BDGP Sequence Production Resources |
Search the DGRC for RE21276
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 212 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mnn1-RB |
Protein status: | RE21276.pep: gold |
Preliminary Size: | 2442 |
Sequenced Size: | 1939 |
Gene | Date | Evidence |
---|---|---|
CG13778 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13778 | 2002-02-22 | Blastp of sequenced clone |
CG13778 | 2003-01-01 | Sim4 clustering to Release 3 |
Mnn1 | 2008-04-29 | Release 5.5 accounting |
Mnn1 | 2008-08-15 | Release 5.9 accounting |
Mnn1 | 2008-12-18 | 5.12 accounting |
1939 bp (1939 high quality bases) assembled on 2005-08-22
GenBank Submission: AY084134
> RE21276.complete GGCGCGTGCTGGGTGTGGACACACTGGCACGCAGCGAAGTAAACACAACG CAATATTTCGTCGGAATTTCACCTGGTTTTCACCTGGTCTGTCGCGCAAT AAAACCGCCCAATTGGTGCCGAAATTACGGCACAGATAATGCGCGAATCA ATTGGCATACGGCGCGATGAGATAATCGGTCGATTCGGGCGGCAAAAAGC AACTGCGTGTCAAGTGGAAAATCAGTGAACGTGAAGGGGCAATTATTCCA TTAAATCATTTGGCAATCAGAAGAACCCCTGCCTGCAACCATGTCCACGA TTACCAGAAGCGCTAGCGCAAGTCCTATGGCGCTGAACGGCGTCATCGAT GCCAGCCTGTTCCCCCTAAAGTCCACGGCCGATGTTATCAATCTGTTCCG TCGCGCTCTAACCTCTGGAATCGAGCCTGATCTCACCCTGCTCTCCATTG TCGTTGGATACATCGAGCTGTCTTTGACGACGGGAGAGGCTGCTGCGCAG GCCGCTCAAGCCGCCGCGGCCGCAGTCGCAGCAGGTGACATTAGTCAGGC GACGACAGGTGGAAATGACATCATCATGGGCAACAGCGTCCCGTTTCCAG TTGTTACCCACGAACTGATCGCCGGGCTGTATAAGAAGTTCCAGACGATC CTGTCGGTGGTCGAGAAGCCCAAGCCCCACCGCCAAGCCACCCGCGAGGT GATCAAGAAGGTGTCGGATGTGATCTGGAACTCGCTGATCCGCAGCAGCT ACAAGGATCGGGCTCACTTGCAAAACCTCTACAGCTATCTGTCCGGCAAC AAGTTGGACTGCTTCGGCGTTGCTCTGGCTGTGGTGGCGGGTTGCCAGTT GCTTGGCTACAAGGACGTGCGACTGGCCATCTCCGAGGATCATGCCTGGG TGGTATTTGGCCAAAAGCGCGTGGAAACAATCGAAGTGACATGGCACGGC AAAGGAAGCGAGGATAAGCGGGGGCAGGATATTCGTCCCGGGATCGAATC CGGATCCTGGCTCTACTTGGGTGGCCTGGCGGTGGTTTGCGAGCGTGGCA TGGAAGTGGCGGCCATCTGTGCCGCTCTGAATATTTCATTGACCTCGAAC AGTGACTGCGTGGAGGTGGCAGAGCTTCAACAGCAGTTGCTGTGGCTACT CTACGATTTGGGCCACCTCAAACGCTATCCGATGGCCCTGGGCACCCTAG GCGAGCTGGAGGAGATTCATCGCACGCATCCCAGCATCAGTTGCGAGCAG TTATATCGCGAGGCTATAGAGTCGGCGAGGACCCACTATCGGAACCATCA CGTATATCCGTATACCTACCAGGGGAACTACTACAATCGATTGCTCAAAT ACCGCGACGCCTTTGCCGCATGGGCAAATGCGGCGGACGTTATTCGTTTG TATACGTATCAGTGTCGTGATGACGAGGAGATCTACAAGGAGCTATTGGA CATTGCCAACGAGCTCATACCGTACGTGATGAAAACAGAAAGTTCTGGTC ATTCGGCGAGAAGTATTCTACGAGATTCTGAGGTTTTCGCCAATTTGCTG CGATTCTACGACGGCATCTGCCAATGGGAGGAGGATAGCTTGACTCCCAT TCTACACATTGGTTGGGCCAAACCACTGGTGAATAATATCACCAAGTTCG ATTACGACATTAGGTCCCAGGTGGTCATCAAGTTGCCCGAGGATCTGGAG GCGGAGCAGGCGAAGGCGGAACTGGCGAGGGCGGAACAGGAAGCAAAGGA AGCTAAGGAGTCGAAGGAAGCTGCAGGATCAGAGGCAATGGAAGGCAATA ACAATAGGATGGCCACAAAGGAGGAGGTAAGCATACTCATTACTTCACAT TATAAATTTTATTTAACACTTCAGTCCAGTTGAAAATAGAAAATATATAA TTCTTGAAATTCATTTGGAACGAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mnn1-RB | 1922 | Mnn1-RB | 1..1922 | 1..1922 | 9595 | 99.9 | Plus |
Mnn1-RC | 5247 | Mnn1-RC | 999..2594 | 231..1826 | 7980 | 100 | Plus |
Mnn1.c | 5201 | Mnn1.c | 999..2594 | 231..1826 | 7980 | 100 | Plus |
Mnn1-RC | 5247 | Mnn1-RC | 25..255 | 1..231 | 1140 | 99.5 | Plus |
Mnn1.c | 5201 | Mnn1.c | 25..255 | 1..231 | 1140 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7057445..7058347 | 1020..1922 | 4500 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 7056914..7057380 | 556..1022 | 2320 | 99.8 | Plus |
chr2L | 23010047 | chr2L | 7056400..7056730 | 231..561 | 1655 | 100 | Plus |
chr2L | 23010047 | chr2L | 7055359..7055589 | 1..231 | 1140 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7058392..7059297 | 1020..1925 | 4530 | 100 | Plus |
2L | 23513712 | 2L | 7057861..7058327 | 556..1022 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057347..7057677 | 231..561 | 1655 | 100 | Plus |
2L | 23513712 | 2L | 7056306..7056536 | 1..231 | 1140 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7058392..7059297 | 1020..1925 | 4530 | 100 | Plus |
2L | 23513712 | 2L | 7057861..7058327 | 556..1022 | 2335 | 100 | Plus |
2L | 23513712 | 2L | 7057347..7057677 | 231..561 | 1655 | 100 | Plus |
2L | 23513712 | 2L | 7056306..7056536 | 1..231 | 1140 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5366..5405 | 1877..1916 | 119 | 77.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7055359..7055589 | 1..231 | 99 | -> | Plus |
chr2L | 7056401..7056727 | 232..558 | 100 | -> | Plus |
chr2L | 7056917..7057378 | 559..1020 | 99 | -> | Plus |
chr2L | 7057446..7058347 | 1021..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1593 | 291..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1593 | 291..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1593 | 291..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1593 | 291..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1593 | 291..1883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1922 | 1..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1922 | 1..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 6..1927 | 1..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 1..1922 | 1..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mnn1-RB | 6..1927 | 1..1922 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7056306..7056536 | 1..231 | 99 | -> | Plus |
2L | 7057348..7057674 | 232..558 | 100 | -> | Plus |
2L | 7057864..7058325 | 559..1020 | 100 | -> | Plus |
2L | 7058393..7059294 | 1021..1922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7056306..7056536 | 1..231 | 99 | -> | Plus |
2L | 7057348..7057674 | 232..558 | 100 | -> | Plus |
2L | 7057864..7058325 | 559..1020 | 100 | -> | Plus |
2L | 7058393..7059294 | 1021..1922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7056306..7056536 | 1..231 | 99 | -> | Plus |
2L | 7057348..7057674 | 232..558 | 100 | -> | Plus |
2L | 7057864..7058325 | 559..1020 | 100 | -> | Plus |
2L | 7058393..7059294 | 1021..1922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7056306..7056536 | 1..231 | 99 | -> | Plus |
arm_2L | 7057348..7057674 | 232..558 | 100 | -> | Plus |
arm_2L | 7057864..7058325 | 559..1020 | 100 | -> | Plus |
arm_2L | 7058393..7059294 | 1021..1922 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7056306..7056536 | 1..231 | 99 | -> | Plus |
2L | 7057348..7057674 | 232..558 | 100 | -> | Plus |
2L | 7057864..7058325 | 559..1020 | 100 | -> | Plus |
2L | 7058393..7059294 | 1021..1922 | 100 | Plus |
Translation from 290 to 1882
> RE21276.pep MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM EGNNNRMATKEEVSILITSHYKFYLTLQSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20766-PA | 763 | GF20766-PA | 1..510 | 1..514 | 2352 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10459-PA | 769 | GG10459-PA | 1..519 | 1..514 | 2725 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10098-PA | 754 | GH10098-PA | 1..459 | 1..468 | 2126 | 88.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mnn1-PB | 530 | CG13778-PB | 1..530 | 1..530 | 2715 | 100 | Plus |
Mnn1-PA | 763 | CG13778-PA | 1..514 | 1..514 | 2629 | 99.8 | Plus |
Mnn1-PC | 763 | CG13778-PC | 1..514 | 1..514 | 2629 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14382-PA | 743 | GI14382-PA | 1..460 | 1..469 | 2125 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14105-PA | 787 | GL14105-PA | 1..518 | 1..512 | 2265 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12519-PA | 787 | GA12519-PA | 1..518 | 1..512 | 2265 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16311-PA | 763 | GM16311-PA | 1..514 | 1..514 | 2750 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23452-PA | 554 | GD23452-PA | 1..510 | 1..510 | 2641 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16255-PA | 743 | GJ16255-PA | 1..459 | 1..468 | 2141 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24291-PA | 789 | GK24291-PA | 3..533 | 2..514 | 2201 | 84.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14373-PA | 761 | GE14373-PA | 1..514 | 1..514 | 2734 | 98.2 | Plus |
Translation from 290 to 1882
> RE21276.hyp MSTITRSASASPMALNGVIDASLFPLKSTADVINLFRRALTSGIEPDLTL LSIVVGYIELSLTTGEAAAQAAQAAAAAVAAGDISQATTGGNDIIMGNSV PFPVVTHELIAGLYKKFQTILSVVEKPKPHRQATREVIKKVSDVIWNSLI RSSYKDRAHLQNLYSYLSGNKLDCFGVALAVVAGCQLLGYKDVRLAISED HAWVVFGQKRVETIEVTWHGKGSEDKRGQDIRPGIESGSWLYLGGLAVVC ERGMEVAAICAALNISLTSNSDCVEVAELQQQLLWLLYDLGHLKRYPMAL GTLGELEEIHRTHPSISCEQLYREAIESARTHYRNHHVYPYTYQGNYYNR LLKYRDAFAAWANAADVIRLYTYQCRDDEEIYKELLDIANELIPYVMKTE SSGHSARSILRDSEVFANLLRFYDGICQWEEDSLTPILHIGWAKPLVNNI TKFDYDIRSQVVIKLPEDLEAEQAKAELARAEQEAKEAKESKEAAGSEAM EGNNNRMATKEEVSILITSHYKFYLTLQSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mnn1-PB | 530 | CG13778-PB | 1..530 | 1..530 | 2715 | 100 | Plus |
Mnn1-PA | 763 | CG13778-PA | 1..514 | 1..514 | 2629 | 99.8 | Plus |
Mnn1-PC | 763 | CG13778-PC | 1..514 | 1..514 | 2629 | 99.8 | Plus |