![]() | BDGP Sequence Production Resources |
Search the DGRC for RE21178
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 211 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | phr-RA |
Protein status: | RE21178.pep: gold |
Preliminary Size: | 1805 |
Sequenced Size: | 1722 |
Gene | Date | Evidence |
---|---|---|
CG11205 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11205 | 2002-02-22 | Blastp of sequenced clone |
CG11205 | 2003-01-01 | Sim4 clustering to Release 3 |
phr | 2008-04-29 | Release 5.5 accounting |
phr | 2008-08-15 | Release 5.9 accounting |
phr | 2008-12-18 | 5.12 accounting |
1722 bp (1722 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084133
> RE21178.complete ATCAGTTATGTTTACACTTGCTTCATATTGGCGCGAATCATTCAAGATTG TTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAGGCAGGTCCT TCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCCCAAAAGTGA CCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTTTGTTGGTTT CTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCACTTGGAACAC CAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTTTCGAAAGAA ACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAATCCAGCCTAG GCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAGGACAACTGG GCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATTACCCTTAAC TGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTATCAGGCACT ACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAGTGTCGCGCC CTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGAAAAGTTACC ACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTGACTTTGCTC CGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAGGCACTGCCC AAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGTCCCCTTGTG GGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCCGCAACAAGA TCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCAGTTGTGCGG CATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGACTGGTCAGC TGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGGTGCAGTGGG CCAAGCCGGGGTATAAAGCAGCCTGCCAGCAGCTCTACGAGTTCTGCAGT CGTCGTTTGCGCCATTTCAATGACAAACGAAACGATCCCACGGCAGACGC CTTGTCCGGACTCTCGCCGTGGCTGCACTTTGGTCATATTTCGGCTCAGC GCTGTGCACTGGAGGTGCAGCGGTTTCGAGGACAACACAAAGCCTCGGCG GATGCGTTTTGCGAGGAGGCCATTGTGCGCCGCGAACTGGCGGATAACTT TTGCTTCTACAACGAGCACTATGATAGTCTTAAAGGTCTAAGTTCTTGGG CATATCAAACGCTAGATGCACATCGCAAGGACAAGCGAGATCCCTGCTAC AGCTTAGAAGAACTAGAAAAGTCTCTCACTTATGACGACCTGTGGAACTC GGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCTTTTTGCGCA TGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCG TTGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGA CCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACA TGGGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTAGGTACATGAACTAT CAGGGATGCCGTCGCAAATTCGATGTAAATGCCTTTGTCATGCGATACGG CGGTAAGGTGCACAAGAAGAAATAAAACGTTTTCGGATTTGCCTTTGTTT TGAATACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phr-RA | 1841 | phr-RA | 137..1839 | 3..1705 | 8515 | 100 | Plus |
phr-RB | 1747 | phr-RB | 90..1745 | 50..1705 | 8280 | 100 | Plus |
nc_5029.a | 767 | nc_5029.a | 1..765 | 941..1705 | 3825 | 100 | Plus |
phr-RB | 1747 | phr-RB | 1..37 | 15..51 | 185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3712921..3714192 | 50..1321 | 6345 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 3714253..3714638 | 1320..1705 | 1930 | 100 | Plus |
chr2R | 21145070 | chr2R | 3717363..3717748 | 1320..1705 | 1930 | 100 | Plus |
chr2R | 21145070 | chr2R | 3717170..3717302 | 1189..1321 | 665 | 100 | Plus |
chr2R | 21145070 | chr2R | 3712820..3712868 | 3..51 | 245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7825600..7826871 | 50..1321 | 6360 | 100 | Plus |
2R | 25286936 | 2R | 7826932..7827321 | 1320..1709 | 1935 | 99.7 | Plus |
2R | 25286936 | 2R | 7830042..7830431 | 1320..1709 | 1935 | 99.7 | Plus |
2R | 25286936 | 2R | 7829849..7829981 | 1189..1321 | 665 | 100 | Plus |
2R | 25286936 | 2R | 7825499..7825547 | 3..51 | 245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7826799..7828070 | 50..1321 | 6360 | 100 | Plus |
2R | 25260384 | 2R | 7831241..7831630 | 1320..1709 | 1935 | 99.7 | Plus |
2R | 25260384 | 2R | 7828131..7828520 | 1320..1709 | 1935 | 99.7 | Plus |
2R | 25260384 | 2R | 7831048..7831180 | 1189..1321 | 665 | 100 | Plus |
2R | 25260384 | 2R | 7826698..7826746 | 3..51 | 245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3712817..3712866 | 1..49 | 98 | -> | Plus |
chr2R | 3712921..3714192 | 50..1321 | 99 | -> | Plus |
chr2R | 3714255..3714640 | 1322..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 1..1668 | 8..1675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 1..1668 | 8..1675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 1..1668 | 8..1675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 1..1668 | 8..1675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 1..1668 | 8..1675 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 5..1712 | 1..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 5..1712 | 1..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 208..1915 | 1..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 5..1712 | 1..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
phr-RA | 208..1915 | 1..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7825496..7825545 | 1..49 | 98 | -> | Plus |
2R | 7825600..7826871 | 50..1321 | 100 | -> | Plus |
2R | 7826934..7827319 | 1322..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7825496..7825545 | 1..49 | 98 | -> | Plus |
2R | 7825600..7826871 | 50..1321 | 100 | -> | Plus |
2R | 7826934..7827319 | 1322..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7825496..7825545 | 1..49 | 98 | -> | Plus |
2R | 7825600..7826871 | 50..1321 | 100 | -> | Plus |
2R | 7826934..7827319 | 1322..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3713001..3713050 | 1..49 | 98 | -> | Plus |
arm_2R | 3713105..3714376 | 50..1321 | 100 | -> | Plus |
arm_2R | 3714439..3714824 | 1322..1707 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7826799..7828070 | 50..1321 | 100 | -> | Plus |
2R | 7828133..7828518 | 1322..1707 | 99 | Plus | |
2R | 7826695..7826744 | 1..49 | 98 | -> | Plus |
Translation from 2 to 1674
> RE21178.hyp TVMFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSD QESSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKK RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLT VVFCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLP QFVKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLW VASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSA AYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADA LSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNF CFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNS AQLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRD PNGYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYG GKVHKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phr-PA | 555 | CG11205-PA | 1..555 | 3..557 | 2964 | 100 | Plus |
phr-PB | 535 | CG11205-PB | 1..535 | 23..557 | 2861 | 100 | Plus |
CG18853-PA | 330 | CG18853-PA | 170..330 | 397..557 | 899 | 100 | Plus |
Translation from 7 to 1674
> RE21178.pep MFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQE SSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRV RVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVV FCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQF VKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVA SDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSAAY ASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCF YNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ LQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPN GYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGK VHKKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13637-PA | 538 | GF13637-PA | 1..536 | 21..555 | 2450 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23307-PA | 554 | GG23307-PA | 1..554 | 1..554 | 2851 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21292-PA | 530 | GH21292-PA | 1..528 | 21..555 | 2215 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
phr-PA | 555 | CG11205-PA | 1..555 | 1..555 | 2964 | 100 | Plus |
phr-PB | 535 | CG11205-PB | 1..535 | 21..555 | 2861 | 100 | Plus |
CG18853-PA | 330 | CG18853-PA | 170..330 | 395..555 | 899 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19782-PA | 538 | GI19782-PA | 47..536 | 65..555 | 2206 | 80.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17032-PA | 540 | GL17032-PA | 1..539 | 21..555 | 2378 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10839-PA | 540 | GA10839-PA | 1..539 | 21..555 | 2378 | 81.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20985-PA | 555 | GM20985-PA | 1..555 | 1..555 | 2942 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10512-PA | 555 | GD10512-PA | 1..555 | 1..555 | 2945 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17708-PA | 530 | GJ17708-PA | 20..528 | 47..555 | 2242 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19412-PA | 534 | GK19412-PA | 48..531 | 69..555 | 2139 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19152-PA | 535 | GE19152-PA | 1..535 | 21..555 | 2738 | 93.5 | Plus |