Clone RE21492 Report

Search the DGRC for RE21492

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:214
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG33966-RA
Protein status:RE21492.pep: gold
Sequenced Size:1171

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1211 2002-01-01 Sim4 clustering to Release 2
CG1211 2003-01-01 Sim4 clustering to Release 3
CG33966 2008-04-29 Release 5.5 accounting
CG33966 2008-04-29 Picked prior to 5.5
CG33966 2008-08-15 Release 5.9 accounting
CG33966 2008-12-18 5.12 accounting

Clone Sequence Records

RE21492.complete Sequence

1171 bp assembled on 2007-08-16

GenBank Submission: BT031010

> RE21492.complete
ACTCGTTCATCGACCGCCAAGAAGAGAGGAACAAGATGCCGGCCATCCGA
CCACTGAGTCCCGAGCTCCAAAAGACTGCGATTGAGAACCTGAATGAGGT
GCCTAATAAGTTGGATGACGACATCGCCGCCCTGAGGGATTGGATTAAGC
AGCAACCCCATTTGAAAGCCCGCACAGATGACCAGTTCTTGGTGAACTTC
CTGCGCGGCTGCAAGTTCAGTTTGGAAAGGACCAAGTCGAAGATCGACAG
GTTCTACACACTACGCACCAAGTACCCAGAGTTTTATTTGGGTCATAATG
TCGATGTGGACAAAGCACTGGAGATATTCCGATTGGGCACCATAGTTATT
CTGCCACGTCCTCTAAACGATAATGGCCCGCGATTGGCTCTGCTGCGCAT
GGCCTGCTATGATCCCAGCAAATACACCCTCCAGGAGGTGAATCGAGCTG
CTGGTCTCATGCAGCAGATTATGCTCGACGAGGACGATGTGGCCATTGTG
AATGGTTTAATATCCATTCTGGATCTGTCCAATGTCACCACCGGGCACTT
CCTGCAGATGTCACCGTCCTTCGCCAAGAAGATGACCGTTTTTCAGGAGG
AGGCCCTGCCCCTGCGACCGCAGGGAATCCATTTCATTAATACGCCCAAC
GGATTTGACACCATCTTCAATATGATCAAGCCCATGATGTCTAAGAAGCA
GCAAGGACGCCTCTACGTTCATGGAAGCAAATGGGAGGCACTCTACAATC
AGATTCCCAAACAGTATTTGCCAGTGGAATACGGAGGGGAGAACGGATCG
ATTCCGGAGCTGCTGCAGCAGTGGGAGCAGCGTATTCTAGCCTACCGGAA
TTACTGGGAGGAGGAGAAGAACTACGGAACCGATGAAAGCCTCCGAGTGG
GTCAGCCTGTTGACTTCGAGAGTCTTTTTGGTCTGCAGGGCTCCTTCCGG
CAATTGAATGTGGACTGAAGTGTCAAGCCCTCCTAACCCTGCTAAATTGC
TTAAAATAGTCTTAGCTGCAGCTCTTATCTAAGGTAACAAAGGTAATGGT
TGTACACCAGTCGATTTGTGATAAGCATAGCGCTAAGAGCATAAAAAACA
AGCCGAAAACTTAGCACAGCATGTAATAAAGATAGTTAATTTTATATTCA
ATTACAAAAAAAAAAAAAAAA

RE21492.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33966-RA 1254 CG33966-RA 29..1184 1..1156 5780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1234498..1234943 711..1155 2105 98.7 Plus
chr3L 24539361 chr3L 1234061..1234434 337..710 1840 99.5 Plus
chr3L 24539361 chr3L 1233660..1233996 1..337 1565 97.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1234976..1235421 711..1156 2230 100 Plus
3L 28110227 3L 1234539..1234912 337..710 1870 100 Plus
3L 28110227 3L 1234138..1234474 1..337 1685 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1234976..1235421 711..1156 2230 100 Plus
3L 28103327 3L 1234539..1234912 337..710 1870 100 Plus
3L 28103327 3L 1234138..1234474 1..337 1685 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:33:11 has no hits.

RE21492.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:19 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1234498..1234943 711..1155 98   Plus
chr3L 1233660..1233996 1..337 97 -> Plus
chr3L 1234062..1234434 338..710 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:42 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..933 36..968 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:00:27 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..933 36..968 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:55:36 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..933 36..968 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:59:56 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..933 36..968 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:04 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..933 36..968 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:25:38 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..968 1..968 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:00:27 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..1155 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:36 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 9..1163 1..1155 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:59:56 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 1..968 1..968 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:04 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
CG33966-RA 9..1163 1..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:19 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1234138..1234474 1..337 100 -> Plus
3L 1234540..1234912 338..710 100 -> Plus
3L 1234976..1235420 711..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:19 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1234138..1234474 1..337 100 -> Plus
3L 1234540..1234912 338..710 100 -> Plus
3L 1234976..1235420 711..1155 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:19 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1234138..1234474 1..337 100 -> Plus
3L 1234540..1234912 338..710 100 -> Plus
3L 1234976..1235420 711..1155 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:36 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1234138..1234474 1..337 100 -> Plus
arm_3L 1234540..1234912 338..710 100 -> Plus
arm_3L 1234976..1235420 711..1155 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:35:50 Download gff for RE21492.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1234138..1234474 1..337 100 -> Plus
3L 1234540..1234912 338..710 100 -> Plus
3L 1234976..1235420 711..1155 100   Plus

RE21492.hyp Sequence

Translation from 2 to 967

> RE21492.hyp
SFIDRQEERNKMPAIRPLSPELQKTAIENLNEVPNKLDDDIAALRDWIKQ
QPHLKARTDDQFLVNFLRGCKFSLERTKSKIDRFYTLRTKYPEFYLGHNV
DVDKALEIFRLGTIVILPRPLNDNGPRLALLRMACYDPSKYTLQEVNRAA
GLMQQIMLDEDDVAIVNGLISILDLSNVTTGHFLQMSPSFAKKMTVFQEE
ALPLRPQGIHFINTPNGFDTIFNMIKPMMSKKQQGRLYVHGSKWEALYNQ
IPKQYLPVEYGGENGSIPELLQQWEQRILAYRNYWEEEKNYGTDESLRVG
QPVDFESLFGLQGSFRQLNVD*

RE21492.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33966-PA 310 CG33966-PA 1..310 12..321 1629 100 Plus
CG33514-PA 311 CG33514-PA 3..311 13..321 916 55.3 Plus
CG12926-PA 313 CG12926-PA 8..313 14..321 766 46.1 Plus
CG30339-PA 308 CG30339-PA 1..308 12..321 672 42.6 Plus
CG33965-PA 317 CG33965-PA 8..317 14..321 671 43.4 Plus

RE21492.pep Sequence

Translation from 2 to 967

> RE21492.pep
SFIDRQEERNKMPAIRPLSPELQKTAIENLNEVPNKLDDDIAALRDWIKQ
QPHLKARTDDQFLVNFLRGCKFSLERTKSKIDRFYTLRTKYPEFYLGHNV
DVDKALEIFRLGTIVILPRPLNDNGPRLALLRMACYDPSKYTLQEVNRAA
GLMQQIMLDEDDVAIVNGLISILDLSNVTTGHFLQMSPSFAKKMTVFQEE
ALPLRPQGIHFINTPNGFDTIFNMIKPMMSKKQQGRLYVHGSKWEALYNQ
IPKQYLPVEYGGENGSIPELLQQWEQRILAYRNYWEEEKNYGTDESLRVG
QPVDFESLFGLQGSFRQLNVD*

RE21492.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24441-PA 310 GF24441-PA 1..310 12..321 1530 90.6 Plus
Dana\GF25066-PA 311 GF25066-PA 3..311 13..321 961 57.3 Plus
Dana\GF12489-PA 311 GF12489-PA 6..311 14..321 783 46.4 Plus
Dana\GF24440-PA 318 GF24440-PA 9..318 14..321 705 43.6 Plus
Dana\GF12490-PA 308 GF12490-PA 1..308 12..321 698 43.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14766-PA 324 GG14766-PA 4..324 1..321 1638 94.1 Plus
Dere\GG15223-PA 311 GG15223-PA 3..311 13..321 951 56 Plus
Dere\GG25270-PA 313 GG25270-PA 8..313 14..321 790 45.8 Plus
Dere\GG14765-PA 317 GG14765-PA 8..317 14..321 703 44.1 Plus
Dere\GG25272-PA 308 GG25272-PA 1..308 12..321 691 43.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15439-PA 324 GH15439-PA 4..324 1..321 1269 70.4 Plus
Dgri\GH15199-PA 308 GH15199-PA 3..308 13..321 902 54.4 Plus
Dgri\GH14848-PA 311 GH14848-PA 1..311 12..321 884 52.4 Plus
Dgri\GH22856-PA 316 GH22856-PA 11..316 14..321 767 45.5 Plus
Dgri\GH13581-PA 314 GH13581-PA 6..314 15..321 711 44.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33966-PA 310 CG33966-PA 1..310 12..321 1629 100 Plus
CG33514-PA 311 CG33514-PA 3..311 13..321 916 55.3 Plus
CG12926-PA 313 CG12926-PA 8..313 14..321 766 46.1 Plus
CG30339-PA 308 CG30339-PA 1..308 12..321 672 42.6 Plus
CG33965-PA 317 CG33965-PA 8..317 14..321 671 43.4 Plus
CG31636-PB 313 CG31636-PB 1..313 12..321 649 40.4 Plus
CG31636-PA 313 CG31636-PA 1..313 12..321 649 40.4 Plus
CG2663-PC 308 CG2663-PC 7..308 19..321 505 35.1 Plus
CG2663-PA 308 CG2663-PA 7..308 19..321 505 35.1 Plus
CG10301-PB 306 CG10301-PB 3..306 16..321 492 35 Plus
CG1902-PC 312 CG1902-PC 1..312 12..321 491 34.8 Plus
CG1902-PA 312 CG1902-PA 1..312 12..321 491 34.8 Plus
CG10300-PA 311 CG10300-PA 5..311 15..321 485 35.3 Plus
CG11550-PA 298 CG11550-PA 20..298 40..321 312 28.2 Plus
CG10657-PA 334 CG10657-PA 26..334 13..321 307 29.8 Plus
CG3091-PC 303 CG3091-PC 24..288 39..289 305 27.6 Plus
CG3091-PA 303 CG3091-PA 24..288 39..289 305 27.6 Plus
CG5958-PA 294 CG5958-PA 18..290 18..292 291 27.5 Plus
pinta-PB 273 CG13848-PB 19..268 34..291 281 26.7 Plus
pinta-PA 273 CG13848-PA 19..268 34..291 281 26.7 Plus
CG10026-PD 290 CG10026-PD 16..255 20..262 269 28.5 Plus
CG10026-PC 290 CG10026-PC 16..255 20..262 269 28.5 Plus
CG10026-PA 290 CG10026-PA 16..255 20..262 269 28.5 Plus
CG10026-PB 299 CG10026-PB 25..264 20..262 269 28.5 Plus
CG10237-PD 301 CG10237-PD 30..297 23..292 269 25 Plus
CG10237-PA 301 CG10237-PA 30..297 23..292 269 25 Plus
CG10237-PE 306 CG10237-PE 35..302 23..292 269 25 Plus
CG10237-PC 306 CG10237-PC 35..302 23..292 269 25 Plus
CG10237-PB 324 CG10237-PB 53..320 23..292 269 25 Plus
Cralbp-PA 324 CG10546-PA 11..324 18..321 258 24.5 Plus
CG3823-PA 295 CG3823-PA 17..295 41..321 253 23.4 Plus
CG5973-PF 311 CG5973-PF 37..272 24..262 252 27.1 Plus
CG5973-PE 311 CG5973-PE 37..272 24..262 252 27.1 Plus
CG5973-PG 311 CG5973-PG 37..272 24..262 252 27.1 Plus
CG5973-PD 311 CG5973-PD 37..272 24..262 252 27.1 Plus
CG5973-PC 311 CG5973-PC 37..272 24..262 252 27.1 Plus
CG5973-PB 311 CG5973-PB 37..272 24..262 252 27.1 Plus
CG5973-PA 311 CG5973-PA 37..272 24..262 252 27.1 Plus
CG3191-PC 309 CG3191-PC 15..285 19..284 233 26 Plus
CG3191-PA 309 CG3191-PA 15..285 19..284 233 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16717-PA 308 GI16717-PA 3..308 13..321 919 55 Plus
Dmoj\GI13701-PA 312 GI13701-PA 3..312 13..321 840 52.3 Plus
Dmoj\GI21233-PA 313 GI21233-PA 9..313 15..321 763 45 Plus
Dmoj\GI21234-PA 308 GI21234-PA 1..308 12..321 728 44.5 Plus
Dmoj\GI13038-PA 318 GI13038-PA 6..318 11..321 708 42 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16163-PA 311 GL16163-PA 3..311 13..321 1461 84.1 Plus
Dper\GL17330-PA 311 GL17330-PA 6..311 14..321 794 45.5 Plus
Dper\GL26205-PA 313 GL26205-PA 1..313 12..321 693 41.7 Plus
Dper\GL16161-PA 313 GL16161-PA 1..313 12..321 685 42.4 Plus
Dper\GL17331-PA 308 GL17331-PA 1..308 12..321 672 43.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28411-PA 311 GA28411-PA 3..311 13..321 1461 84.1 Plus
Dpse\GA28527-PA 311 GA28527-PA 3..311 13..321 944 56.3 Plus
Dpse\GA11913-PA 311 GA11913-PA 6..311 14..321 788 45.1 Plus
Dpse\GA16352-PA 313 GA16352-PA 1..313 12..321 693 41.7 Plus
Dpse\GA28410-PA 313 GA28410-PA 1..313 12..321 685 42.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14386-PA 290 GM14386-PA 1..290 12..321 1492 90.6 Plus
Dsec\GM14655-PA 311 GM14655-PA 3..311 13..321 928 55 Plus
Dsec\GM20588-PA 313 GM20588-PA 8..313 14..321 789 45.8 Plus
Dsec\GM20589-PA 308 GM20589-PA 1..308 12..321 691 42.6 Plus
Dsec\GM14385-PA 317 GM14385-PA 8..317 14..321 682 42.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13840-PA 311 GD13840-PA 3..311 13..321 938 55.7 Plus
Dsim\GD13595-PA 169 GD13595-PA 1..169 153..321 894 97.6 Plus
Dsim\GD10061-PA 308 GD10061-PA 1..308 12..321 683 42.9 Plus
Dsim\GD22558-PA 313 GD22558-PA 1..313 12..321 657 40.1 Plus
Dsim\GD18363-PA 101 GD18363-PA 1..101 12..112 524 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12135-PA 310 GJ12135-PA 1..310 12..321 1307 74.5 Plus
Dvir\GJ12461-PA 308 GJ12461-PA 3..308 13..321 922 55.3 Plus
Dvir\GJ14041-PA 311 GJ14041-PA 1..311 12..321 846 52.4 Plus
Dvir\GJ20838-PA 316 GJ20838-PA 5..316 8..321 732 44.6 Plus
Dvir\GJ20839-PA 312 GJ20839-PA 8..312 15..321 713 44 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21135-PA 310 GK21135-PA 1..310 12..321 1361 77.7 Plus
Dwil\GK11682-PA 311 GK11682-PA 1..311 12..321 990 58.8 Plus
Dwil\GK15622-PA 313 GK15622-PA 8..313 14..321 813 47.1 Plus
Dwil\GK21130-PA 318 GK21130-PA 8..318 15..321 721 44.6 Plus
Dwil\GK18277-PA 317 GK18277-PA 8..317 15..321 696 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21129-PA 310 GE21129-PA 1..310 12..321 1589 94.2 Plus
Dyak\GE21443-PA 311 GE21443-PA 3..311 13..321 945 55.3 Plus
Dyak\GE22148-PA 313 GE22148-PA 8..313 14..321 791 45.8 Plus
Dyak\GE21128-PA 317 GE21128-PA 8..317 14..321 711 44.4 Plus
Dyak\GE22159-PA 308 GE22159-PA 1..308 12..321 697 43.2 Plus