Clone RE21178 Report

Search the DGRC for RE21178

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:211
Well:78
Vector:pFlc-1
Associated Gene/Transcriptphr-RA
Protein status:RE21178.pep: gold
Preliminary Size:1805
Sequenced Size:1722

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11205 2002-01-01 Sim4 clustering to Release 2
CG11205 2002-02-22 Blastp of sequenced clone
CG11205 2003-01-01 Sim4 clustering to Release 3
phr 2008-04-29 Release 5.5 accounting
phr 2008-08-15 Release 5.9 accounting
phr 2008-12-18 5.12 accounting

Clone Sequence Records

RE21178.complete Sequence

1722 bp (1722 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084133

> RE21178.complete
ATCAGTTATGTTTACACTTGCTTCATATTGGCGCGAATCATTCAAGATTG
TTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAGGCAGGTCCT
TCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCCCAAAAGTGA
CCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTTTGTTGGTTT
CTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCACTTGGAACAC
CAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTTTCGAAAGAA
ACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAATCCAGCCTAG
GCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAGGACAACTGG
GCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATTACCCTTAAC
TGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTATCAGGCACT
ACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAGTGTCGCGCC
CTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGAAAAGTTACC
ACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTGACTTTGCTC
CGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAGGCACTGCCC
AAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGTCCCCTTGTG
GGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCCGCAACAAGA
TCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCAGTTGTGCGG
CATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGGACTGGTCAGC
TGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGGTGCAGTGGG
CCAAGCCGGGGTATAAAGCAGCCTGCCAGCAGCTCTACGAGTTCTGCAGT
CGTCGTTTGCGCCATTTCAATGACAAACGAAACGATCCCACGGCAGACGC
CTTGTCCGGACTCTCGCCGTGGCTGCACTTTGGTCATATTTCGGCTCAGC
GCTGTGCACTGGAGGTGCAGCGGTTTCGAGGACAACACAAAGCCTCGGCG
GATGCGTTTTGCGAGGAGGCCATTGTGCGCCGCGAACTGGCGGATAACTT
TTGCTTCTACAACGAGCACTATGATAGTCTTAAAGGTCTAAGTTCTTGGG
CATATCAAACGCTAGATGCACATCGCAAGGACAAGCGAGATCCCTGCTAC
AGCTTAGAAGAACTAGAAAAGTCTCTCACTTATGACGACCTGTGGAACTC
GGCGCAACTGCAGCTGGTACGCGAGGGAAAGATGCACGGCTTTTTGCGCA
TGTACTGGGCCAAAAAGATTCTGGAATGGACAGCGACACCGGAGCATGCG
TTGGAGTACGCAATCCTGCTGAACGACAAGTACAGTCTGGATGGTCGCGA
CCCCAACGGCTATGTGGGCTGCATGTGGTCCATTGGCGGCGTCCATGACA
TGGGCTGGAAGGAGCGGGCTATCTTCGGTAAGGTTAGGTACATGAACTAT
CAGGGATGCCGTCGCAAATTCGATGTAAATGCCTTTGTCATGCGATACGG
CGGTAAGGTGCACAAGAAGAAATAAAACGTTTTCGGATTTGCCTTTGTTT
TGAATACAAAAAAAAAAAAAAA

RE21178.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
phr-RA 1841 phr-RA 137..1839 3..1705 8515 100 Plus
phr-RB 1747 phr-RB 90..1745 50..1705 8280 100 Plus
nc_5029.a 767 nc_5029.a 1..765 941..1705 3825 100 Plus
phr-RB 1747 phr-RB 1..37 15..51 185 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3712921..3714192 50..1321 6345 99.9 Plus
chr2R 21145070 chr2R 3714253..3714638 1320..1705 1930 100 Plus
chr2R 21145070 chr2R 3717363..3717748 1320..1705 1930 100 Plus
chr2R 21145070 chr2R 3717170..3717302 1189..1321 665 100 Plus
chr2R 21145070 chr2R 3712820..3712868 3..51 245 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7825600..7826871 50..1321 6360 100 Plus
2R 25286936 2R 7826932..7827321 1320..1709 1935 99.7 Plus
2R 25286936 2R 7830042..7830431 1320..1709 1935 99.7 Plus
2R 25286936 2R 7829849..7829981 1189..1321 665 100 Plus
2R 25286936 2R 7825499..7825547 3..51 245 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7826799..7828070 50..1321 6360 100 Plus
2R 25260384 2R 7831241..7831630 1320..1709 1935 99.7 Plus
2R 25260384 2R 7828131..7828520 1320..1709 1935 99.7 Plus
2R 25260384 2R 7831048..7831180 1189..1321 665 100 Plus
2R 25260384 2R 7826698..7826746 3..51 245 100 Plus
Blast to na_te.dros performed on 2019-03-15 16:18:50 has no hits.

RE21178.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:36 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3712817..3712866 1..49 98 -> Plus
chr2R 3712921..3714192 50..1321 99 -> Plus
chr2R 3714255..3714640 1322..1707 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:33 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 8..1675 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:13 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 8..1675 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:28 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 8..1675 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:17 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 8..1675 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:46 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 1..1668 8..1675 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:16 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 5..1712 1..1707 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:13 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 5..1712 1..1707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:28 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 208..1915 1..1707 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:18 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 5..1712 1..1707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:46 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
phr-RA 208..1915 1..1707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:36 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7825496..7825545 1..49 98 -> Plus
2R 7825600..7826871 50..1321 100 -> Plus
2R 7826934..7827319 1322..1707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:36 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7825496..7825545 1..49 98 -> Plus
2R 7825600..7826871 50..1321 100 -> Plus
2R 7826934..7827319 1322..1707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:36 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7825496..7825545 1..49 98 -> Plus
2R 7825600..7826871 50..1321 100 -> Plus
2R 7826934..7827319 1322..1707 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:28 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3713001..3713050 1..49 98 -> Plus
arm_2R 3713105..3714376 50..1321 100 -> Plus
arm_2R 3714439..3714824 1322..1707 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:28 Download gff for RE21178.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7826799..7828070 50..1321 100 -> Plus
2R 7828133..7828518 1322..1707 99   Plus
2R 7826695..7826744 1..49 98 -> Plus

RE21178.hyp Sequence

Translation from 2 to 1674

> RE21178.hyp
TVMFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSD
QESSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKK
RVRVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLT
VVFCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLP
QFVKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLW
VASDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSA
AYASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADA
LSGLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNF
CFYNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNS
AQLQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRD
PNGYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYG
GKVHKKK*

RE21178.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
phr-PA 555 CG11205-PA 1..555 3..557 2964 100 Plus
phr-PB 535 CG11205-PB 1..535 23..557 2861 100 Plus
CG18853-PA 330 CG18853-PA 170..330 397..557 899 100 Plus

RE21178.pep Sequence

Translation from 7 to 1674

> RE21178.pep
MFTLASYWRESFKIVLPLQAMKRTKAQKAGPSKKAAKNEKASSEPKSDQE
SSDEEASTSKALLVSKPDYQNFEQFLTHLEHQRVCTAANIQEFSFRKKRV
RVLSKTEDVKESSLGGVVYWMSRDGRVQDNWALLFAQRLALKLELPLTVV
FCLVPKFLNATIRHYKFMMGGLQEVEQQCRALDIPFHLLMGSAVEKLPQF
VKSKDIGAVVCDFAPLRLPRQWVEDVGKALPKSVPLVQVDAHNVVPLWVA
SDKQEYAARTIRNKINSKLGEYLSVFPPVVRHPHGTGCKNVNTVDWSAAY
ASLQCDMEVDEVQWAKPGYKAACQQLYEFCSRRLRHFNDKRNDPTADALS
GLSPWLHFGHISAQRCALEVQRFRGQHKASADAFCEEAIVRRELADNFCF
YNEHYDSLKGLSSWAYQTLDAHRKDKRDPCYSLEELEKSLTYDDLWNSAQ
LQLVREGKMHGFLRMYWAKKILEWTATPEHALEYAILLNDKYSLDGRDPN
GYVGCMWSIGGVHDMGWKERAIFGKVRYMNYQGCRRKFDVNAFVMRYGGK
VHKKK*

RE21178.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13637-PA 538 GF13637-PA 1..536 21..555 2450 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23307-PA 554 GG23307-PA 1..554 1..554 2851 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21292-PA 530 GH21292-PA 1..528 21..555 2215 75.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
phr-PA 555 CG11205-PA 1..555 1..555 2964 100 Plus
phr-PB 535 CG11205-PB 1..535 21..555 2861 100 Plus
CG18853-PA 330 CG18853-PA 170..330 395..555 899 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19782-PA 538 GI19782-PA 47..536 65..555 2206 80.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17032-PA 540 GL17032-PA 1..539 21..555 2378 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10839-PA 540 GA10839-PA 1..539 21..555 2378 81.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20985-PA 555 GM20985-PA 1..555 1..555 2942 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10512-PA 555 GD10512-PA 1..555 1..555 2945 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17708-PA 530 GJ17708-PA 20..528 47..555 2242 78.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19412-PA 534 GK19412-PA 48..531 69..555 2139 77.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19152-PA 535 GE19152-PA 1..535 21..555 2738 93.5 Plus