Clone RE21578 Report

Search the DGRC for RE21578

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:215
Well:78
Vector:pFlc-1
Associated Gene/Transcriptgus-RI
Protein status:RE21578.pep: gold
Sequenced Size:2050

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
gus-RD 2009-06-22 Replacement based on scoring
CG2944 2011-03-01 Transcript Validation

Clone Sequence Records

RE21578.complete Sequence

2050 bp assembled on 2009-09-30

GenBank Submission: BT099916.1

> RE21578.complete
GTTGGCTCGCTTTTGTAATACCGTTTGCAAGCCTACTTATATTGTGATCG
GACAACCCGTGTGTTATCTTAAATAACAAATTTTTTATTTCGTTGAAAAT
AGTTGTTTGTTTCGTTTATATTTTAAATACTTTCTACATATTTCTGTGCA
TAATGAACATAACGATTTCACAACTAAGCAAGAAAAGAAATTAACTTCAC
TCGGTGACGCCATTTTGTCCAATTTTTATATACTGCTTTATAAATGGAAT
TTGGTAAAAAAAGGTAATGTAAAGTACATGGAATGTAGAAGTGTCTTCAA
CGCGAATGCACATATGCATATACATGTCTATGTATAAGGGTGGTCGGACA
CCTTCTATTAGGTCCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTAT
ATCCACACTATCCCCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGT
TTGAACGTCTTCGACTATCCTACAAAATTGCAATCGACCAAAGAAGATCC
AGAAGCTGCCGTGGCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAA
AACAGTTAGTCGCAATGATTCACAGTCTACATTTAAACCAATAATACCAA
GAGAGTTGCAAGCTGATTTCGTTAAACCAGCGCGAATCGATATATTACTT
GATATGCCGCCAGCATCTCGAGATCTTCAATTGAAGCATTCATGGAACTC
CGAAGATCGGTCTCTTAACATTTTTGTAAAAGAGGACGACAAGTTGACAT
TTCATAGGCACCCAGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTC
GGACTTACAAAGGGATTGCATATTTGGGAAATTTATTGGCCAACAAGGCA
AAGAGGAACCCACGCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTAC
ATTCAGTTGGCTACCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGC
TGGGACTTAGGAAGAAATAAATTATACCATGACTCAAAAAACTGCGCTGG
AGTGACATATCCAGCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAG
ATAAGTTCTTAGTAGCGTTAGATATGGACGAAGGAACACTAAGCTTCATT
GTTGATCAGCAGTACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAA
ACTATATCCAATTGTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGC
GTTACATTGGTGGATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGC
CGAAGAACAATTCGTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACAT
TCAACAGCTTCAACTTCCTTTATCAATGAAAACATATTTATTGTATAAAA
ACCGTAGATAATAGTTTTGTTAAGTAGATGGAGGAGCAATTTCAATTTTT
GCTGCATGTGATGAAAGCAGCAAATACTAATTGTGTTAGATTATAATAGT
ATTAGATCAATGTTTGTCTGTCCTCCAACAGGAAAATCATAGGTATACAA
TTCGTAATAATACTTTACTTAAGCTATAAAGATTGATTGTATATTAAGAA
GCATTCAAATAATAGTATGTACACGGAATGACATCTCATCTTGCAATAAA
TTGGAGAATCGAGTTTCTTCATGTAACATTATTTAAAAACTATACTCACT
TCGTGTTATATAAAAAGCATATTTGTATAAATATTAAAACTTAAAAAGCG
CAGTTTTAATTAAATGTATGTATGTATAAATAATTCTAACAATATTTAAC
ATGAAAAGCTCTGAAAGTAATTGGTTTACTTTTTATAAATATATTTCGGG
AGAAAAACTTGAAATATTGAATATATTTATTAAAATTTGTAAGCTGCTTT
CAAGTTTTAGGCAAAAGGCCTGAGGACATAGAAAATTCTGGAAGTAGCGC
AAATCACAATTACAATATTGCTCTATAGTTGCTGAGTAGTATTCAATAAA
ATGATATTAAATTGTTACATAAAAGTATGTAACGGCCTTAACATGGAAGT
TTCAATATATGTCTTCTTTTAAGAGTTCATAAACAAAAAAAAAAAAAAAA

RE21578.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
gus.g 2126 gus.g 78..2116 1..2039 10180 99.9 Plus
gus.j 2058 gus.j 6..2048 1..2039 10115 99.7 Plus
gus.i 2057 gus.i 370..2057 329..2016 8440 100 Plus
gus.i 2057 gus.i 6..340 1..335 1675 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1008241..1009130 1221..332 4420 99.8 Minus
chr2R 21145070 chr2R 1004479..1005291 2034..1222 4050 99.9 Minus
chr2R 21145070 chr2R 1009456..1009722 267..1 1335 100 Minus
chr2R 21145070 chr2R 1009247..1009322 335..260 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5120763..5121652 1221..332 4450 100 Minus
2R 25286936 2R 5116985..5117802 2039..1222 4075 99.9 Minus
2R 25286936 2R 5121979..5122245 267..1 1335 100 Minus
2R 25286936 2R 5121769..5121844 335..260 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5121962..5122851 1221..332 4450 100 Minus
2R 25260384 2R 5118184..5119001 2039..1222 4075 99.8 Minus
2R 25260384 2R 5123178..5123444 267..1 1335 100 Minus
2R 25260384 2R 5122968..5123043 335..260 380 100 Minus
Blast to na_te.dros performed 2019-03-16 20:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 278..444 1494..1656 138 59.2 Plus
invader3 5484 invader3 INVADER3 5484bp 5052..5148 1677..1770 135 64.3 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 7526..7669 1494..1633 131 61 Plus

RE21578.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:47 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1004479..1005291 1222..2034 99 <- Minus
chr2R 1008241..1009130 332..1221 99 <- Minus
chr2R 1009251..1009318 264..331 100 <- Minus
chr2R 1009460..1009722 1..263 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:56:17 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RE 1..1056 306..1361 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:36:08 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RE 1..1056 306..1361 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:36 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RK 1..840 522..1361 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:00 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RK 1..840 522..1361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-30 10:16:43 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RE 6..1819 1..1814 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:36:08 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RE 6..1819 1..1814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:36 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RI 3..2040 1..2034 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:00 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
gus-RI 3..2040 1..2034 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:47 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5116990..5117802 1222..2034 100 <- Minus
2R 5120763..5121652 332..1221 100 <- Minus
2R 5121773..5121840 264..331 100 <- Minus
2R 5121983..5122245 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:47 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5116990..5117802 1222..2034 100 <- Minus
2R 5120763..5121652 332..1221 100 <- Minus
2R 5121773..5121840 264..331 100 <- Minus
2R 5121983..5122245 1..263 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:47 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5116990..5117802 1222..2034 100 <- Minus
2R 5120763..5121652 332..1221 100 <- Minus
2R 5121773..5121840 264..331 100 <- Minus
2R 5121983..5122245 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:36 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1004495..1005307 1222..2034 100 <- Minus
arm_2R 1008268..1009157 332..1221 100 <- Minus
arm_2R 1009278..1009345 264..331 100 <- Minus
arm_2R 1009488..1009750 1..263 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:19:31 Download gff for RE21578.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5118189..5119001 1222..2034 100 <- Minus
2R 5121962..5122851 332..1221 100 <- Minus
2R 5122972..5123039 264..331 100 <- Minus
2R 5123182..5123444 1..263 100   Minus

RE21578.pep Sequence

Translation from 305 to 1360

> RE21578.pep
MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE
RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE
LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH
RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS
VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK
FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY
IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR
R*

RE21578.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12960-PA 255 GF12960-PA 81..250 128..302 388 45.7 Plus
Dana\GF15713-PA 304 GF15713-PA 74..279 129..345 230 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23140-PA 349 GG23140-PA 8..349 10..351 1816 99.1 Plus
Dere\GG22511-PA 255 GG22511-PA 81..250 128..302 387 45.7 Plus
Dere\GG25044-PA 301 GG25044-PA 56..271 119..345 241 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13013-PA 349 GH13013-PA 8..349 10..351 1727 92.4 Plus
Dgri\GH21169-PA 252 GH21169-PA 78..247 128..302 396 46.9 Plus
Dgri\GH11484-PA 283 GH11484-PA 36..256 114..345 230 29.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
gus-PM 279 CG2944-PM 1..279 73..351 1486 100 Plus
gus-PL 279 CG2944-PL 1..279 73..351 1486 100 Plus
gus-PK 279 CG2944-PK 1..279 73..351 1486 100 Plus
gus-PJ 279 CG2944-PJ 1..279 73..351 1486 100 Plus
gus-PI 279 CG2944-PI 1..279 73..351 1486 100 Plus
gus-PH 279 CG2944-PH 1..279 73..351 1486 100 Plus
gus-PG 279 CG2944-PG 1..279 73..351 1486 100 Plus
Fsn-PA 255 CG4643-PA 81..250 128..302 394 45.7 Plus
Fsn-PB 255 CG4643-PB 81..250 128..302 394 45.7 Plus
SP555-PD 293 CG14041-PD 19..271 58..345 238 28.2 Plus
SP555-PB 293 CG14041-PB 19..271 58..345 238 28.2 Plus
SP555-PC 301 CG14041-PC 19..271 58..345 238 28.2 Plus
SP555-PA 301 CG14041-PA 19..271 58..345 238 28.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18267-PA 349 GI18267-PA 8..349 10..351 1731 92.7 Plus
Dmoj\GI18764-PA 252 GI18764-PA 78..247 128..302 396 46.3 Plus
Dmoj\GI16979-PA 316 GI16979-PA 85..290 129..345 209 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15433-PA 349 GL15433-PA 8..349 10..351 1779 96.2 Plus
Dper\GL10506-PA 255 GL10506-PA 81..250 128..302 393 46.9 Plus
Dper\GL26545-PA 292 GL26545-PA 51..270 121..345 228 28.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23998-PA 349 GA23998-PA 8..349 10..351 1779 96.2 Plus
Dpse\GA18323-PA 255 GA18323-PA 81..250 128..302 393 46.9 Plus
Dpse\GA12721-PA 292 GA12721-PA 51..270 121..345 228 28.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26734-PA 349 GM26734-PA 8..349 10..351 1827 100 Plus
Dsec\GM20297-PA 255 GM20297-PA 62..250 110..302 390 43.3 Plus
Dsec\GM18519-PA 301 GM18519-PA 56..271 119..345 239 28.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16681-PA 349 GD16681-PA 8..349 10..351 1827 100 Plus
Dsim\GD25778-PA 245 GD25778-PA 81..240 128..302 332 41.7 Plus
Dsim\GD12021-PA 301 GD12021-PA 56..271 119..345 240 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21895-PA 349 GJ21895-PA 8..349 10..351 1731 92.4 Plus
Dvir\GJ21788-PA 252 GJ21788-PA 78..247 128..302 393 46.3 Plus
Dvir\GJ17226-PA 299 GJ17226-PA 53..272 115..345 226 30.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14868-PA 349 GK14868-PA 8..349 10..351 1757 94.7 Plus
Dwil\GK22006-PA 255 GK22006-PA 81..250 128..302 390 46.3 Plus
Dwil\GK24858-PA 301 GK24858-PA 64..276 119..345 219 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\gus-PA 349 GE11348-PA 8..349 10..351 1812 98.8 Plus
Dyak\GE13381-PA 255 GE13381-PA 81..250 128..302 381 45.1 Plus
Dyak\GE11313-PA 303 GE11313-PA 58..273 119..345 236 28.3 Plus

RE21578.hyp Sequence

Translation from 305 to 1360

> RE21578.hyp
MHICIYMSMYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFE
RLRLSYKIAIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRE
LQADFVKPARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFH
RHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHS
VGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDK
FLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRY
IGGLDPEPLPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNR
R*

RE21578.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
gus-PM 279 CG2944-PM 1..279 73..351 1486 100 Plus
gus-PL 279 CG2944-PL 1..279 73..351 1486 100 Plus
gus-PK 279 CG2944-PK 1..279 73..351 1486 100 Plus
gus-PJ 279 CG2944-PJ 1..279 73..351 1486 100 Plus
gus-PI 279 CG2944-PI 1..279 73..351 1486 100 Plus