BDGP Sequence Production Resources |
Search the DGRC for RE21578
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 215 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | gus-RI |
Protein status: | RE21578.pep: gold |
Sequenced Size: | 2050 |
Gene | Date | Evidence |
---|---|---|
gus-RD | 2009-06-22 | Replacement based on scoring |
CG2944 | 2011-03-01 | Transcript Validation |
2050 bp assembled on 2009-09-30
GenBank Submission: BT099916.1
> RE21578.complete GTTGGCTCGCTTTTGTAATACCGTTTGCAAGCCTACTTATATTGTGATCG GACAACCCGTGTGTTATCTTAAATAACAAATTTTTTATTTCGTTGAAAAT AGTTGTTTGTTTCGTTTATATTTTAAATACTTTCTACATATTTCTGTGCA TAATGAACATAACGATTTCACAACTAAGCAAGAAAAGAAATTAACTTCAC TCGGTGACGCCATTTTGTCCAATTTTTATATACTGCTTTATAAATGGAAT TTGGTAAAAAAAGGTAATGTAAAGTACATGGAATGTAGAAGTGTCTTCAA CGCGAATGCACATATGCATATACATGTCTATGTATAAGGGTGGTCGGACA CCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTAT ATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGT TTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCC AGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAA AACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAA GAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTT GATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTC CGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACAT TTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTC GGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCA AAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTAC ATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGC TGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGG AGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAG ATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTCATT GTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAA ACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGC GTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGC CGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACAT TCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTATAAAA ACCGTAGATAATAGTTTTGTTAAGTAGATGGAGGAGCAATTTCAATTTTT GCTGCATGTGATGAAAGCAGCAAATACTAATTGTGTTAGATTATAATAGT ATTAGATCAATGTTTGTCTGTCCTCCAACAGGAAAATCATAGGTATACAA TTCGTAATAATACTTTACTTAAGCTATAAAGATTGATTGTATATTAAGAA GCATTCAAATAATAGTATGTACACGGAATGACATCTCATCTTGCAATAAA TTGGAGAATCGAGTTTCTTCATGTAACATTATTTAAAAACTATACTCACT TCGTGTTATATAAAAAGCATATTTGTATAAATATTAAAACTTAAAAAGCG CAGTTTTAATTAAATGTATGTATGTATAAATAATTCTAACAATATTTAAC ATGAAAAGCTCTGAAAGTAATTGGTTTACTTTTTATAAATATATTTCGGG AGAAAAACTTGAAATATTGAATATATTTATTAAAATTTGTAAGCTGCTTT CAAGTTTTAGGCAAAAGGCCTGAGGACATAGAAAATTCTGGAAGTAGCGC AAATCACAATTACAATATTGCTCTATAGTTGCTGAGTAGTATTCAATAAA ATGATATTAAATTGTTACATAAAAGTATGTAACGGCCTTAACATGGAAGT TTCAATATATGTCTTCTTTTAAGAGTTCATAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus.g | 2126 | gus.g | 78..2116 | 1..2039 | 10180 | 99.9 | Plus |
gus.j | 2058 | gus.j | 6..2048 | 1..2039 | 10115 | 99.7 | Plus |
gus.i | 2057 | gus.i | 370..2057 | 329..2016 | 8440 | 100 | Plus |
gus.i | 2057 | gus.i | 6..340 | 1..335 | 1675 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1008241..1009130 | 1221..332 | 4420 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 1004479..1005291 | 2034..1222 | 4050 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 1009456..1009722 | 267..1 | 1335 | 100 | Minus |
chr2R | 21145070 | chr2R | 1009247..1009322 | 335..260 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 5120763..5121652 | 1221..332 | 4450 | 100 | Minus |
2R | 25286936 | 2R | 5116985..5117802 | 2039..1222 | 4075 | 99.9 | Minus |
2R | 25286936 | 2R | 5121979..5122245 | 267..1 | 1335 | 100 | Minus |
2R | 25286936 | 2R | 5121769..5121844 | 335..260 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 5121962..5122851 | 1221..332 | 4450 | 100 | Minus |
2R | 25260384 | 2R | 5118184..5119001 | 2039..1222 | 4075 | 99.8 | Minus |
2R | 25260384 | 2R | 5123178..5123444 | 267..1 | 1335 | 100 | Minus |
2R | 25260384 | 2R | 5122968..5123043 | 335..260 | 380 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 278..444 | 1494..1656 | 138 | 59.2 | Plus |
invader3 | 5484 | invader3 INVADER3 5484bp | 5052..5148 | 1677..1770 | 135 | 64.3 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 7526..7669 | 1494..1633 | 131 | 61 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1004479..1005291 | 1222..2034 | 99 | <- | Minus |
chr2R | 1008241..1009130 | 332..1221 | 99 | <- | Minus |
chr2R | 1009251..1009318 | 264..331 | 100 | <- | Minus |
chr2R | 1009460..1009722 | 1..263 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RE | 1..1056 | 306..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RE | 1..1056 | 306..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RK | 1..840 | 522..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RK | 1..840 | 522..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RE | 6..1819 | 1..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RE | 6..1819 | 1..1814 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RI | 3..2040 | 1..2034 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
gus-RI | 3..2040 | 1..2034 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5116990..5117802 | 1222..2034 | 100 | <- | Minus |
2R | 5120763..5121652 | 332..1221 | 100 | <- | Minus |
2R | 5121773..5121840 | 264..331 | 100 | <- | Minus |
2R | 5121983..5122245 | 1..263 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5116990..5117802 | 1222..2034 | 100 | <- | Minus |
2R | 5120763..5121652 | 332..1221 | 100 | <- | Minus |
2R | 5121773..5121840 | 264..331 | 100 | <- | Minus |
2R | 5121983..5122245 | 1..263 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5116990..5117802 | 1222..2034 | 100 | <- | Minus |
2R | 5120763..5121652 | 332..1221 | 100 | <- | Minus |
2R | 5121773..5121840 | 264..331 | 100 | <- | Minus |
2R | 5121983..5122245 | 1..263 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1004495..1005307 | 1222..2034 | 100 | <- | Minus |
arm_2R | 1008268..1009157 | 332..1221 | 100 | <- | Minus |
arm_2R | 1009278..1009345 | 264..331 | 100 | <- | Minus |
arm_2R | 1009488..1009750 | 1..263 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5118189..5119001 | 1222..2034 | 100 | <- | Minus |
2R | 5121962..5122851 | 332..1221 | 100 | <- | Minus |
2R | 5122972..5123039 | 264..331 | 100 | <- | Minus |
2R | 5123182..5123444 | 1..263 | 100 | Minus |
Translation from 305 to 1360
> RE21578.pep MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR R*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12960-PA | 255 | GF12960-PA | 81..250 | 128..302 | 388 | 45.7 | Plus |
Dana\GF15713-PA | 304 | GF15713-PA | 74..279 | 129..345 | 230 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23140-PA | 349 | GG23140-PA | 8..349 | 10..351 | 1816 | 99.1 | Plus |
Dere\GG22511-PA | 255 | GG22511-PA | 81..250 | 128..302 | 387 | 45.7 | Plus |
Dere\GG25044-PA | 301 | GG25044-PA | 56..271 | 119..345 | 241 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13013-PA | 349 | GH13013-PA | 8..349 | 10..351 | 1727 | 92.4 | Plus |
Dgri\GH21169-PA | 252 | GH21169-PA | 78..247 | 128..302 | 396 | 46.9 | Plus |
Dgri\GH11484-PA | 283 | GH11484-PA | 36..256 | 114..345 | 230 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus-PM | 279 | CG2944-PM | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PL | 279 | CG2944-PL | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PK | 279 | CG2944-PK | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PJ | 279 | CG2944-PJ | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PI | 279 | CG2944-PI | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PH | 279 | CG2944-PH | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PG | 279 | CG2944-PG | 1..279 | 73..351 | 1486 | 100 | Plus |
Fsn-PA | 255 | CG4643-PA | 81..250 | 128..302 | 394 | 45.7 | Plus |
Fsn-PB | 255 | CG4643-PB | 81..250 | 128..302 | 394 | 45.7 | Plus |
SP555-PD | 293 | CG14041-PD | 19..271 | 58..345 | 238 | 28.2 | Plus |
SP555-PB | 293 | CG14041-PB | 19..271 | 58..345 | 238 | 28.2 | Plus |
SP555-PC | 301 | CG14041-PC | 19..271 | 58..345 | 238 | 28.2 | Plus |
SP555-PA | 301 | CG14041-PA | 19..271 | 58..345 | 238 | 28.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18267-PA | 349 | GI18267-PA | 8..349 | 10..351 | 1731 | 92.7 | Plus |
Dmoj\GI18764-PA | 252 | GI18764-PA | 78..247 | 128..302 | 396 | 46.3 | Plus |
Dmoj\GI16979-PA | 316 | GI16979-PA | 85..290 | 129..345 | 209 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15433-PA | 349 | GL15433-PA | 8..349 | 10..351 | 1779 | 96.2 | Plus |
Dper\GL10506-PA | 255 | GL10506-PA | 81..250 | 128..302 | 393 | 46.9 | Plus |
Dper\GL26545-PA | 292 | GL26545-PA | 51..270 | 121..345 | 228 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23998-PA | 349 | GA23998-PA | 8..349 | 10..351 | 1779 | 96.2 | Plus |
Dpse\GA18323-PA | 255 | GA18323-PA | 81..250 | 128..302 | 393 | 46.9 | Plus |
Dpse\GA12721-PA | 292 | GA12721-PA | 51..270 | 121..345 | 228 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26734-PA | 349 | GM26734-PA | 8..349 | 10..351 | 1827 | 100 | Plus |
Dsec\GM20297-PA | 255 | GM20297-PA | 62..250 | 110..302 | 390 | 43.3 | Plus |
Dsec\GM18519-PA | 301 | GM18519-PA | 56..271 | 119..345 | 239 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16681-PA | 349 | GD16681-PA | 8..349 | 10..351 | 1827 | 100 | Plus |
Dsim\GD25778-PA | 245 | GD25778-PA | 81..240 | 128..302 | 332 | 41.7 | Plus |
Dsim\GD12021-PA | 301 | GD12021-PA | 56..271 | 119..345 | 240 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21895-PA | 349 | GJ21895-PA | 8..349 | 10..351 | 1731 | 92.4 | Plus |
Dvir\GJ21788-PA | 252 | GJ21788-PA | 78..247 | 128..302 | 393 | 46.3 | Plus |
Dvir\GJ17226-PA | 299 | GJ17226-PA | 53..272 | 115..345 | 226 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14868-PA | 349 | GK14868-PA | 8..349 | 10..351 | 1757 | 94.7 | Plus |
Dwil\GK22006-PA | 255 | GK22006-PA | 81..250 | 128..302 | 390 | 46.3 | Plus |
Dwil\GK24858-PA | 301 | GK24858-PA | 64..276 | 119..345 | 219 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\gus-PA | 349 | GE11348-PA | 8..349 | 10..351 | 1812 | 98.8 | Plus |
Dyak\GE13381-PA | 255 | GE13381-PA | 81..250 | 128..302 | 381 | 45.1 | Plus |
Dyak\GE11313-PA | 303 | GE11313-PA | 58..273 | 119..345 | 236 | 28.3 | Plus |
Translation from 305 to 1360
> RE21578.hyp MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR R*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gus-PM | 279 | CG2944-PM | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PL | 279 | CG2944-PL | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PK | 279 | CG2944-PK | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PJ | 279 | CG2944-PJ | 1..279 | 73..351 | 1486 | 100 | Plus |
gus-PI | 279 | CG2944-PI | 1..279 | 73..351 | 1486 | 100 | Plus |