Clone RE21802 Report

Search the DGRC for RE21802

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:218
Well:2
Vector:pFlc-1
Associated Gene/TranscriptCG1354-RA
Protein status:RE21802.pep: gold
Preliminary Size:1200
Sequenced Size:1509

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1354 2002-01-01 Sim4 clustering to Release 2
CG1354 2002-04-04 Blastp of sequenced clone
CG1354 2003-01-01 Sim4 clustering to Release 3
CG1354 2008-04-29 Release 5.5 accounting
CG1354 2008-08-15 Release 5.9 accounting
CG1354 2008-12-18 5.12 accounting

Clone Sequence Records

RE21802.complete Sequence

1509 bp (1509 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095074

> RE21802.complete
CTTTTTTCCTTCCACGCCGTCAGCCGCAAAAAACAGCGGACGCTTAAATT
TTCCTGGAGCTGAGTTCAGTGGGCAGCATCCACGCGTTTAGTGAGCTAGA
TCAACGAAGATGCCGCCCAAGAAGCACGACGAACCGGAGCGCAAGCCGCT
GATCGGCAGAATTGGAACGAATCTGAGAATCGGTATCGTTGGCGTTCCCA
ACGTGGGCAAGTCCACTTTTTTCAACGTTCTGACCCAAAGTGCCGCCCCC
GCGGAGAACTTCCCCTTCTGCACCATCAAGCCGAATGAGAGTCGTGTTCC
GGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAGCCGGCCA
GTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTTGGTGAAG
GGAGCCGCCGAGGGTCAGGGACTTGGCAACGACTTCCTCTCGCACATCAG
CGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGATCCGGATG
TGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGAGATCATC
TCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGAACTTGGA
CAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTCAAGCCCG
AATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCAGAAGCGT
CATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCTTGAACAA
GTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAACCTTTCGG
ACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGATCAAGGAA
TGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCTCCGGCGC
CTTCGAGCACCAGCTGACCGAAAAGGACGAACTGGAGCGCAAGGCCTACG
AGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGTGACCGGC
TACAAGGGACTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGGATGAAGT
GAAGGCCTGGACCATCCAGAAGGGCACCAAGGCTCCCCAGGCTGCCGGAC
GCATTCACACCGACTTCGAGAAGGGCTTCATTATGGCCGAGGTGATGCAC
TTCGAGGACTTCAAGGCGGAGGGCAGTGAGGCGAATGCCAAGGCCGCTGG
CAAATATCGCCAACAGGGACGCAACTACACCGTCGAGGATGGCGACATCA
TATTCTTTAAGTTCAACGCCGGCGCTGGCCTCAAGGATGCCAAGAAGAAA
TGATACCGTTTGGCCATGATCATCGCCATGTCCACCGTTTTGTACATTAA
CTTGATCTTGTACTCCCAGATGTTTCGCTTCGCCAGAGGCTAGCTCCTCA
TTATCACATCCCTCACTCTCATGTTCGAGGCCTGAAAATGCATTTTGAAT
TTCCTTTTTTTTTGTACGCTATGTAAACACGCTTATGACACACAAAAAAA
AAAAAAAAA

RE21802.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RA 1877 CG1354-RA 105..1595 5..1495 7440 99.9 Plus
CG1354-RD 1887 CG1354-RD 155..1605 45..1495 7210 99.7 Plus
CG1354-RC 1524 CG1354-RC 131..1524 100..1493 6970 100 Plus
CG1354-RD 1887 CG1354-RD 105..153 5..53 245 100 Plus
CG1354-RC 1524 CG1354-RC 6..54 5..53 245 100 Plus
CG1354-RC 1524 CG1354-RC 56..110 45..99 230 94.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9672919..9673678 734..1493 3740 99.5 Plus
chrX 22417052 chrX 9672269..9672652 350..733 1890 99.5 Plus
chrX 22417052 chrX 9670811..9671003 98..290 965 100 Plus
chrX 22417052 chrX 9672002..9672062 291..351 305 100 Plus
chrX 22417052 chrX 9670512..9670560 5..53 245 100 Plus
chrX 22417052 chrX 9670629..9670674 54..99 215 97.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:41:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9781159..9781920 734..1495 3810 100 Plus
X 23542271 X 9780509..9780892 350..733 1920 100 Plus
X 23542271 X 9779050..9779242 98..290 965 100 Plus
X 23542271 X 9780241..9780301 291..351 305 100 Plus
X 23542271 X 9778751..9778799 5..53 245 100 Plus
X 23542271 X 9778868..9778913 54..99 215 97.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9789257..9790018 734..1495 3810 100 Plus
X 23527363 X 9788607..9788990 350..733 1920 100 Plus
X 23527363 X 9787148..9787340 98..290 965 100 Plus
X 23527363 X 9788339..9788399 291..351 305 100 Plus
X 23527363 X 9786849..9786897 5..53 245 100 Plus
X 23527363 X 9786966..9787011 54..99 215 97.8 Plus
Blast to na_te.dros performed on 2019-03-16 21:06:02 has no hits.

RE21802.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:05 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9670507..9670560 1..53 96 -> Plus
chrX 9670629..9670674 54..99 97 -> Plus
chrX 9670813..9671007 100..294 98 -> Plus
chrX 9672006..9672062 295..351 100 -> Plus
chrX 9672271..9672652 352..733 99 -> Plus
chrX 9672919..9673678 734..1493 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:02 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1194 110..1303 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:14:07 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1194 110..1303 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 1..1194 110..1303 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:59 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1194 110..1303 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:32 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RD 1..1194 110..1303 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:46:00 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1494 1..1493 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:14:07 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1494 1..1493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:06 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 5..1498 1..1493 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:59 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 1..1494 1..1493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:32 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
CG1354-RA 5..1498 1..1493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:05 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
X 9779052..9779246 100..294 98 -> Plus
X 9780245..9780301 295..351 100 -> Plus
X 9778746..9778799 1..53 96 -> Plus
X 9778868..9778913 54..99 97 -> Plus
X 9780511..9780892 352..733 100 -> Plus
X 9781159..9781918 734..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:05 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
X 9779052..9779246 100..294 98 -> Plus
X 9780245..9780301 295..351 100 -> Plus
X 9778746..9778799 1..53 96 -> Plus
X 9778868..9778913 54..99 97 -> Plus
X 9780511..9780892 352..733 100 -> Plus
X 9781159..9781918 734..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:05 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
X 9779052..9779246 100..294 98 -> Plus
X 9780245..9780301 295..351 100 -> Plus
X 9778746..9778799 1..53 96 -> Plus
X 9778868..9778913 54..99 97 -> Plus
X 9780511..9780892 352..733 100 -> Plus
X 9781159..9781918 734..1493 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:06 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9672779..9672832 1..53 96 -> Plus
arm_X 9672901..9672946 54..99 97 -> Plus
arm_X 9673085..9673279 100..294 98 -> Plus
arm_X 9674278..9674334 295..351 100 -> Plus
arm_X 9674544..9674925 352..733 100 -> Plus
arm_X 9675192..9675951 734..1493 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:26 Download gff for RE21802.complete
Subject Subject Range Query Range Percent Splice Strand
X 9788609..9788990 352..733 100 -> Plus
X 9789257..9790016 734..1493 100   Plus
X 9786844..9786897 1..53 96 -> Plus
X 9786966..9787011 54..99 97 -> Plus
X 9787150..9787344 100..294 98 -> Plus
X 9788343..9788399 295..351 100 -> Plus

RE21802.pep Sequence

Translation from 109 to 1302

> RE21802.pep
MPPKKHDEPERKPLIGRIGTNLRIGIVGVPNVGKSTFFNVLTQSAAPAEN
FPFCTIKPNESRVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAA
EGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISEE
LRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHLR
FEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWID
KNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKG
LQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFED
FKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKK*

RE21802.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25119-PA 397 GF25119-PA 1..397 1..397 2001 94.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18324-PA 397 GG18324-PA 1..397 1..397 2098 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11803-PA 397 GH11803-PA 1..397 1..397 1988 93.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PE 397 CG1354-PE 1..397 1..397 2086 100 Plus
CG1354-PA 397 CG1354-PA 1..397 1..397 2086 100 Plus
CG1354-PD 397 CG1354-PD 1..397 1..397 2086 100 Plus
CG1354-PC 397 CG1354-PC 1..397 1..397 2086 100 Plus
CG1354-PB 348 CG1354-PB 13..348 62..397 1761 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15984-PA 397 GI15984-PA 1..397 1..397 2023 95.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16374-PA 397 GL16374-PA 1..397 1..397 2011 94.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12352-PA 397 GA12352-PA 1..397 1..397 2031 95.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11387-PA 397 GM11387-PA 1..397 1..397 2099 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24779-PA 383 GD24779-PA 1..378 1..378 2005 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18714-PA 397 GJ18714-PA 1..397 1..397 2011 95 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25358-PA 397 GK25358-PA 1..397 1..397 2011 94.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17809-PA 432 GE17809-PA 1..432 1..397 2051 91.2 Plus

RE21802.hyp Sequence

Translation from 109 to 1302

> RE21802.hyp
MPPKKHDEPERKPLIGRIGTNLRIGIVGVPNVGKSTFFNVLTQSAAPAEN
FPFCTIKPNENNVPVPDERFDYLVEYHKPASVVPAYLNVVDIAGLVKGAA
EGQGLGNDFLSHISACDAIFHLCRAFEDPDVTHVEGEVDPVRDLEIISEE
LRLKDEENLLKNLDKLEKVVARGGDKKLKPEYDSMLKIKDILIDQKRHLR
FEDWNAHDIEALNKYLFLTSKPVIYLVNLSDKDFIRKKNKWLPKIKEWID
KNDPGALLIPFSGAFEHQLTEKDELERKAYETETKCKSMLEKIVVTGYKG
LQLEYFFTAGPDEVKAWTIQKGTKAPQAAGRIHTDFEKGFIMAEVMHFED
FKAEGSEANAKAAGKYRQQGRNYTVEDGDIIFFKFNAGAGLKDAKKK*

RE21802.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-PE 397 CG1354-PE 1..397 1..397 2078 99.5 Plus
CG1354-PA 397 CG1354-PA 1..397 1..397 2078 99.5 Plus
CG1354-PD 397 CG1354-PD 1..397 1..397 2078 99.5 Plus
CG1354-PC 397 CG1354-PC 1..397 1..397 2078 99.5 Plus
CG1354-PB 348 CG1354-PB 14..348 63..397 1756 100 Plus