Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE21254.complete Sequence
1292 bp assembled on 2009-09-15
GenBank Submission: BT099754.1
> RE21254.complete
TCTGCTTATCGCAATCGCCGCCTGCCAAATGCCAGGCGATAGCGCGTAGA
ACTCTTGGCGCTAATAAAGATCTCAGTAGTAAGCGGTGTGAGGTGGTGAG
GGGTGACATTAGGCGGTGGTGCAGGGCAGCCCTCCTGGCCAAATCCGCTG
CTTTGTGAACTCAAGCTGACAGAACGCTATTTCCAATTGTGCTATTAATC
TGCCACATTTGCACTTCCGCGGAAAAGAGTCGGCGGGCGGATGTGATCTC
TTTCGCTCGTCAGTTGGCTGACTCGCTCTGCAGGGGTGATTTGCGGGCGA
GCGAGTGAGACAGAGCGAGGCAGAGTGGTAACGCTTGGCTAACCTGAAAA
TAGAAACAATCGAAATAAAAATACATTCTCTTCATGCTCTCGTCTAATAA
AAAACCCCAAAAGCAAAACGTTTTCCATTTAAAATGTCGTCGCAACTGCC
AGCGGGAAGTGGACGTCGAGAGTGGCAAGTGTGTGGGGCAAACTCCGGCC
AGCGGCCAATGGCGGTTGGCCGAGGCCACGCCCCGTGGCTCAATTACCGA
CCAGTGCTGCCCATCGGCGGGCAGAGCGAAACCTGTTTCCACGAGCGAGA
GGCAGTCAGGCGCATGTGCGATCAGAGCGGGATGGATGGCTCAAGGGTGG
ACCAACCAGAAGAGGCAGGTTGCTGGTATTATGGTAGGTTAGGTTCAAAC
AAGGTGGCAAACTGGCTCTTAACCGAAATAGGAAGGAAGTCGGCAGCGGC
GTCGACGTCGGGCAACTGGTTTGACTTGTTTCCGGCTCACTCCAACAGCC
CAAACCCACCAGCAATCGGCAGAGGCAGCCAAGTCGGCAGAGGGCAGGCA
GAGCAGCGGCCGTCGGCACAATTTGATTGCATTTATGAAAAGCGTTTTCG
CCCGCTAGCACGCGTCCGCTCCCAGCTCGCAATTCGCCATCCGTAATCCG
TAAACTTTAATCCGTAGACCGTAATCCGTGAATCCAAAGCAGTTCTCAGT
TGGAATTTCCCGCAACGGGTAGTGCTTAAGCGCGGAAACTGAATTGAAAT
CAATCGGACGATTAGTGTGTGCTTCGCGGTTGAAACACTCTACATCTAAC
TATTAAGAGAAAAGAGTGCCCAATAAGATTCGAAAAGTGCAGTGAGCGAG
CTCCAAATTGGCGCCACTAATTGCCAAAATGTCCAGCCACGAGGAGGATG
ACCATGAGCACGAGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATC
CACGTGGATGTGGACTCGGACTCGCGGATGTCATGTGGCAGC
RE21254.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
C15.d | 3199 | C15.d | 434..1725 | 1..1292 | 6460 | 100 | Plus |
C15.c | 2354 | C15.c | 1..880 | 413..1292 | 4400 | 100 | Plus |
C15.f | 1599 | C15.f | 1..611 | 682..1292 | 3055 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 17322849..17324140 | 1..1292 | 6430 | 99.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21499080..21500371 | 1..1292 | 6460 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 21239911..21241202 | 1..1292 | 6460 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 21:32:00 has no hits.
RE21254.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:32:46 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 17322849..17324140 | 1..1292 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:22 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31179-RA | 1..513 | 434..946 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:12:21 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..114 | 1179..1292 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:49 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..114 | 1179..1292 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:29 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..114 | 1179..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-15 13:50:26 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31179-RA | 1..1011 | 1..1011 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:12:21 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..117 | 1176..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:49 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..386 | 907..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:29 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
C15-RA | 1..386 | 907..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:46 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21499080..21500371 | 1..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:46 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21499080..21500371 | 1..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:32:46 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21499080..21500371 | 1..1292 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:49 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17324802..17326093 | 1..1292 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:03:18 Download gff for
RE21254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21239911..21241202 | 1..1292 | 100 | | Plus |
RE21254.pep Sequence
Translation from 433 to 945
> RE21254.pep
MSSQLPAGSGRREWQVCGANSGQRPMAVGRGHAPWLNYRPVLPIGGQSET
CFHEREAVRRMCDQSGMDGSRVDQPEEAGCWYYGRLGSNKVANWLLTEIG
RKSAAASTSGNWFDLFPAHSNSPNPPAIGRGSQVGRGQAEQRPSAQFDCI
YEKRFRPLARVRSQLAIRHP*
RE21254.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:25:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24653-PA | 173 | GG24653-PA | 1..166 | 1..170 | 765 | 87.6 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM10428-PA | 170 | GM10428-PA | 1..170 | 1..170 | 870 | 96.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD19429-PA | 170 | GD19429-PA | 1..170 | 1..170 | 869 | 96.5 | Plus |
RE21254.hyp Sequence
Translation from 433 to 945
> RE21254.hyp
MSSQLPAGSGRREWQVCGANSGQRPMAVGRGHAPWLNYRPVLPIGGQSET
CFHEREAVRRMCDQSGMDGSRVDQPEEAGCWYYGRLGSNKVANWLLTEIG
RKSAAASTSGNWFDLFPAHSNSPNPPAIGRGSQVGRGQAEQRPSAQFDCI
YEKRFRPLARVRSQLAIRHP*
Sequence RE21254.hyp has no blast hits.