BDGP Sequence Production Resources |
Search the DGRC for RE21580
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 215 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mab-21-RA |
Protein status: | RE21580.pep: gold |
Preliminary Size: | 2060 |
Sequenced Size: | 2095 |
Gene | Date | Evidence |
---|---|---|
CG4746 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4746 | 2002-06-26 | Blastp of sequenced clone |
CG4746 | 2003-01-01 | Sim4 clustering to Release 3 |
mab-21 | 2008-04-29 | Release 5.5 accounting |
mab-21 | 2008-08-15 | Release 5.9 accounting |
mab-21 | 2008-12-18 | 5.12 accounting |
2095 bp (2095 high quality bases) assembled on 2002-06-26
GenBank Submission: AY128466
> RE21580.complete AATCGGTCAATGTTGAGTTGACGGCGCGAGAAGACGCGGGAGAAAGAGAG CGGAGAATTGAAGAGCTAGTTGATGAATCAGAAAAAAGAATTAGGGTCCC CGTCGCTGTGCCGTCTTGCAGAATCTAAAAGAATCTAAATATCACAATAT AGGGATACCAAATTGAAAGAATCAAAAAACGAGAAACGAAAATAATCCAA GTTGCAGAACCGTCGCTGTGCCGTTAAATTACTTATTGTTTTTTGTGTGT GACTAACTACATGTGTGCCTCCTAGGTAATGAGTGAAGTTGGCAGTGATT CCAACAGCAGAGACTAAAGACTTTTGGGCGCCACCAAGTGCCCCGCCGTG TGGAGAATGCTGGTGCCGTCGGACATGATTGCGGCGCAGTCCAAGATGGT CTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTGCGCAAGGCGC AGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCAGGACGTGCTC AAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGCTGAACGACTA CAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACGGAATTCGAGA TCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGTGGACGATGGC ACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAAGGAAGAGATC CATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTATCTGTCCGCCC GAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGCCTGCGACAAG TGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCACGGAGGTAAA GCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCCGCCTTTAAGT GCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCTGCCGGGCATC CCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCGAGGGATTCGA CATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAACTCCGCCATGG AGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAACCGGCTGCTG CAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGACCCTGCGTGA TCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTACCACCTGAAGA CCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGATGGAATGGGAG GAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGCAGCTGATATC CTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCCAATATGGATC TGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGCCAAGCAGGTT TGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCCTGGAGGAGCT GTAGAGCTGCAGAGCTGCAGAGCTGTAGAGGCACCAGCACACACTAAGCA CTAGCTACTACGAGAATCCATTGGATCTGCGGACGCTGCGGGGGCAGAAC CGCCACTGGGACTTCTTTTTTTTCATACGCCTTTTGTTTTTTTAGTGATT TTTTTTTCTACAACTAAAGACAAAGGATCGCAAGGATCAAGGGCGCTGGG AGGGTCGAAGCTGGAGAAGGAGAAATGTGTGAGAAAGATAGAGAGAAAGC AGTGAAATTGTAACCCAAATACTATTTGATATTTCGCTAGATCGTAACTT AAGTTTAGGTGCTTTCGAAAAGTATACGCCGCTTACAGAGTTTCCTATAA TTAGAGCATACTTAGTGTTATCCATTTAGATCGTCATCGTCGCAAAACGC ACAAAAGTTACCAACTAGTTACATTTGTATGTACGACATTTTTTTTTTTT TTATTGGTCCATTTGCTATTAGCAAAGTGCAGAGCAAAATTAGCTAAATT AGCTGTAAGTCCTAATGAAACTGAGACAGCCGAGTGAAGGAATATTTCCC CGTCGGTCCTAAATTATTTATTCTATGTTTTTGCCTTCTTCTTGTGAGTT TAGTCAATAAAACGTAAGTTTTTTCAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mab-21-RA | 2113 | mab-21-RA | 30..2112 | 1..2083 | 10310 | 99.8 | Plus |
mab-21.a | 1173 | mab-21.a | 1..1104 | 1..1104 | 5505 | 99.9 | Plus |
CG4766-RA | 2815 | CG4766-RA | 903..1358 | 561..1016 | 1065 | 82.2 | Plus |
CG4766-RA | 2815 | CG4766-RA | 1397..1756 | 1046..1405 | 840 | 82.2 | Plus |
CG4766-RA | 2815 | CG4766-RA | 825..878 | 483..536 | 165 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5904333..5905437 | 1105..1 | 5450 | 99.5 | Minus |
chrX | 22417052 | chrX | 5900458..5901418 | 2073..1103 | 4555 | 98.7 | Minus |
chrX | 22417052 | chrX | 5891254..5891807 | 1105..561 | 1130 | 80.7 | Minus |
chrX | 22417052 | chrX | 5890844..5891138 | 1405..1111 | 650 | 81.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 6012074..6013178 | 1105..1 | 5510 | 99.9 | Minus |
X | 23542271 | X | 6008179..6009159 | 2083..1103 | 4795 | 99.7 | Minus |
X | 23542271 | X | 5998946..5999499 | 1105..561 | 1145 | 80.9 | Minus |
X | 23542271 | X | 5998522..5998816 | 1405..1111 | 650 | 81.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 6020172..6021276 | 1105..1 | 5510 | 99.9 | Minus |
X | 23527363 | X | 6016277..6017257 | 2083..1103 | 4815 | 99.6 | Minus |
X | 23527363 | X | 6007142..6007597 | 1016..561 | 1065 | 82.2 | Minus |
X | 23527363 | X | 6006620..6006914 | 1405..1111 | 650 | 81.3 | Minus |
X | 23527363 | X | 6007044..6007103 | 1105..1046 | 225 | 91.6 | Minus |
X | 23527363 | X | 6008115..6008168 | 536..483 | 165 | 87 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5900453..5901416 | 1105..2079 | 95 | <- | Minus |
chrX | 5904334..5905437 | 1..1104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..1098 | 357..1454 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..1098 | 357..1454 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..1098 | 357..1454 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..1098 | 357..1454 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..1098 | 357..1454 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..2079 | 1..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..2079 | 1..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 4..2082 | 1..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 1..2079 | 1..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mab-21-RA | 4..2082 | 1..2079 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6008183..6009157 | 1105..2079 | 99 | <- | Minus |
X | 6012075..6013178 | 1..1104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6008183..6009157 | 1105..2079 | 99 | <- | Minus |
X | 6012075..6013178 | 1..1104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6008183..6009157 | 1105..2079 | 99 | <- | Minus |
X | 6012075..6013178 | 1..1104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5902216..5903190 | 1105..2079 | 99 | <- | Minus |
arm_X | 5906108..5907211 | 1..1104 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 6016281..6017255 | 1105..2079 | 99 | <- | Minus |
X | 6020173..6021276 | 1..1104 | 99 | Minus |
Translation from 356 to 1453
> RE21580.hyp MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR LTRIMLTNVRCLEEL*
Translation from 356 to 1453
> RE21580.pep MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR LTRIMLTNVRCLEEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22066-PA | 365 | GF22066-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dana\GF22067-PA | 369 | GF22067-PA | 1..369 | 1..365 | 1621 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18458-PA | 365 | GG18458-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dere\GG18459-PA | 368 | GG18459-PA | 1..368 | 1..365 | 1606 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24594-PA | 365 | GH24594-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dgri\GH24596-PA | 368 | GH24596-PA | 1..368 | 1..365 | 1585 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mab-21-PA | 365 | CG4746-PA | 1..365 | 1..365 | 1922 | 100 | Plus |
CG4766-PA | 368 | CG4766-PA | 1..368 | 1..365 | 1567 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15264-PA | 365 | GI15264-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dmoj\GI15265-PA | 369 | GI15265-PA | 1..369 | 1..365 | 1611 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14960-PA | 365 | GL14960-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dper\GL14962-PA | 368 | GL14962-PA | 1..368 | 1..365 | 1608 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18400-PA | 365 | GA18400-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dpse\GA18415-PA | 368 | GA18415-PA | 1..368 | 1..365 | 1610 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12604-PA | 355 | GM12604-PA | 1..355 | 1..365 | 1526 | 74.7 | Plus |
Dsec\GM12602-PA | 220 | GM12602-PA | 1..220 | 146..365 | 1195 | 100 | Plus |
Dsec\GM12601-PA | 109 | GM12601-PA | 1..102 | 1..102 | 497 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16222-PA | 368 | GD16222-PA | 1..368 | 1..365 | 1611 | 78 | Plus |
Dsim\GD16221-PA | 150 | GD16221-PA | 1..150 | 216..365 | 806 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14837-PA | 365 | GJ14837-PA | 1..365 | 1..365 | 1962 | 100 | Plus |
Dvir\GJ14839-PA | 368 | GJ14839-PA | 1..368 | 1..365 | 1609 | 78.3 | Plus |