Clone RE21692 Report

Search the DGRC for RE21692

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:216
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG5642-RA
Protein status:RE21692.pep: gold
Preliminary Size:1857
Sequenced Size:1861

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5642 2002-01-01 Sim4 clustering to Release 2
CG5642 2002-02-22 Blastp of sequenced clone
CG5642 2003-01-01 Sim4 clustering to Release 3
CG5642 2008-04-29 Release 5.5 accounting
CG5642 2008-08-15 Release 5.9 accounting
CG5642 2008-12-18 5.12 accounting

Clone Sequence Records

RE21692.complete Sequence

1861 bp (1861 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089607

> RE21692.complete
GGTTGGTCACACTGTTTATCCCTCTTTTCGCCAAAAATTTGTTGGCGTGT
TGTCAATTTCCTAAGCATTTGATCGGTTTTTTCGTTTTGTGTGTAACCCG
GAGAGGATAAAACAGCGACAATGTACGGTGGAGACGAATACGCAACCAAC
TCGGATTACTACGATGACTACGCTCATACCGGAGACCCGCAACTGGACAT
GGAGTACGAGAGGAACTACTACGCCGCCCGGATGCCGGACAACGTCAAGT
ACTTCCTCATAAACTTCTGCCAGGCGATCAAAGAGGGCAACTTGTACGAC
ATCCAAAACATGTACGAGAACACGTTCCCGCAGATCAGCGACCACCACTT
CGACAAGACTGCTTGGCCCGAGGAGCAGGAGGTGGCTGCTATTGTAGACA
ACGACAAGGTCTTCCTGATCTTATACAAGGAGTTGTACTATCGCCACATC
CACGCCCGCATCCCCGGTGGTCCCAAGTTGGAGCAGAGGATCAACTCGTT
CTTCAACTACTGCGACTTCTTCAACCTGATCATCTCGGCCCAGAACCCAG
TGATGCTGGAGCTGCCCGACATCTGGCTGTGGGAGTTGGTGGATGAGTTC
GTGTATCAGTTCCAGAACTTCGCGCAGTATCGCGCCCGCCTTACGGAGAA
ATCGCAGGATGAGATCCAGCAGCTGTGCGTGAACCACAGCAACGAGTGGA
GCATTCTCTGCATCCTCAACGTTCTGCATTCCCTTGTGGACATCTCGAAC
ATCAAGAAGCAGCTGGAGGCCATCTCTCAAGGTGTTGATCCCCAAACCGT
GGCCGGTGACTTCGGCAAACTGTCCTTCTACAAGATGCTGGGATACTTCT
CCCTTGTCGGACTGCTGCGCGTTCATTCGCTGCTGGGTGACTACTACCAG
GCCATCAAGGTGCTGGAGCCCATTGAGATCCACAAGAAGTCCGCCTATTC
GCACATCCCCGCCTGCCAAATCTCGACGTCGTACTACGTGGGCTTCGCCT
ACATGATGATGCGCCGCTACGCTGATGCCATCCGCACCTTTTCTGATATC
CTCCTGTACATTCAGCGTACCAAGCAGCTGTACAGCACGCGTTCATACCA
AAACGATCAAATCAACAAGCAGGCCGAGCAGATGTACCATCTTTTGGCCA
TCTGCCTGGTACTCCATCCCCAGTGCATCGACGAGTCCATCCAGCAGGTG
CTCAGGGAAAAGAACTACCACGACGCCATGTTTAAGATGCAGTGCGGTGA
TCTGGAGGTCTTCAAGTCCTTCTTTGTCTTCGCCTGCCCACGTTTCGTGA
GCCCCTGCCCGCCAGCTGTAGACGCACCCATGGACGACTACGTCAAGGAC
CCCATGGAACACCAGTTGCAGGTTTTCATGGATGAGGTGCGCCAGCAGAA
GGATCTGCCCACAACGCGCTCGTATCTAAAGCTGTACACCACCCTGCCGC
TGACCAAACTGGCATCTTTCATCGATCCCAACGCCAGCGAGGATGACGTG
TCGAAGCTGCTGATTCGCCTGCTTTGCTTCAAGCACAAAATGCGCAACCT
AGTGTGGAGCAAGGGACCCAGCGGCCTGGAAGGCACATTCAAGTCTGGCT
CCGAGTTGGACTTCTACATCGACGACGACATGATCCACATAGCCGACACC
AAGGTTTCACATCGGTATGGCGACTTCTTTGTGCGTAAAATTCTTAAGTT
CAACGATCTGAATCGCAAATTGAAGAACATCAACATTTAAGCCGACTCCT
TGTGACCCTTAATGATAAATTTAATATTCCATACTGGACCGATTTGTTTC
GATATCAATAAAAATCGCTTGCGATCTTGCGCAAGTTTGGTCCTCAAAAA
AAAAAAAAAAA

RE21692.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5642-RA 2013 CG5642-RA 127..1974 2..1849 9225 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12134494..12135467 1605..632 4855 99.9 Minus
chr3L 24539361 chr3L 12135521..12136000 632..153 2385 99.8 Minus
chr3L 24539361 chr3L 12134195..12134436 1845..1604 1210 100 Minus
chr3L 24539361 chr3L 12136704..12136856 154..2 750 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12143745..12144718 1605..632 4855 99.9 Minus
3L 28110227 3L 12144772..12145251 632..153 2400 100 Minus
3L 28110227 3L 12143442..12143687 1849..1604 1230 100 Minus
3L 28110227 3L 12145955..12146107 154..2 765 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12136845..12137818 1605..632 4855 99.8 Minus
3L 28103327 3L 12137872..12138351 632..153 2400 100 Minus
3L 28103327 3L 12136542..12136787 1849..1604 1230 100 Minus
3L 28103327 3L 12139055..12139207 154..2 765 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:18:56 has no hits.

RE21692.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:19:39 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12134195..12134434 1606..1845 100 <- Minus
chr3L 12134494..12135466 633..1605 99 <- Minus
chr3L 12135521..12135999 154..632 99 <- Minus
chr3L 12136705..12136856 1..153 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:01:52 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1620 121..1740 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:38:58 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1620 121..1740 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:34 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1620 121..1740 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:10 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1620 121..1740 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:52 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1620 121..1740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:03 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 8..1852 1..1845 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:38:58 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 8..1852 1..1845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:34 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1834 12..1845 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:10 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 8..1852 1..1845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:52 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
CG5642-RA 1..1834 12..1845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:39 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12143446..12143685 1606..1845 100 <- Minus
3L 12143745..12144717 633..1605 99 <- Minus
3L 12144772..12145250 154..632 100 <- Minus
3L 12145956..12146107 1..153 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:39 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12143446..12143685 1606..1845 100 <- Minus
3L 12143745..12144717 633..1605 99 <- Minus
3L 12144772..12145250 154..632 100 <- Minus
3L 12145956..12146107 1..153 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:19:39 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12143446..12143685 1606..1845 100 <- Minus
3L 12143745..12144717 633..1605 99 <- Minus
3L 12144772..12145250 154..632 100 <- Minus
3L 12145956..12146107 1..153 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:34 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12136546..12136785 1606..1845 100 <- Minus
arm_3L 12136845..12137817 633..1605 99 <- Minus
arm_3L 12137872..12138350 154..632 100 <- Minus
arm_3L 12139056..12139207 1..153 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:19 Download gff for RE21692.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12136546..12136785 1606..1845 100 <- Minus
3L 12136845..12137817 633..1605 99 <- Minus
3L 12137872..12138350 154..632 100 <- Minus
3L 12139056..12139207 1..153 99   Minus

RE21692.pep Sequence

Translation from 120 to 1739

> RE21692.pep
MYGGDEYATNSDYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFC
QAIKEGNLYDIQNMYENTFPQISDHHFDKTAWPEEQEVAAIVDNDKVFLI
LYKELYYRHIHARIPGGPKLEQRINSFFNYCDFFNLIISAQNPVMLELPD
IWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNEWSILCILN
VLHSLVDISNIKKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFSLVGLLR
VHSLLGDYYQAIKVLEPIEIHKKSAYSHIPACQISTSYYVGFAYMMMRRY
ADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAICLVLHP
QCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAV
DAPMDDYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASF
IDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYI
DDDMIHIADTKVSHRYGDFFVRKILKFNDLNRKLKNINI*

RE21692.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25000-PA 539 GF25000-PA 1..539 1..539 2791 95 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13851-PA 539 GG13851-PA 1..539 1..539 2877 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15308-PA 540 GH15308-PA 1..540 1..539 2786 95 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3l-PA 539 CG5642-PA 1..539 1..539 2873 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12903-PA 538 GI12903-PA 1..538 1..539 2811 95.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25016-PA 541 GL25016-PA 4..541 2..539 2762 93.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19025-PA 541 GA19025-PA 4..541 2..539 2768 93.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24677-PA 539 GM24677-PA 1..539 1..539 2903 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12745-PA 539 GD12745-PA 1..539 1..539 2903 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13043-PA 538 GJ13043-PA 1..538 1..539 2813 96.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20774-PA 539 GK20774-PA 1..539 1..539 2802 94.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20146-PA 539 GE20146-PA 1..539 1..539 2873 98.5 Plus

RE21692.hyp Sequence

Translation from 120 to 1739

> RE21692.hyp
MYGGDEYATNSDYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFC
QAIKEGNLYDIQNMYENTFPQISDHHFDKTAWPEEQEVAAIVDNDKVFLI
LYKELYYRHIHARIPGGPKLEQRINSFFNYCDFFNLIISAQNPVMLELPD
IWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNEWSILCILN
VLHSLVDISNIKKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFSLVGLLR
VHSLLGDYYQAIKVLEPIEIHKKSAYSHIPACQISTSYYVGFAYMMMRRY
ADAIRTFSDILLYIQRTKQLYSTRSYQNDQINKQAEQMYHLLAICLVLHP
QCIDESIQQVLREKNYHDAMFKMQCGDLEVFKSFFVFACPRFVSPCPPAV
DAPMDDYVKDPMEHQLQVFMDEVRQQKDLPTTRSYLKLYTTLPLTKLASF
IDPNASEDDVSKLLIRLLCFKHKMRNLVWSKGPSGLEGTFKSGSELDFYI
DDDMIHIADTKVSHRYGDFFVRKILKFNDLNRKLKNINI*

RE21692.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5642-PA 539 CG5642-PA 1..539 1..539 2873 100 Plus