BDGP Sequence Production Resources |
Search the DGRC for RE21773
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 217 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cp1-RC |
Protein status: | RE21773.pep: gold |
Sequenced Size: | 1385 |
Gene | Date | Evidence |
---|---|---|
Cp1-RC | 2009-06-22 | Replacement based on scoring |
1385 bp assembled on 2009-08-05
GenBank Submission: BT089036.1
> RE21773.complete ACCTGATAGCCAGATGAATCACCTTGGCGTTTTTGAAACCCGTTTTCGCC CTCGAACTAGGCACAAATCGCAGAGGGCACAATTGATTCCAGAACAAATC ACAATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCCTGCTGGCGGTGGC TCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCA AGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGAGGAGCGTTTCCGC CTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAACCAGCG ATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTCAATAAGTACGCCG ATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGGCTTCAACTACACT CTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCAAGGGAGTCACCTT CATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTGGACTGGCGCACCA AGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTGCGGCAGCTGCTGG GCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATTTCCGCAAGTCCGG TGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGATTGCTCCACCAAGT ACGGCAACAATGGATGCAACGGCGGTCTCATGGACAATGCCTTCCGCTAT ATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCTATCCCTACGAGGC CATCGATGACTCGTGCCACTTTAACAAGGGCACAGTCGGAGCCACCGATC GTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAAGATGGCCGAGGCT GTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATGCCTCCCACGAGTC GTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCGCAGTGTGATGCCC AGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGGCACCGACGAGTCC GGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCACCACCTGGGGCGA CAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAACCAGTGCGGCATCG CTAGCGCCTCCAGCTATCCCCTGGTCTAGAGCAGAACTGATGTAGTTTAG CCCCAGCATTCATATGATATGATTTAGAAAAGAAACAGAAAAGATACCAA CGCAAGCATCTCAAAAATGAACTTTAATAATTTAGCCCAACCTCATATTT AATGAACTAATTTTGTAATGGGTCCATTGTATTCGCGTTTCTCTGCCATC ATGTATGATATAGGTGAACAACAAATCTGTTGATGTTTGTAGAAAAATAA ATAAAAATTATATAATTTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9854359..9855311 | 417..1369 | 4765 | 100 | Plus |
chr2R | 21145070 | chr2R | 9854083..9854299 | 201..417 | 1085 | 100 | Plus |
chr2R | 21145070 | chr2R | 9849548..9849665 | 85..202 | 575 | 99.2 | Plus |
chr2R | 21145070 | chr2R | 9848511..9848595 | 1..85 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13967029..13967986 | 417..1374 | 4790 | 100 | Plus |
2R | 25286936 | 2R | 13966753..13966969 | 201..417 | 1085 | 100 | Plus |
2R | 25286936 | 2R | 13962219..13962336 | 85..202 | 590 | 100 | Plus |
2R | 25286936 | 2R | 13961181..13961265 | 1..85 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13968228..13969185 | 417..1374 | 4790 | 100 | Plus |
2R | 25260384 | 2R | 13967952..13968168 | 201..417 | 1085 | 100 | Plus |
2R | 25260384 | 2R | 13963418..13963535 | 85..202 | 590 | 100 | Plus |
2R | 25260384 | 2R | 13962380..13962464 | 1..85 | 425 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6450..6519 | 1159..1230 | 129 | 68.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9848511..9848595 | 1..85 | 100 | -> | Plus |
chr2R | 9849549..9849665 | 86..202 | 99 | -> | Plus |
chr2R | 9854085..9854299 | 203..417 | 100 | -> | Plus |
chr2R | 9854360..9855283 | 418..1341 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1116 | 14..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1116 | 14..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1116 | 14..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1116 | 14..1129 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1369 | 1..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1369 | 1..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1369 | 1..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cp1-RC | 1..1369 | 1..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13962220..13962336 | 86..202 | 100 | -> | Plus |
2R | 13966755..13966969 | 203..417 | 100 | -> | Plus |
2R | 13961181..13961265 | 1..85 | 100 | -> | Plus |
2R | 13967030..13967981 | 418..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13962220..13962336 | 86..202 | 100 | -> | Plus |
2R | 13966755..13966969 | 203..417 | 100 | -> | Plus |
2R | 13961181..13961265 | 1..85 | 100 | -> | Plus |
2R | 13967030..13967981 | 418..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13962220..13962336 | 86..202 | 100 | -> | Plus |
2R | 13966755..13966969 | 203..417 | 100 | -> | Plus |
2R | 13961181..13961265 | 1..85 | 100 | -> | Plus |
2R | 13967030..13967981 | 418..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9848686..9848770 | 1..85 | 100 | -> | Plus |
arm_2R | 9849725..9849841 | 86..202 | 100 | -> | Plus |
arm_2R | 9854260..9854474 | 203..417 | 100 | -> | Plus |
arm_2R | 9854535..9855486 | 418..1369 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13968229..13969180 | 418..1369 | 100 | Plus | |
2R | 13962380..13962464 | 1..85 | 100 | -> | Plus |
2R | 13963419..13963535 | 86..202 | 100 | -> | Plus |
2R | 13967954..13968168 | 203..417 | 100 | -> | Plus |
Translation from 0 to 1128
> RE21773.hyp PDSQMNHLGVFETRFRPRTRHKSQRAQLIPEQITMRTAVLLPLLALLAVA QAVSFADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQR FAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTF ISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSG VLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEA IDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGD KGFIKMLRNKENQCGIASASSYPLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cp1-PC | 371 | CG6692-PC | 1..371 | 5..375 | 1979 | 100 | Plus |
Cp1-PA | 341 | CG6692-PA | 1..341 | 35..375 | 1822 | 100 | Plus |
Cp1-PE | 338 | CG6692-PE | 31..338 | 68..375 | 1661 | 100 | Plus |
Cp1-PD | 249 | CG6692-PD | 1..249 | 127..375 | 1349 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 79..390 | 60..375 | 621 | 41.7 | Plus |
Translation from 1 to 1128
> RE21773.pep PDSQMNHLGVFETRFRPRTRHKSQRAQLIPEQITMRTAVLLPLLALLAVA QAVSFADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQR FAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTF ISPAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSG VLVSLSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEA IDDSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHES FQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGD KGFIKMLRNKENQCGIASASSYPLV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13722-PA | 417 | GF13722-PA | 107..417 | 65..375 | 1593 | 92.6 | Plus |
Dana\GF17600-PA | 333 | GF17600-PA | 1..333 | 35..375 | 1066 | 57.9 | Plus |
Dana\GF17358-PA | 329 | GF17358-PA | 1..329 | 35..375 | 910 | 51.9 | Plus |
Dana\GF13714-PA | 352 | GF13714-PA | 9..352 | 35..375 | 620 | 39 | Plus |
Dana\GF13132-PA | 392 | GF13132-PA | 68..392 | 36..375 | 620 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20414-PA | 341 | GG20414-PA | 1..341 | 35..375 | 1813 | 96.5 | Plus |
Dere\GG20405-PA | 352 | GG20405-PA | 9..352 | 35..375 | 617 | 37.7 | Plus |
Dere\GG20691-PA | 378 | GG20691-PA | 53..378 | 48..375 | 615 | 39 | Plus |
Dere\GG11133-PA | 615 | GG11133-PA | 303..610 | 57..371 | 601 | 39.9 | Plus |
Dere\GG23942-PA | 338 | GG23942-PA | 35..338 | 62..375 | 588 | 36 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22826-PA | 340 | GH22826-PA | 1..340 | 35..375 | 1634 | 85.9 | Plus |
Dgri\GH20767-PA | 329 | GH20767-PA | 4..329 | 40..375 | 785 | 46.1 | Plus |
Dgri\GH21411-PA | 391 | GH21411-PA | 81..391 | 60..375 | 624 | 39.1 | Plus |
Dgri\GH23906-PA | 358 | GH23906-PA | 48..358 | 60..375 | 621 | 39.1 | Plus |
Dgri\GH21038-PA | 349 | GH21038-PA | 47..349 | 72..375 | 609 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cp1-PC | 371 | CG6692-PC | 1..371 | 5..375 | 1979 | 100 | Plus |
Cp1-PA | 341 | CG6692-PA | 1..341 | 35..375 | 1822 | 100 | Plus |
Cp1-PE | 338 | CG6692-PE | 31..338 | 68..375 | 1661 | 100 | Plus |
Cp1-PD | 249 | CG6692-PD | 1..249 | 127..375 | 1349 | 100 | Plus |
CG4847-PE | 390 | CG4847-PE | 79..390 | 60..375 | 621 | 41.7 | Plus |
CG4847-PC | 390 | CG4847-PC | 79..390 | 60..375 | 621 | 41.7 | Plus |
CG4847-PA | 390 | CG4847-PA | 79..390 | 60..375 | 621 | 41.7 | Plus |
CG4847-PD | 420 | CG4847-PD | 109..420 | 60..375 | 621 | 41.7 | Plus |
CG6347-PA | 352 | CG6347-PA | 15..352 | 41..375 | 617 | 39.8 | Plus |
CG11459-PB | 336 | CG11459-PB | 3..334 | 34..373 | 603 | 37.9 | Plus |
CG11459-PA | 336 | CG11459-PA | 3..334 | 34..373 | 603 | 37.9 | Plus |
26-29-p-PA | 549 | CG8947-PA | 241..546 | 59..372 | 593 | 41.6 | Plus |
CG5367-PA | 338 | CG5367-PA | 35..338 | 62..375 | 587 | 36.3 | Plus |
CG12163-PB | 475 | CG12163-PB | 163..470 | 57..371 | 583 | 39.3 | Plus |
CG12163-PA | 614 | CG12163-PA | 302..609 | 57..371 | 583 | 39.3 | Plus |
Swim-PA | 431 | CG3074-PA | 201..422 | 170..375 | 279 | 32.2 | Plus |
Swim-PB | 431 | CG3074-PB | 201..422 | 170..375 | 279 | 32.2 | Plus |
CG6337-PB | 340 | CG6337-PB | 27..336 | 62..373 | 227 | 26.1 | Plus |
CG6337-PA | 340 | CG6337-PA | 27..336 | 62..373 | 227 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21205-PA | 339 | GI21205-PA | 1..339 | 35..375 | 1670 | 88 | Plus |
Dmoj\GI20850-PA | 329 | GI20850-PA | 4..329 | 40..375 | 841 | 49.1 | Plus |
Dmoj\GI13676-PA | 324 | GI13676-PA | 1..324 | 35..375 | 755 | 43.9 | Plus |
Dmoj\GI18587-PA | 366 | GI18587-PA | 62..366 | 66..375 | 616 | 40.1 | Plus |
Dmoj\GI11630-PA | 547 | GI11630-PA | 239..544 | 59..372 | 605 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17172-PA | 341 | GL17172-PA | 1..341 | 35..375 | 1732 | 91.8 | Plus |
Dper\GL15686-PA | 323 | GL15686-PA | 1..323 | 35..375 | 708 | 42.6 | Plus |
Dper\GL11434-PA | 372 | GL11434-PA | 61..372 | 60..375 | 627 | 39.8 | Plus |
Dper\GL17477-PA | 353 | GL17477-PA | 9..353 | 35..375 | 624 | 38.6 | Plus |
Dper\GL24978-PA | 338 | GL24978-PA | 20..338 | 52..375 | 580 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25021-PA | 341 | GA25021-PA | 1..341 | 35..375 | 1731 | 91.8 | Plus |
Dpse\GA25021-PB | 319 | GA25021-PB | 11..319 | 67..375 | 1580 | 92.9 | Plus |
Dpse\GA23505-PA | 323 | GA23505-PA | 1..323 | 35..375 | 713 | 42.9 | Plus |
Dpse\GA18475-PA | 372 | GA18475-PA | 61..372 | 60..375 | 626 | 39.5 | Plus |
Dpse\GA24205-PA | 353 | GA24205-PA | 9..353 | 35..375 | 624 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21500-PA | 341 | GM21500-PA | 1..341 | 35..375 | 1842 | 99.1 | Plus |
Dsec\GM21493-PA | 352 | GM21493-PA | 9..352 | 35..375 | 635 | 39.1 | Plus |
Dsec\GM21790-PA | 382 | GM21790-PA | 71..382 | 60..375 | 628 | 41.1 | Plus |
Dsec\GM10853-PA | 336 | GM10853-PA | 2..336 | 33..375 | 583 | 37.2 | Plus |
Dsec\GM11735-PA | 338 | GM11735-PA | 35..338 | 62..375 | 577 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10995-PA | 341 | GD10995-PA | 1..341 | 35..375 | 1841 | 99.1 | Plus |
Dsim\GD10987-PA | 352 | GD10987-PA | 9..352 | 35..375 | 633 | 39.1 | Plus |
Dsim\GD11280-PA | 382 | GD11280-PA | 71..382 | 60..375 | 630 | 41.1 | Plus |
Dsim\GD14469-PA | 549 | GD14469-PA | 241..546 | 59..372 | 591 | 41.7 | Plus |
Dsim\GD19835-PA | 336 | GD19835-PA | 2..336 | 33..375 | 585 | 37 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20806-PA | 339 | GJ20806-PA | 3..339 | 39..375 | 1655 | 87.8 | Plus |
Dvir\GJ20585-PA | 333 | GJ20585-PA | 4..333 | 40..375 | 850 | 48.1 | Plus |
Dvir\GJ14012-PA | 327 | GJ14012-PA | 1..327 | 35..374 | 800 | 44.4 | Plus |
Dvir\GJ13554-PA | 331 | GJ13554-PA | 1..331 | 35..375 | 776 | 45.9 | Plus |
Dvir\GJ11310-PA | 328 | GJ11310-PA | 7..327 | 43..374 | 740 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19626-PA | 341 | GK19626-PA | 1..341 | 35..375 | 1582 | 81.8 | Plus |
Dwil\GK22909-PA | 370 | GK22909-PA | 59..370 | 60..375 | 605 | 39 | Plus |
Dwil\GK22908-PA | 381 | GK22908-PA | 71..381 | 60..375 | 594 | 39.3 | Plus |
Dwil\GK14287-PA | 610 | GK14287-PA | 297..609 | 57..375 | 586 | 37.5 | Plus |
Dwil\GK16790-PA | 549 | GK16790-PA | 241..546 | 59..372 | 580 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12574-PA | 341 | GE12574-PA | 1..341 | 35..375 | 1826 | 97.9 | Plus |
Dyak\GE12565-PA | 353 | GE12565-PA | 9..353 | 35..375 | 623 | 38.8 | Plus |
Dyak\GE11675-PA | 384 | GE11675-PA | 61..384 | 50..375 | 621 | 39.6 | Plus |
Dyak\GE26053-PA | 338 | GE26053-PA | 35..338 | 62..375 | 600 | 36.6 | Plus |
Dyak\GE10178-PA | 336 | GE10178-PA | 2..336 | 33..375 | 590 | 37.1 | Plus |