLYAPVALNQTWLQSK HLERVEKLAVNVTSSLMVRPLVHAGLLCSCKRARDMYFRAMAAEEYRFGV HVLSFSPGLMDTHEGQCDVNGNRITPADLIATKQLLQLPRIKPCQATLKL INILEEISFVSGHDVDYYDTFVL*