Clone RE21580 Report

Search the DGRC for RE21580

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:215
Well:80
Vector:pFlc-1
Associated Gene/Transcriptmab-21-RA
Protein status:RE21580.pep: gold
Preliminary Size:2060
Sequenced Size:2095

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4746 2002-01-01 Sim4 clustering to Release 2
CG4746 2002-06-26 Blastp of sequenced clone
CG4746 2003-01-01 Sim4 clustering to Release 3
mab-21 2008-04-29 Release 5.5 accounting
mab-21 2008-08-15 Release 5.9 accounting
mab-21 2008-12-18 5.12 accounting

Clone Sequence Records

RE21580.complete Sequence

2095 bp (2095 high quality bases) assembled on 2002-06-26

GenBank Submission: AY128466

> RE21580.complete
AATCGGTCAATGTTGAGTTGACGGCGCGAGAAGACGCGGGAGAAAGAGAG
CGGAGAATTGAAGAGCTAGTTGATGAATCAGAAAAAAGAATTAGGGTCCC
CGTCGCTGTGCCGTCTTGCAGAATCTAAAAGAATCTAAATATCACAATAT
AGGGATACCAAATTGAAAGAATCAAAAAACGAGAAACGAAAATAATCCAA
GTTGCAGAACCGTCGCTGTGCCGTTAAATTACTTATTGTTTTTTGTGTGT
GACTAACTACATGTGTGCCTCCTAGGTAATGAGTGAAGTTGGCAGTGATT
CCAACAGCAGAGACTAAAGACTTTTGGGCGCCACCAAGTGCCCCGCCGTG
TGGAGAATGCTGGTGCCGTCGGACATGATTGCGGCGCAGTCCAAGATGGT
CTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTGCGCAAGGCGC
AGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCAGGACGTGCTC
AAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGCTGAACGACTA
CAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACGGAATTCGAGA
TCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGTGGACGATGGC
ACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAAGGAAGAGATC
CATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTATCTGTCCGCCC
GAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGCCTGCGACAAG
TGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCACGGAGGTAAA
GCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCCGCCTTTAAGT
GCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCTGCCGGGCATC
CCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCGAGGGATTCGA
CATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAACTCCGCCATGG
AGGGCGACGCCTGGGTGCTCAGCTTCACCGACGCCGAAAACCGGCTGCTG
CAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGACCCTGCGTGA
TCGGCACCTGGACCTGCCCGGCAATCCGGTGACGTCGTACCACCTGAAGA
CCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGATGGAATGGGAG
GAGAACTGCATCGCGGACCGGATCAATGGGATATTCCTGCAGCTGATATC
CTGCCTGCAGTGCCGCCGCTGTCCGCACTACTTCCTGCCCAATATGGATC
TGTTCAAGGGCAAGTCGCCGGGTGCCCTGGAGAATGCCGCCAAGCAGGTT
TGGCGGCTCACCCGGATCATGCTGACCAATGTCCGTTGCCTGGAGGAGCT
GTAGAGCTGCAGAGCTGCAGAGCTGTAGAGGCACCAGCACACACTAAGCA
CTAGCTACTACGAGAATCCATTGGATCTGCGGACGCTGCGGGGGCAGAAC
CGCCACTGGGACTTCTTTTTTTTCATACGCCTTTTGTTTTTTTAGTGATT
TTTTTTTCTACAACTAAAGACAAAGGATCGCAAGGATCAAGGGCGCTGGG
AGGGTCGAAGCTGGAGAAGGAGAAATGTGTGAGAAAGATAGAGAGAAAGC
AGTGAAATTGTAACCCAAATACTATTTGATATTTCGCTAGATCGTAACTT
AAGTTTAGGTGCTTTCGAAAAGTATACGCCGCTTACAGAGTTTCCTATAA
TTAGAGCATACTTAGTGTTATCCATTTAGATCGTCATCGTCGCAAAACGC
ACAAAAGTTACCAACTAGTTACATTTGTATGTACGACATTTTTTTTTTTT
TTATTGGTCCATTTGCTATTAGCAAAGTGCAGAGCAAAATTAGCTAAATT
AGCTGTAAGTCCTAATGAAACTGAGACAGCCGAGTGAAGGAATATTTCCC
CGTCGGTCCTAAATTATTTATTCTATGTTTTTGCCTTCTTCTTGTGAGTT
TAGTCAATAAAACGTAAGTTTTTTCAACGAAAAAAAAAAAAAAAA

RE21580.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-RA 2113 mab-21-RA 30..2112 1..2083 10310 99.8 Plus
mab-21.a 1173 mab-21.a 1..1104 1..1104 5505 99.9 Plus
CG4766-RA 2815 CG4766-RA 903..1358 561..1016 1065 82.2 Plus
CG4766-RA 2815 CG4766-RA 1397..1756 1046..1405 840 82.2 Plus
CG4766-RA 2815 CG4766-RA 825..878 483..536 165 87 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5904333..5905437 1105..1 5450 99.5 Minus
chrX 22417052 chrX 5900458..5901418 2073..1103 4555 98.7 Minus
chrX 22417052 chrX 5891254..5891807 1105..561 1130 80.7 Minus
chrX 22417052 chrX 5890844..5891138 1405..1111 650 81.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6012074..6013178 1105..1 5510 99.9 Minus
X 23542271 X 6008179..6009159 2083..1103 4795 99.7 Minus
X 23542271 X 5998946..5999499 1105..561 1145 80.9 Minus
X 23542271 X 5998522..5998816 1405..1111 650 81.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6020172..6021276 1105..1 5510 99.9 Minus
X 23527363 X 6016277..6017257 2083..1103 4815 99.6 Minus
X 23527363 X 6007142..6007597 1016..561 1065 82.2 Minus
X 23527363 X 6006620..6006914 1405..1111 650 81.3 Minus
X 23527363 X 6007044..6007103 1105..1046 225 91.6 Minus
X 23527363 X 6008115..6008168 536..483 165 87 Minus
Blast to na_te.dros performed on 2019-03-16 03:13:12 has no hits.

RE21580.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:05 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5900453..5901416 1105..2079 95 <- Minus
chrX 5904334..5905437 1..1104 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:44 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 357..1454 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:45 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 357..1454 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:30 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 357..1454 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:57 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 357..1454 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:49 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..1098 357..1454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:45 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..2079 1..2079 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:45 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..2079 1..2079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:30 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 4..2082 1..2079 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:58 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 1..2079 1..2079 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:49 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
mab-21-RA 4..2082 1..2079 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:05 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
X 6008183..6009157 1105..2079 99 <- Minus
X 6012075..6013178 1..1104 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:05 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
X 6008183..6009157 1105..2079 99 <- Minus
X 6012075..6013178 1..1104 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:05 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
X 6008183..6009157 1105..2079 99 <- Minus
X 6012075..6013178 1..1104 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:30 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5902216..5903190 1105..2079 99 <- Minus
arm_X 5906108..5907211 1..1104 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:13:25 Download gff for RE21580.complete
Subject Subject Range Query Range Percent Splice Strand
X 6016281..6017255 1105..2079 99 <- Minus
X 6020173..6021276 1..1104 99   Minus

RE21580.hyp Sequence

Translation from 356 to 1453

> RE21580.hyp
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEEL*

RE21580.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-PA 365 CG4746-PA 1..365 1..365 1922 100 Plus
CG4766-PA 368 CG4766-PA 1..368 1..365 1567 77.7 Plus

RE21580.pep Sequence

Translation from 356 to 1453

> RE21580.pep
MLVPSDMIAAQSKMVYQMNKYCADRVQVRKAQIHKQIQEVCRIVQDVLKE
VEVQEPRFISSLNDYNGRFEGLEVISPTEFEIIIYLNQMGVLNFVDDGTL
PGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQACDKCA
YRDIVKMIADTTEVKLRIRERIIVQITPAFKCAGLWPRSASHWPLPGIPW
PHPNIVAEVKTEGFDMLSKECIALQGKNSAMEGDAWVLSFTDAENRLLQG
ASRRRCLSILKTLRDRHLDLPGNPVTSYHLKTLLLYECEKHPREMEWEEN
CIADRINGIFLQLISCLQCRRCPHYFLPNMDLFKGKSPGALENAAKQVWR
LTRIMLTNVRCLEEL*

RE21580.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22066-PA 365 GF22066-PA 1..365 1..365 1962 100 Plus
Dana\GF22067-PA 369 GF22067-PA 1..369 1..365 1621 78.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18458-PA 365 GG18458-PA 1..365 1..365 1962 100 Plus
Dere\GG18459-PA 368 GG18459-PA 1..368 1..365 1606 77.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24594-PA 365 GH24594-PA 1..365 1..365 1962 100 Plus
Dgri\GH24596-PA 368 GH24596-PA 1..368 1..365 1585 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
mab-21-PA 365 CG4746-PA 1..365 1..365 1922 100 Plus
CG4766-PA 368 CG4766-PA 1..368 1..365 1567 77.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15264-PA 365 GI15264-PA 1..365 1..365 1962 100 Plus
Dmoj\GI15265-PA 369 GI15265-PA 1..369 1..365 1611 78 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14960-PA 365 GL14960-PA 1..365 1..365 1962 100 Plus
Dper\GL14962-PA 368 GL14962-PA 1..368 1..365 1608 78.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18400-PA 365 GA18400-PA 1..365 1..365 1962 100 Plus
Dpse\GA18415-PA 368 GA18415-PA 1..368 1..365 1610 78.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12604-PA 355 GM12604-PA 1..355 1..365 1526 74.7 Plus
Dsec\GM12602-PA 220 GM12602-PA 1..220 146..365 1195 100 Plus
Dsec\GM12601-PA 109 GM12601-PA 1..102 1..102 497 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:58:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16222-PA 368 GD16222-PA 1..368 1..365 1611 78 Plus
Dsim\GD16221-PA 150 GD16221-PA 1..150 216..365 806 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14837-PA 365 GJ14837-PA 1..365 1..365 1962 100 Plus
Dvir\GJ14839-PA 368 GJ14839-PA 1..368 1..365 1609 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19726-PA 365 GK19726-PA 1..365 1..365 1958 99.7 Plus
Dwil\GK19727-PA 368 GK19727-PA 1..368 1..365 1598 77.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15680-PA 365 GE15680-PA 1..365 1..365 1962 100 Plus
Dyak\GE15682-PA 368 GE15682-PA 1..368 1..365 1593 76.9 Plus