Clone RE21276 Report

Search the DGRC for RE21276

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:212
Well:76
Vector:pFlc-1
Associated Gene/TranscriptMnn1-RB
Protein status:RE21276.pep: gold
Preliminary Size:2442
Sequenced Size:1939

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13778 2002-01-01 Sim4 clustering to Release 2
CG13778 2002-02-22 Blastp of sequenced clone
CG13778 2003-01-01 Sim4 clustering to Release 3
Mnn1 2008-04-29 Release 5.5 accounting
Mnn1 2008-08-15 Release 5.9 accounting
Mnn1 2008-12-18 5.12 accounting

Clone Sequence Records

RE21276.complete Sequence

1939 bp (1939 high quality bases) assembled on 2005-08-22

GenBank Submission: AY084134

> RE21276.complete
GGCGCGTGCTGGGTGTGGACACACTGGCACGCAGCGAAGTAAACACAACG
CAATATTTCGTCGGAATTTCACCTGGTTTTCACCTGGTCTGTCGCGCAAT
AAAACCGCCCAATTGGTGCCGAAATTACGGCACAGATAATGCGCGAATCA
ATTGGCATACGGCGCGATGAGATAATCGGTCGATTCGGGCGGCAAAAAGC
AACTGCGTGTCAAGTGGAAAATCAGTGAACGTGAAGGGGCAATTATTCCA
TTAAATCATTTGGCAATCAGAAGAACCCCTGCCTGCAACCATGTCCACGA
TTACCAGAAGCGCTAGCGCAAGTCCTATGGCGCTGAACGGCGTCATCGAT
GCCAGCCTGTTCCCCCTAAAGTCCACGGCCGATGTTATCAATCTGTTCCG
TCGCGCTCTAACCTCTGGAATCGAGCCTGATCTCACCCTGCTCTCCATTG
TCGTTGGATACATCGAGCTGTCTTTGACGACGGGAGAGGCTGCTGCGCAG
GCCGCTCAAGCCGCCGCGGCCGCAGTCGCAGCAGGTGACATTAGTCAGGC
GACGACAGGTGGAAATGACATCATCATGGGCAACAGCGTCCCGTTTCCAG
TTGTTACCCACGAACTGATCGCCGGGCTGTATAAGAAGTTCCAGACGATC
CTGTCGGTGGTCGAGAAGCCCAAGCCCCACCGCCAAGCCACCCGCGAGGT
GATCAAGAAGGTGTCGGATGTGATCTGGAACTCGCTGATCCGCAGCAGCT
ACAAGGATCGGGCTCACTTGCAAAACCTCTACAGCTATCTGTCCGGCAAC
AAGTTGGACTGCTTCGGCGTTGCTCTGGCTGTGGTGGCGGGTTGCCAGTT
GCTTGGCTACAAGGACGTGCGACTGGCCATCTCCGAGGATCATGCCTGGG
TGGTATTTGGCCAAAAGCGCGTGGAAACAATCGAAGTGACATGGCACGGC
AAAGGAAGCGAGGATAAGCGGGGGCAGGATATTCGTCCCGGGATCGAATC
CGGATCCTGGCTCTACTTGGGTGGCCTGGCGGTGGTTTGCGAGCGTGGCA
TGGAAGTGGCGGCCATCTGTGCCGCTCTGAATATTTCATTGACCTCGAAC
AGTGACTGCGTGGAGGTGGCAGAGCTTCAACAGCAGTTGCTGTGGCTACT
CTACGATTTGGGCCACCTCAAACGCTATCCGATGGCCCTGGGCACCCTAG
GCGAGCTGGAGGAGATTCATCGCACGCATCCCAGCATCAGTTGCGAGCAG
TTATATCGCGAGGCTATAGAGTCGGCGAGGACCCACTATCGGAACCATCA
CGTATATCCGTATACCTACCAGGGGAACTACTACAATCGATTGCTCAAAT
ACCGCGACGCCTTTGCCGCATGGGCAAATGCGGCGGACGTTATTCGTTTG
TATACGTATCAGTGTCGTGATGACGAGGAGATCTACAAGGAGCTATTGGA
CATTGCCAACGAGCTCATACCGTACGTGATGAAAACAGAAAGTTCTGGTC
ATTCGGCGAGAAGTATTCTACGAGATTCTGAGGTTTTCGCCAATTTGCTG
CGATTCTACGACGGCATCTGCCAATGGGAGGAGGATAGCTTGACTCCCAT
TCTACACATTGGTTGGGCCAAACCACTGGTGAATAATATCACCAAGTTCG
ATTACGACATTAGGTCCCAGGTGGTCATCAAGTTGCCCGAGGATCTGGAG
GCGGAGCAGGCGAAGGCGGAACTGGCGAGGGCGGAACAGGAAGCAAAGGA
AGCTAAGGAGTCGAAGGAAGCTGCAGGATCAGAGGCAATGGAAGGCAATA
ACAATAGGATGGCCACAAAGGAGGAGGTAAGCATACTCATTACTTCACAT
TATAAATTTTATTTAACACTTCAGTCCAGTTGAAAATAGAAAATATATAA
TTCTTGAAATTCATTTGGAACGAAAAAAAAAAAAAAAAA

RE21276.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-RB 1922 Mnn1-RB 1..1922 1..1922 9595 99.9 Plus
Mnn1-RC 5247 Mnn1-RC 999..2594 231..1826 7980 100 Plus
Mnn1.c 5201 Mnn1.c 999..2594 231..1826 7980 100 Plus
Mnn1-RC 5247 Mnn1-RC 25..255 1..231 1140 99.5 Plus
Mnn1.c 5201 Mnn1.c 25..255 1..231 1140 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7057445..7058347 1020..1922 4500 99.9 Plus
chr2L 23010047 chr2L 7056914..7057380 556..1022 2320 99.8 Plus
chr2L 23010047 chr2L 7056400..7056730 231..561 1655 100 Plus
chr2L 23010047 chr2L 7055359..7055589 1..231 1140 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7058392..7059297 1020..1925 4530 100 Plus
2L 23513712 2L 7057861..7058327 556..1022 2335 100 Plus
2L 23513712 2L 7057347..7057677 231..561 1655 100 Plus
2L 23513712 2L 7056306..7056536 1..231 1140 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7058392..7059297 1020..1925 4530 100 Plus
2L 23513712 2L 7057861..7058327 556..1022 2335 100 Plus
2L 23513712 2L 7057347..7057677 231..561 1655 100 Plus
2L 23513712 2L 7056306..7056536 1..231 1140 99.5 Plus
Blast to na_te.dros performed 2019-03-16 21:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5366..5405 1877..1916 119 77.5 Plus

RE21276.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:03:57 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7055359..7055589 1..231 99 -> Plus
chr2L 7056401..7056727 232..558 100 -> Plus
chr2L 7056917..7057378 559..1020 99 -> Plus
chr2L 7057446..7058347 1021..1922 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:36 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 291..1883 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:07 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 291..1883 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:31:50 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 291..1883 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:54 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 291..1883 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:45 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1593 291..1883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:29:33 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1922 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:07 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1922 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:50 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 6..1927 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:54 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 1..1922 1..1922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:45 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
Mnn1-RB 6..1927 1..1922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:57 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7056306..7056536 1..231 99 -> Plus
2L 7057348..7057674 232..558 100 -> Plus
2L 7057864..7058325 559..1020 100 -> Plus
2L 7058393..7059294 1021..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:57 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7056306..7056536 1..231 99 -> Plus
2L 7057348..7057674 232..558 100 -> Plus
2L 7057864..7058325 559..1020 100 -> Plus
2L 7058393..7059294 1021..1922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:57 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7056306..7056536 1..231 99 -> Plus
2L 7057348..7057674 232..558 100 -> Plus
2L 7057864..7058325 559..1020 100 -> Plus
2L 7058393..7059294 1021..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:50 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7056306..7056536 1..231 99 -> Plus
arm_2L 7057348..7057674 232..558 100 -> Plus
arm_2L 7057864..7058325 559..1020 100 -> Plus
arm_2L 7058393..7059294 1021..1922 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:24 Download gff for RE21276.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7056306..7056536 1..231 99 -> Plus
2L 7057348..7057674 232..558 100 -> Plus
2L 7057864..7058325 559..1020 100 -> Plus
2L 7058393..7059294 1021..1922 100   Plus

RE21276.pep Sequence

Translation from 290 to 1882

> RE21276.pep
MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL
LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV
PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI
RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED
HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC
ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL
GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR
LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE
SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI
TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM
EGNNNRMATKEEVSILITSHYKFYLTLQSS*

RE21276.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20766-PA 763 GF20766-PA 1..510 1..514 2352 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10459-PA 769 GG10459-PA 1..519 1..514 2725 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10098-PA 754 GH10098-PA 1..459 1..468 2126 88.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-PB 530 CG13778-PB 1..530 1..530 2715 100 Plus
Mnn1-PA 763 CG13778-PA 1..514 1..514 2629 99.8 Plus
Mnn1-PC 763 CG13778-PC 1..514 1..514 2629 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14382-PA 743 GI14382-PA 1..460 1..469 2125 88.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14105-PA 787 GL14105-PA 1..518 1..512 2265 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12519-PA 787 GA12519-PA 1..518 1..512 2265 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16311-PA 763 GM16311-PA 1..514 1..514 2750 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23452-PA 554 GD23452-PA 1..510 1..510 2641 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16255-PA 743 GJ16255-PA 1..459 1..468 2141 89.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24291-PA 789 GK24291-PA 3..533 2..514 2201 84.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14373-PA 761 GE14373-PA 1..514 1..514 2734 98.2 Plus

RE21276.hyp Sequence

Translation from 290 to 1882

> RE21276.hyp
MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL
LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV
PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI
RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED
HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC
ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL
GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR
LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE
SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI
TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM
EGNNNRMATKEEVSILITSHYKFYLTLQSS*

RE21276.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Mnn1-PB 530 CG13778-PB 1..530 1..530 2715 100 Plus
Mnn1-PA 763 CG13778-PA 1..514 1..514 2629 99.8 Plus
Mnn1-PC 763 CG13778-PC 1..514 1..514 2629 99.8 Plus