Clone RE21057 Report

Search the DGRC for RE21057

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:210
Well:57
Vector:pFlc-1
Associated Gene/TranscriptCG12116-RA
Protein status:RE21057.pep: gold
Preliminary Size:1228
Sequenced Size:1581

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12116 2002-01-01 Sim4 clustering to Release 2
CG12116 2002-02-22 Blastp of sequenced clone
CG12116 2003-01-01 Sim4 clustering to Release 3
CG12116 2008-04-29 Release 5.5 accounting
CG12116 2008-08-15 Release 5.9 accounting
CG12116 2008-12-18 5.12 accounting

Clone Sequence Records

RE21057.complete Sequence

1581 bp (1581 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084130

> RE21057.complete
AGGGCGCTTCTCCATACGGAATCGGAACCTGAGTTGCTCAGTCGAGCATA
AATATATATACAATACATATATATGCACATATAGTTGGCCAATCGAAATC
GGAATAAAGCTTATCAGTCGAAAACAGAGTCCAGTTGGCAAAGCCCGGAG
GAAATAAGGCATCAGTACAGTCGTACAGCTTCAAGTGAAAACAAGTGGAA
GATTCTTCAGTTCCCGAAATCCTCAAGTACCCGAAATCCTTTAAATCAAA
ATAATGGCAGCAAAGAGAATGGATTTAAATAGACGCACCTTTTTGGTGTT
GAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCGCTGGAGTTCTGCC
GTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGATGAGGATCAGGAG
CAGCTTCGGGAGCTGGAGAATCATCTCCGGAGCGAACTGAAGACGGAGAA
CGTTAAGGTGACAATCGGAAAGTTGGACAAAGATCACTCGAATGGTGTGC
AGCTAATGGAACAGGCATTGATGGATAATTTCATGGCGGATAAGGACAAT
CAACGCTTCGAGCGTTCCATAATCCTTCACAACGAGGGAAAGGCGGCCAC
GCATATGCTCCTGGAACCCCAGAGCGACGACGATTGGAAGGCCTATGTCC
AGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGACGTGGCTGCAATCG
AAGCACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATGTGACCTCATCGCT
GATGGTACGTCCATTGGTCCATGCTGGTCTGCTTTGCTCGTGCAAACGGG
CCAGGGATATGTACTTCCGCGCCATGGCCGCCGAGGAGTATCGTTTCGGT
GTCCATGTGCTCAGCTTCTCGCCCGGTCTGATGGACACCCACGAGGGACA
GTGCGATGTGAACGGCAATCGGATCACTCCCGCTGATCTGATAGCCACGA
AGCAGTTGCTCCAGCTGCCGAGAATCAAGCCCTGCCAGGCCACACTCAAG
CTGATCAACATTCTGGAGGAGATATCCTTTGTCTCCGGTCACGATGTCGA
CTATTACGACACCTTCGTTTTATGAGTAGCACCGTGGCGGTGGGCTGCGT
CCCCGATGGACTCGGTTCTAATCTTGGTTGACGATTTAAATGCTGTACAT
GACTTGATCGCCTTGGAAATTAATAAAATCTGGCCAATGTCCCAGATTTC
AGACCTGCAAGTGCACGAAAATCAAGCACACGAACAGGAAAACGAACGAA
AAATTATATTTTTATTTTGGGTGGGTGGGTAGAATTTTAGATTTCTATAG
GTTTGCCATTCACAATATTAACATATATTGTTGATTTGCTACTTTCAACT
GAATTTGAAATTGAGTCTATTTTTAATTAGAATAGACAGGAATCACCGAA
GCACACTCCTTATATTTTACCTATAATATATTTAAAACTGATGTTCAAAA
AAAGAGTACTGCAGAATATACTTAGTAATTAGTTACTATTGGTAAATTTG
TATGTGCAGGCGTGAGTTTATGAGTCAGCAATGCACAACAGATTAAACAA
ATATACAGAATATACAAAAAAAAAAAAAAAA

RE21057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12116-RA 1565 CG12116-RA 4..1565 4..1565 7810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8359219..8360780 1565..4 7480 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8467442..8469004 1566..4 7815 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8475540..8477102 1566..4 7815 100 Minus
Blast to na_te.dros performed 2019-03-16 07:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1412..1566 1239..1395 131 57.2 Plus

RE21057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:29:25 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8359219..8360783 1..1565 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:25 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..822 254..1075 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:09 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..822 254..1075 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:23:28 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..822 254..1075 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:15 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..822 254..1075 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:33:31 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..822 254..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:12 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..1565 1..1565 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:09 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..1565 1..1565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:28 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 6..1570 1..1565 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:15 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 1..1565 1..1565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:33:31 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
CG12116-RA 6..1570 1..1565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:25 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
X 8467443..8469007 1..1565 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:25 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
X 8467443..8469007 1..1565 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:29:25 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
X 8467443..8469007 1..1565 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:28 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8361476..8363040 1..1565 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:26 Download gff for RE21057.complete
Subject Subject Range Query Range Percent Splice Strand
X 8475541..8477105 1..1565 99   Minus

RE21057.pep Sequence

Translation from 253 to 1074

> RE21057.pep
MAAKRMDLNRRTFLVLSGSSNPLGQSLALEFCRRLATGSLALILDEDQEQ
LRELENHLRSELKTENVKVTIGKLDKDHSNGVQLMEQALMDNFMADKDNQ
RFERSIILHNEGKAATHMLLEPQSDDDWKAYVQQQLYAPVALNQTWLQSK
HLERVEKLAVNVTSSLMVRPLVHAGLLCSCKRARDMYFRAMAAEEYRFGV
HVLSFSPGLMDTHEGQCDVNGNRITPADLIATKQLLQLPRIKPCQATLKL
INILEEISFVSGHDVDYYDTFVL*

RE21057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22580-PA 268 GF22580-PA 1..268 1..273 1051 72.2 Plus
Dana\GF22581-PA 261 GF22581-PA 1..258 6..269 245 27.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19045-PA 273 GG19045-PA 1..273 1..273 1342 91.2 Plus
Dere\GG19046-PA 261 GG19046-PA 1..258 6..269 276 28.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12504-PA 268 GH12504-PA 1..268 1..273 831 61.9 Plus
Dgri\GH23915-PA 261 GH23915-PA 1..261 6..269 244 27 Plus
Dgri\GH12505-PA 261 GH12505-PA 1..261 6..269 244 27 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12116-PA 273 CG12116-PA 1..273 1..273 1400 100 Plus
Sptr-PA 261 CG12117-PA 1..258 6..269 252 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14857-PA 264 GI14857-PA 1..264 1..273 873 61.5 Plus
Dmoj\GI14858-PA 261 GI14858-PA 1..261 6..269 260 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20245-PA 269 GL20245-PA 1..269 1..273 1016 70.3 Plus
Dper\GL20246-PA 267 GL20246-PA 1..263 6..269 244 27.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11410-PA 269 GA11410-PA 1..269 1..273 1019 70.3 Plus
Dpse\GA11411-PA 267 GA11411-PA 1..263 6..269 245 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21301-PA 273 GM21301-PA 1..273 1..273 1425 96.3 Plus
Dsec\GM21323-PA 261 GM21323-PA 1..258 6..269 271 29.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16109-PA 273 GD16109-PA 1..273 1..273 1434 97.1 Plus
Dsim\GD16111-PA 261 GD16111-PA 1..258 6..269 261 28.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19518-PA 270 GJ19518-PA 1..270 1..273 916 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19889-PA 280 GK19889-PA 1..280 1..273 919 62.8 Plus
Dwil\GK19890-PA 265 GK19890-PA 1..264 6..269 220 29 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17449-PA 273 GE17449-PA 1..273 1..273 1305 89 Plus
Dyak\GE17450-PA 262 GE17450-PA 1..259 6..269 263 28.4 Plus

RE21057.hyp Sequence

Translation from 253 to 1074

> RE21057.hyp
MAAKRMDLNRRTFLVLSGSSNPLGQSLALEFCRRLATGSLALILDEDQEQ
LRELENHLRSELKTENVKVTIGKLDKDHSNGVQLMEQALMDNFMADKDNQ
RFERSIILHNEGKAATHMLLEPQSDDDWKAYVQQQLYAPVALNQTWLQSK
HLERVEKLAVNVTSSLMVRPLVHAGLLCSCKRARDMYFRAMAAEEYRFGV
HVLSFSPGLMDTHEGQCDVNGNRITPADLIATKQLLQLPRIKPCQATLKL
INILEEISFVSGHDVDYYDTFVL*

RE21057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12116-PA 273 CG12116-PA 1..273 1..273 1400 100 Plus
Sptr-PA 261 CG12117-PA 1..258 6..269 252 28 Plus