BDGP Sequence Production Resources |
Search the DGRC for RE21703
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 217 |
Well: | 3 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG40198-RB |
Protein status: | RE21703.pep: gold |
Sequenced Size: | 682 |
Gene | Date | Evidence |
---|---|---|
CG15848 | 2002-01-01 | Sim4 clustering to Release 2 |
CG40198 | 2002-04-04 | Blastp of sequenced clone |
CG40198 | 2003-01-01 | Sim4 clustering to Release 3 |
CG40198 | 2008-04-29 | Release 5.5 accounting |
CG40198 | 2008-08-15 | Release 5.9 accounting |
CG40198 | 2008-12-18 | 5.12 accounting |
682 bp (682 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095073
> RE21703.complete TTGTCATAAAGTAGTCGCCAACAGCATGTTGAAAACTATATCGATTGGTG TTCTTATCGCCCTCAGTGGGGCCATCATTGCAGAAGGAAAACCTGTCCTT ATTAAGGTTTTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTTACCAAAA TACAGTGGGAGCATCGCCTTTCACCAGTCAGCTTATCTCTGGTCTTATCT CATCAAAAATTCAACTGTTGAACAGCGTGCTACAGACCAAGTCTTCTTCC GGGGGGTTCCGTATTGGTTTCAATAAGTCTGTCAATTTATTTGGCCCCAC AAGCGCCACGAGCACCACCGAAAGGCCTGTGACACACCATACCACCGAGG TAAACACAGACTTTACTCCGGATGAATCTAGTAGGACTACTCAACTTTTT TACTCGACAACAACAGAAAGTTTTGTCGAAACGCCGATCCCCACAATACA TCCCGAGCCACCAGCCACTACCACTTCAGTGATCCCAATAGAGAGCACCA CATCCGTAACACAACCACCCATCTTGACGACACCAAAACCTGGATACTCC TATCGCACCCCCATTTCCCCCACCAATTAGTTCGGTGAAAATCTATTTTT TGTCAACTCAAATAACGCAGCCCCAGCAATGTTCGCAAATGAGTAAATTT CTATAATTAAGTGACTAAAAAAAAAAAAAAAA
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3RHet | 2505253..2505793 | 126..666 | 100 | <- | Minus |
chr3RHet | 2505853..2505977 | 1..125 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RA | 249..828 | 1..580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RB | 1..555 | 26..580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RC | 1..555 | 26..580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RA | 249..828 | 1..580 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RC | 1..555 | 26..580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RA | 249..914 | 1..666 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RB | 1..666 | 2..666 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RC | 4..669 | 1..666 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RA | 249..914 | 1..666 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG40198-RC | 4..669 | 1..666 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4161508..4162048 | 126..666 | 100 | <- | Minus |
3R | 4162108..4162232 | 1..125 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4161508..4162048 | 126..666 | 100 | <- | Minus |
3R | 4162108..4162232 | 1..125 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 4161508..4162048 | 126..666 | 100 | <- | Minus |
3R | 4162108..4162232 | 1..125 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3RHet | 2505274..2505814 | 126..666 | 100 | <- | Minus |
3RHet | 2505874..2505998 | 1..125 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 3822946..3823486 | 126..666 | 100 | <- | Minus |
3R | 3823546..3823670 | 1..125 | 99 | Minus |
Translation from 0 to 579
> RE21703.hyp SHKVVANSMLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQN TVGASPFTSQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPT SATSTTERPVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIH PEPPATTTSVIPIESTTSVTQPPILTTPKPGYSYRTPISPTN*
Translation from 25 to 579
> RE21703.pep MLKTISIGVLIALSGAIIAEGKPVLIKVFAPSGGYSSASYQNTVGASPFT SQLISGLISSKIQLLNSVLQTKSSSGGFRIGFNKSVNLFGPTSATSTTER PVTHHTTEVNTDFTPDESSRTTQLFYSTTTESFVETPIPTIHPEPPATTT SVIPIESTTSVTQPPILTTPKPGYSYRTPISPTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23136-PA | 201 | GF23136-PA | 1..181 | 1..179 | 301 | 50.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11818-PA | 184 | GG11818-PA | 1..177 | 1..179 | 614 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20635-PA | 244 | GH20635-PA | 1..197 | 1..184 | 351 | 48.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG40198-PB | 184 | CG40198-PB | 1..184 | 1..184 | 929 | 100 | Plus |
CG40198-PC | 184 | CG40198-PC | 1..184 | 1..184 | 929 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23203-PA | 213 | GI23203-PA | 1..155 | 1..159 | 316 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12342-PA | 185 | GL12342-PA | 1..166 | 18..179 | 297 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27473-PA | 185 | GA27473-PA | 1..166 | 18..179 | 289 | 59.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10728-PA | 184 | GM10728-PA | 1..179 | 1..179 | 757 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22865-PA | 205 | GJ22865-PA | 1..179 | 1..184 | 358 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14346-PA | 207 | GK14346-PA | 1..156 | 1..151 | 295 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25376-PA | 168 | GE25376-PA | 1..162 | 18..179 | 658 | 83.3 | Plus |