Clone RE21160 Report

Search the DGRC for RE21160

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:211
Well:60
Vector:pFlc-1
Associated Gene/TranscriptCG8207-RA
Protein status:RE21160.pep: gold
Preliminary Size:1347
Sequenced Size:1562

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8207 2002-01-01 Sim4 clustering to Release 2
CG8207 2002-02-22 Blastp of sequenced clone
CG8207 2003-01-01 Sim4 clustering to Release 3
CG8207 2008-04-29 Release 5.5 accounting
CG8207 2008-08-15 Release 5.9 accounting
CG8207 2008-12-18 5.12 accounting

Clone Sequence Records

RE21160.complete Sequence

1562 bp (1562 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084132

> RE21160.complete
TGGTAGAGCGGAGTATTTTCTAGCTGGCAACGTAAACATAAAATATATCT
TTCTGAGAACCTGGCCACAAGTTGATCGATCGTCATTAGTCATCTTACCG
CTGCACGCACACCATGCTAAAGGCCGTTATCCTGATCGGCGGTCCCCAGA
AGGGCACCCGCTTTCGCCCCCTTTCGCTTGACACGCCCAAGCCGCTCTTT
CCATTGGCCGGTCGTCCTCTAATCGCCCATCATATTGAGGCCTGCGCCCA
GCTGCCCGATATACGCGAGATCCTGATCATCGGCTATTATCCGCAGACCC
AAATGGAGGGATTCGTGGGCGACATGCAGGCCCTGTACAGCAGCAGCAAC
ATCAACATCAGGTACCTTCAGGAGTTCACTGCCTTGGGCACTGCAGGCGG
AATGTACCATTTCCGGGATCAGATTAGAGCTGGTAACCCCCGAGCCTTCT
TCGTATTGAACGGAGATGTTTGCGCTGATTTTCCGCTGCAAGAACTGTGC
GACTTTCACGAGAAGCGCCCGGCGAGTGCTCTGGTTACTATCATGTCCAC
GGAGGCGACACGTCAGCAATCCTTGCACTACGGCTGTCTGGTTTTCGATC
GGAGTAGCGGAGCCGTTTCGCATTATGTAGAAAAGCCTAGCTCCTATGTG
TCCACATTTATCAACTGTGGGGTGTATGTCTGTTCCATGGATATATTCAC
GGTGTTGGCACAGATTTTTCATTCGAGAGGTCAGGAGTACAGCTGCCAGG
CATTTTGCAATGGAAACGGAAATGGAAATGGACGAGAGCAGGGGCACATC
AAGTGGGAACAGGAGGTGCTTACGCCCCTGGCTGGAACCGATAAACTCTT
TGCCATGCCAGTGCCTAACTGGTGGTCCCAACTGAAGACTGCTGGGTCGG
CAATCTACGCAAATCGTCATTATCTTGGCCTGTACAAGAAAACGCATCCC
GAGAGATTGGCCAATGTGGGGATCAAGCGCGGAGAAGGGGACGGCAGCTT
GATCTGCACAGTGCATCCGGACGTCTATGTGCATCCCAGTGCCACTGTCC
ATCACAGCGCAGTGCTGGGACCCAATGTGGCGATTGGACCTGGAGTGACA
ATTGGACCAGGTGTGCGCATTCGCGAATCGATTGTTTTGGAGCAGGCACA
GATCCTGGACCATACGCTCGTGCTGCACTCTATTGTGGGCAGGGGCTCCA
CCATTGGAGCTTGGGCTCGAGTCGAGGGCACACCTAGTGATCCCGATCCC
AACAAACCCTTTGCCAAAATGGAGAACCCACCGCTTTTCAACAACGAGGG
CAAGCTAAACCCCTCGATAACCATACTGGGCTGTTTCGTGCAGGTGCCCG
CCGAGAAAATCCTGCTGAACAGCATTGTACTGCCGCACAAGGAGCTCAGT
CGCAGCTTCAAAAACGAGATCATCTTGTGAGAATGATTTTATTTTTTATC
TTCGCTCTGTGTCCCTATCAGTATGTCATTTTATATGTTTATATTGTGCT
ATATTCTGAAAAACTCCCTATTAAATGTGTCTTATCCTCTGCAGCCAAAA
AAAAAAAAAAAA

RE21160.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-RA 1785 CG8207-RA 114..1659 3..1548 7730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11565024..11565728 1064..360 3525 100 Minus
chr2R 21145070 chr2R 11565790..11566150 363..3 1790 99.7 Minus
chr2R 21145070 chr2R 11564700..11564966 1330..1064 1335 100 Minus
chr2R 21145070 chr2R 11564430..11564647 1546..1329 1090 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15677812..15678516 1064..360 3525 100 Minus
2R 25286936 2R 15678578..15678938 363..3 1805 100 Minus
2R 25286936 2R 15677488..15677754 1330..1064 1335 100 Minus
2R 25286936 2R 15677216..15677435 1548..1329 1100 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15679011..15679715 1064..360 3525 100 Minus
2R 25260384 2R 15679777..15680137 363..3 1805 100 Minus
2R 25260384 2R 15678687..15678953 1330..1064 1335 100 Minus
2R 25260384 2R 15678415..15678634 1548..1329 1100 100 Minus
Blast to na_te.dros performed 2019-03-16 03:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9175..9216 331..373 122 79.1 Plus

RE21160.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:03 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11564430..11564646 1330..1546 100 <- Minus
chr2R 11564701..11564965 1065..1329 100 <- Minus
chr2R 11565024..11565726 362..1064 100 <- Minus
chr2R 11565792..11566151 1..361 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:32 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 114..1430 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:11 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 114..1430 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:25 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 114..1430 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:16 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 114..1430 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:43 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 1..1317 114..1430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:14 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 2..1545 3..1546 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:11 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 2..1545 3..1546 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:25 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 17..1562 1..1546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:16 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 2..1545 3..1546 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:43 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
CG8207-RA 17..1562 1..1546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:03 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15678580..15678939 1..361 99   Minus
2R 15677218..15677434 1330..1546 100 <- Minus
2R 15677489..15677753 1065..1329 100 <- Minus
2R 15677812..15678514 362..1064 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:03 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15678580..15678939 1..361 99   Minus
2R 15677218..15677434 1330..1546 100 <- Minus
2R 15677489..15677753 1065..1329 100 <- Minus
2R 15677812..15678514 362..1064 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:03 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15678580..15678939 1..361 99   Minus
2R 15677218..15677434 1330..1546 100 <- Minus
2R 15677489..15677753 1065..1329 100 <- Minus
2R 15677812..15678514 362..1064 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:25 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11564723..11564939 1330..1546 100 <- Minus
arm_2R 11564994..11565258 1065..1329 100 <- Minus
arm_2R 11565317..11566019 362..1064 100 <- Minus
arm_2R 11566085..11566444 1..361 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:27 Download gff for RE21160.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15678417..15678633 1330..1546 100 <- Minus
2R 15678688..15678952 1065..1329 100 <- Minus
2R 15679011..15679713 362..1064 100 <- Minus
2R 15679779..15680138 1..361 99   Minus

RE21160.hyp Sequence

Translation from 113 to 1429

> RE21160.hyp
MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI
REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF
RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR
QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ
IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV
PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV
HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH
TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP
SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIIL*

RE21160.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-PA 438 CG8207-PA 1..438 1..438 2324 100 Plus
CG1129-PE 369 CG1129-PE 12..361 3..431 386 27.9 Plus
CG1129-PD 369 CG1129-PD 12..361 3..431 386 27.9 Plus
CG1129-PA 369 CG1129-PA 12..361 3..431 386 27.9 Plus
CG1129-PB 369 CG1129-PB 12..361 3..431 386 27.9 Plus

RE21160.pep Sequence

Translation from 113 to 1429

> RE21160.pep
MLKAVILIGGPQKGTRFRPLSLDTPKPLFPLAGRPLIAHHIEACAQLPDI
REILIIGYYPQTQMEGFVGDMQALYSSSNINIRYLQEFTALGTAGGMYHF
RDQIRAGNPRAFFVLNGDVCADFPLQELCDFHEKRPASALVTIMSTEATR
QQSLHYGCLVFDRSSGAVSHYVEKPSSYVSTFINCGVYVCSMDIFTVLAQ
IFHSRGQEYSCQAFCNGNGNGNGREQGHIKWEQEVLTPLAGTDKLFAMPV
PNWWSQLKTAGSAIYANRHYLGLYKKTHPERLANVGIKRGEGDGSLICTV
HPDVYVHPSATVHHSAVLGPNVAIGPGVTIGPGVRIRESIVLEQAQILDH
TLVLHSIVGRGSTIGAWARVEGTPSDPDPNKPFAKMENPPLFNNEGKLNP
SITILGCFVQVPAEKILLNSIVLPHKELSRSFKNEIIL*

RE21160.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13377-PA 438 GF13377-PA 1..438 1..438 2279 96.8 Plus
Dana\GF18913-PA 371 GF18913-PA 14..363 3..431 398 28.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22341-PA 438 GG22341-PA 1..438 1..438 2332 99.1 Plus
Dere\GG12578-PA 369 GG12578-PA 12..361 3..431 398 29.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22966-PA 438 GH22966-PA 1..438 1..438 2110 90.2 Plus
Dgri\GH23007-PA 371 GH23007-PA 14..363 3..431 380 28.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8207-PA 438 CG8207-PA 1..438 1..438 2324 100 Plus
CG1129-PE 369 CG1129-PE 12..361 3..431 386 27.9 Plus
CG1129-PD 369 CG1129-PD 12..361 3..431 386 27.9 Plus
CG1129-PA 369 CG1129-PA 12..361 3..431 386 27.9 Plus
CG1129-PB 369 CG1129-PB 12..361 3..431 386 27.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18453-PA 438 GI18453-PA 1..438 1..438 2112 90.6 Plus
Dmoj\GI10243-PA 371 GI10243-PA 14..363 3..431 400 28.7 Plus
Dmoj\GI18780-PA 161 GI18780-PA 14..134 3..132 153 32.3 Plus
Dmoj\GI18813-PA 161 GI18813-PA 14..134 3..132 153 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11863-PA 438 GL11863-PA 1..438 1..438 2160 93.4 Plus
Dper\GL21618-PA 371 GL21618-PA 14..363 3..431 407 28.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20898-PA 438 GA20898-PA 1..438 1..438 2160 93.4 Plus
Dpse\GA10892-PA 371 GA10892-PA 14..363 3..431 407 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20127-PA 438 GM20127-PA 1..438 1..438 2347 99.8 Plus
Dsec\GM10777-PA 369 GM10777-PA 12..361 3..431 401 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25606-PA 438 GD25606-PA 1..438 1..438 2339 99.3 Plus
Dsim\GD19749-PA 202 GD19749-PA 11..186 2..189 276 33 Plus
Dsim\GD19750-PA 132 GD19750-PA 25..124 303..431 153 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21538-PA 436 GJ21538-PA 1..436 1..438 2167 91.6 Plus
Dvir\GJ11048-PA 371 GJ11048-PA 14..363 3..431 391 28.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17960-PA 434 GK17960-PA 1..434 1..438 2205 93.6 Plus
Dwil\GK12822-PA 371 GK12822-PA 14..363 3..431 401 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14141-PA 438 GE14141-PA 1..438 1..438 2331 98.6 Plus
Dyak\GE25436-PA 369 GE25436-PA 12..361 3..431 397 28.8 Plus