BDGP Sequence Production Resources |
Search the DGRC for RE21160
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 211 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG8207-RA |
Protein status: | RE21160.pep: gold |
Preliminary Size: | 1347 |
Sequenced Size: | 1562 |
Gene | Date | Evidence |
---|---|---|
CG8207 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8207 | 2002-02-22 | Blastp of sequenced clone |
CG8207 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8207 | 2008-04-29 | Release 5.5 accounting |
CG8207 | 2008-08-15 | Release 5.9 accounting |
CG8207 | 2008-12-18 | 5.12 accounting |
1562 bp (1562 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084132
> RE21160.complete TGGTAGAGCGGAGTATTTTCTAGCTGGCAACGTAAACATAAAATATATCT TTCTGAGAACCTGGCCACAAGTTGATCGATCGTCATTAGTCATCTTACCG CTGCACGCACACCATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCCAGA AGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTCTTT CCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGCCCA GCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGACCC AAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGCAAC ATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGGCGG AATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCTTCT TCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTGTGC GACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTCCAC GGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCGATC GGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTATGTG TCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATTCAC GGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCCAGG CATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCACATC AAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACTCTT TGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGTCGG CAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCATCCC GAGAGATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAGCTT GATCTGCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTGTCC ATCACAGCGCAGTGCTGGGACCCAATGTGGCGATTGGACCTGGAGTGACA ATTGGACCAGGTGTGCGCATTCGCGAATCGATTGTTTTGGAGCAGGCACA GATCCTGGACCATACGCTCGTGCTGCACTCTATTGTGGGCAGGGGCTCCA CCATTGGAGCTTGGGCTCGAGTCGAGGGCACACCTAGTGATCCCGATCCC AACAAACCCTTTGCCAAAATGGAGAACCCACCGCTTTTCAACAACGAGGG CAAGCTAAACCCCTCGATAACCATACTGGGCTGTTTCGTGCAGGTGCCCG CCGAGAAAATCCTGCTGAACAGCATTGTACTGCCGCACAAGGAGCTCAGT CGCAGCTTCAAAAACGAGATCATCTTGTGAGAATGATTTTATTTTTTATC TTCGCTCTGTGTCCCTATCAGTATGTCATTTTATATGTTTATATTGTGCT ATATTCTGAAAAACTCCCTATTAAATGTGTCTTATCCTCTGCAGCCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8207-RA | 1785 | CG8207-RA | 114..1659 | 3..1548 | 7730 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 11565024..11565728 | 1064..360 | 3525 | 100 | Minus |
chr2R | 21145070 | chr2R | 11565790..11566150 | 363..3 | 1790 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 11564700..11564966 | 1330..1064 | 1335 | 100 | Minus |
chr2R | 21145070 | chr2R | 11564430..11564647 | 1546..1329 | 1090 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 15677812..15678516 | 1064..360 | 3525 | 100 | Minus |
2R | 25286936 | 2R | 15678578..15678938 | 363..3 | 1805 | 100 | Minus |
2R | 25286936 | 2R | 15677488..15677754 | 1330..1064 | 1335 | 100 | Minus |
2R | 25286936 | 2R | 15677216..15677435 | 1548..1329 | 1100 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 15679011..15679715 | 1064..360 | 3525 | 100 | Minus |
2R | 25260384 | 2R | 15679777..15680137 | 363..3 | 1805 | 100 | Minus |
2R | 25260384 | 2R | 15678687..15678953 | 1330..1064 | 1335 | 100 | Minus |
2R | 25260384 | 2R | 15678415..15678634 | 1548..1329 | 1100 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 331..373 | 122 | 79.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 11564430..11564646 | 1330..1546 | 100 | <- | Minus |
chr2R | 11564701..11564965 | 1065..1329 | 100 | <- | Minus |
chr2R | 11565024..11565726 | 362..1064 | 100 | <- | Minus |
chr2R | 11565792..11566151 | 1..361 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 1..1317 | 114..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 1..1317 | 114..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 1..1317 | 114..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 1..1317 | 114..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 1..1317 | 114..1430 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 2..1545 | 3..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 2..1545 | 3..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 17..1562 | 1..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 2..1545 | 3..1546 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8207-RA | 17..1562 | 1..1546 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15678580..15678939 | 1..361 | 99 | Minus | |
2R | 15677218..15677434 | 1330..1546 | 100 | <- | Minus |
2R | 15677489..15677753 | 1065..1329 | 100 | <- | Minus |
2R | 15677812..15678514 | 362..1064 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15678580..15678939 | 1..361 | 99 | Minus | |
2R | 15677218..15677434 | 1330..1546 | 100 | <- | Minus |
2R | 15677489..15677753 | 1065..1329 | 100 | <- | Minus |
2R | 15677812..15678514 | 362..1064 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15678580..15678939 | 1..361 | 99 | Minus | |
2R | 15677218..15677434 | 1330..1546 | 100 | <- | Minus |
2R | 15677489..15677753 | 1065..1329 | 100 | <- | Minus |
2R | 15677812..15678514 | 362..1064 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 11564723..11564939 | 1330..1546 | 100 | <- | Minus |
arm_2R | 11564994..11565258 | 1065..1329 | 100 | <- | Minus |
arm_2R | 11565317..11566019 | 362..1064 | 100 | <- | Minus |
arm_2R | 11566085..11566444 | 1..361 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 15678417..15678633 | 1330..1546 | 100 | <- | Minus |
2R | 15678688..15678952 | 1065..1329 | 100 | <- | Minus |
2R | 15679011..15679713 | 362..1064 | 100 | <- | Minus |
2R | 15679779..15680138 | 1..361 | 99 | Minus |
Translation from 113 to 1429
> RE21160.hyp MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8207-PA | 438 | CG8207-PA | 1..438 | 1..438 | 2324 | 100 | Plus |
CG1129-PE | 369 | CG1129-PE | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PD | 369 | CG1129-PD | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PA | 369 | CG1129-PA | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PB | 369 | CG1129-PB | 12..361 | 3..431 | 386 | 27.9 | Plus |
Translation from 113 to 1429
> RE21160.pep MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIIL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13377-PA | 438 | GF13377-PA | 1..438 | 1..438 | 2279 | 96.8 | Plus |
Dana\GF18913-PA | 371 | GF18913-PA | 14..363 | 3..431 | 398 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22341-PA | 438 | GG22341-PA | 1..438 | 1..438 | 2332 | 99.1 | Plus |
Dere\GG12578-PA | 369 | GG12578-PA | 12..361 | 3..431 | 398 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22966-PA | 438 | GH22966-PA | 1..438 | 1..438 | 2110 | 90.2 | Plus |
Dgri\GH23007-PA | 371 | GH23007-PA | 14..363 | 3..431 | 380 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG8207-PA | 438 | CG8207-PA | 1..438 | 1..438 | 2324 | 100 | Plus |
CG1129-PE | 369 | CG1129-PE | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PD | 369 | CG1129-PD | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PA | 369 | CG1129-PA | 12..361 | 3..431 | 386 | 27.9 | Plus |
CG1129-PB | 369 | CG1129-PB | 12..361 | 3..431 | 386 | 27.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18453-PA | 438 | GI18453-PA | 1..438 | 1..438 | 2112 | 90.6 | Plus |
Dmoj\GI10243-PA | 371 | GI10243-PA | 14..363 | 3..431 | 400 | 28.7 | Plus |
Dmoj\GI18780-PA | 161 | GI18780-PA | 14..134 | 3..132 | 153 | 32.3 | Plus |
Dmoj\GI18813-PA | 161 | GI18813-PA | 14..134 | 3..132 | 153 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11863-PA | 438 | GL11863-PA | 1..438 | 1..438 | 2160 | 93.4 | Plus |
Dper\GL21618-PA | 371 | GL21618-PA | 14..363 | 3..431 | 407 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20898-PA | 438 | GA20898-PA | 1..438 | 1..438 | 2160 | 93.4 | Plus |
Dpse\GA10892-PA | 371 | GA10892-PA | 14..363 | 3..431 | 407 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20127-PA | 438 | GM20127-PA | 1..438 | 1..438 | 2347 | 99.8 | Plus |
Dsec\GM10777-PA | 369 | GM10777-PA | 12..361 | 3..431 | 401 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25606-PA | 438 | GD25606-PA | 1..438 | 1..438 | 2339 | 99.3 | Plus |
Dsim\GD19749-PA | 202 | GD19749-PA | 11..186 | 2..189 | 276 | 33 | Plus |
Dsim\GD19750-PA | 132 | GD19750-PA | 25..124 | 303..431 | 153 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21538-PA | 436 | GJ21538-PA | 1..436 | 1..438 | 2167 | 91.6 | Plus |
Dvir\GJ11048-PA | 371 | GJ11048-PA | 14..363 | 3..431 | 391 | 28.9 | Plus |