Clone RE22192 Report

Search the DGRC for RE22192

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:221
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG7016-RA
Protein status:RE22192.pep: gold
Sequenced Size:1305

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7016 2002-01-01 Sim4 clustering to Release 2
CG7016 2002-03-28 Blastp of sequenced clone
CG7016 2003-01-01 Sim4 clustering to Release 3
CG7016 2008-04-29 Release 5.5 accounting
CG7016 2008-08-15 Release 5.9 accounting
CG7016 2008-12-18 5.12 accounting

Clone Sequence Records

RE22192.complete Sequence

1305 bp (1305 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094861

> RE22192.complete
TCAGTTAGAGTCCGCCTTTTGTGGTGATCACTGCTCGAACACCCGAACAT
GACGCGATCTTCGCCAGCTTGGTGTGCTGGCCAGGCCTGGCTCGTCTGGC
TTTTGGCATCCATCTGGATACGCACGTGTCTCGCGCAATTTGCAGTCTCC
TCGTCCTCCGCCGGCGGAGCTGTTGCCTCCGCCGGTGGCGTCACTGTGGT
GGCCCAGCTGCCCGGTTTCGGAGTTATCAATGGACTGATCAATGCCATGC
ACAACAACAACCGCTTCAACCAGCAGCCGCAGTTCGAGAGACTGCAGCAA
GGAAGGCCGGGGATGGGTCCGAATCGAGGAGGAATGCACAGACCAGGATT
TGCACCACCCAACCGTCAGCAACCGACGCCTCCTGGCTGGCCACCCGGCT
GGCAGTGGGGAGCCGGTGGAAATCAGAATCAACCCGGATTTGACTGGGTT
CAAACAGGATTTGCACCAGGCTGGAATGGAGGTGGAGGGCAAGGACCAGG
ATGGAATGGTCCAGGATGGAACGGAGGCGGTGGAAGAGGACCTCCACCAA
GACCAGGTTTTAACGGCGGCGGACCACCGCCGCCAAGACCAGGATGGAAC
GGCGGCGGGCCACCACCACCGATGCCAGGCTGGAATGGAGGAGGGCCACC
GCCACCAAGGCCAGGATGGAATGGCGGAGGACCTCCGCCACCAAGGCCAG
GCTGGAATGGAGGGATGGAACAGGAATGGGATAACTATCCACGCCTCCCC
GATCAGCCGGATCCCAATGATCCAAACACGAATTGGAATCCAGATAATGA
GTCTAGCACCACTCCACAAACGCCAATACCAGGACCCATCTTTCCAACGA
CAACACCTAAGCCAGAGCCCACCTTTCCCACGATCCAGCCACGTCCAACC
GCTCAGCCAACGAAGGATACGCTCATAATAGGAACCAATCGACCGCCGTT
GGTGCCGCCCCATAATCCGGATCCACCCACGCCCACTTTTCCCACTTGGA
TCGTGCCGGAGCCATTGCCAAAACCATTGGACGAACTCTCCGAAAATCGT
GCTATTATATTCCCCAGCTCTAGCAAATATATCCATGTGCCAAACCCGGA
GGTTCCCTCAATTCCCATTGATGTGAGACGAAGATGAATCTTCTAAGAGG
GAGTTCCCCGATTCACACTTGTTGTATATATATTCGTAGACCATTGTTCA
ATTGCTCCACCCGAGATCGTCTTTGTCATAAGTTCAAAACAGGTTCTAAA
AGCTCGTTGGAAATAAACGAAATTTTAATAAATTAAAAAACAAAAAAAAA
AAAAA

RE22192.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-RA 1285 CG7016-RA 2..1285 1..1284 6420 100 Plus
CG13641-RA 687 CG13641-RA 564..687 1285..1162 620 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20686119..20687403 1..1285 6425 100 Plus
chr3R 27901430 chr3R 20686694..20686828 540..674 330 83 Plus
chr3R 27901430 chr3R 20686658..20686792 576..710 330 83 Plus
chr3R 27901430 chr3R 20686658..20686759 612..713 210 80.4 Plus
chr3R 27901430 chr3R 20686730..20686831 540..641 210 80.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24862933..24864217 1..1285 6425 100 Plus
3R 32079331 3R 24863472..24863606 576..710 330 83 Plus
3R 32079331 3R 24863508..24863642 540..674 330 83 Plus
3R 32079331 3R 24863472..24863573 612..713 210 80.4 Plus
3R 32079331 3R 24863544..24863645 540..641 210 80.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24603764..24605048 1..1285 6425 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:06:07 has no hits.

RE22192.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:07:08 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20686119..20687412 1..1291 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:16 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 49..1137 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:44 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 49..1137 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:15 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 49..1137 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:56 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 49..1137 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:55 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 1..1089 49..1137 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:36 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 2..1285 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:44 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 2..1285 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:15 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 3..1286 1..1284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:56 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 2..1285 1..1284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:55 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
CG7016-RA 3..1286 1..1284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:08 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24862933..24864226 1..1291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:08 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24862933..24864226 1..1291 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:07:08 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24862933..24864226 1..1291 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:15 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20688655..20689948 1..1291 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:53 Download gff for RE22192.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24603764..24605057 1..1291 99   Plus

RE22192.hyp Sequence

Translation from 48 to 1136

> RE22192.hyp
MTRSSPAWCAGQAWLVWLLASIWIRTCLAQFAVSSSSAGGAVASAGGVTV
VAQLPGFGVINGLINAMHNNNRFNQQPQFERLQQGRPGMGPNRGGMHRPG
FAPPNRQQPTPPGWPPGWQWGAGGNQNQPGFDWVQTGFAPGWNGGGGQGP
GWNGPGWNGGGGRGPPPRPGFNGGGPPPPRPGWNGGGPPPPMPGWNGGGP
PPPRPGWNGGGPPPPRPGWNGGMEQEWDNYPRLPDQPDPNDPNTNWNPDN
ESSTTPQTPIPGPIFPTTTPKPEPTFPTIQPRPTAQPTKDTLIIGTNRPP
LVPPHNPDPPTPTFPTWIVPEPLPKPLDELSENRAIIFPSSSKYIHVPNP
EVPSIPIDVRRR*

RE22192.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-PA 362 CG7016-PA 1..362 1..362 2129 100 Plus
CG9425-PD 2103 CG9425-PD 1292..1520 83..322 217 31.9 Plus
CG9425-PC 2103 CG9425-PC 1292..1520 83..322 217 31.9 Plus
CG9425-PB 2103 CG9425-PB 1292..1520 83..322 217 31.9 Plus
CG15021-PA 420 CG15021-PA 117..371 91..326 207 31.7 Plus

RE22192.pep Sequence

Translation from 48 to 1136

> RE22192.pep
MTRSSPAWCAGQAWLVWLLASIWIRTCLAQFAVSSSSAGGAVASAGGVTV
VAQLPGFGVINGLINAMHNNNRFNQQPQFERLQQGRPGMGPNRGGMHRPG
FAPPNRQQPTPPGWPPGWQWGAGGNQNQPGFDWVQTGFAPGWNGGGGQGP
GWNGPGWNGGGGRGPPPRPGFNGGGPPPPRPGWNGGGPPPPMPGWNGGGP
PPPRPGWNGGGPPPPRPGWNGGMEQEWDNYPRLPDQPDPNDPNTNWNPDN
ESSTTPQTPIPGPIFPTTTPKPEPTFPTIQPRPTAQPTKDTLIIGTNRPP
LVPPHNPDPPTPTFPTWIVPEPLPKPLDELSENRAIIFPSSSKYIHVPNP
EVPSIPIDVRRR*

RE22192.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16998-PA 340 GF16998-PA 1..130 1..135 227 56.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11328-PA 370 GG11328-PA 1..370 1..360 916 79.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7016-PA 362 CG7016-PA 1..362 1..362 2129 100 Plus
CG9425-PD 2103 CG9425-PD 1292..1520 83..322 217 31.9 Plus
CG9425-PC 2103 CG9425-PC 1292..1520 83..322 217 31.9 Plus
CG9425-PB 2103 CG9425-PB 1292..1520 83..322 217 31.9 Plus
CG15021-PA 420 CG15021-PA 117..371 91..326 207 31.7 Plus
CG15021-PA 420 CG15021-PA 31..248 123..326 200 31.9 Plus
dia-PE 1091 CG1768-PE 518..609 155..250 197 46.1 Plus
dia-PB 1091 CG1768-PB 518..609 155..250 197 46.1 Plus
dia-PA 1091 CG1768-PA 518..609 155..250 197 46.1 Plus
dia-PD 1098 CG1768-PD 525..616 155..250 197 46.1 Plus
ena-PG 664 CG15112-PG 288..466 46..226 193 34.6 Plus
ena-PE 684 CG15112-PE 308..486 46..226 193 34.6 Plus
ena-PC 684 CG15112-PC 308..486 46..226 193 34.6 Plus
ena-PA 684 CG15112-PA 308..486 46..226 193 34.6 Plus
ena-PD 687 CG15112-PD 311..489 46..226 193 34.6 Plus
frm-PJ 752 CG10625-PJ 85..325 109..359 193 32.2 Plus
frm-PI 766 CG10625-PI 85..325 109..359 193 32.2 Plus
ena-PB 834 CG15112-PB 457..635 46..226 193 34.6 Plus
ena-PF 980 CG15112-PF 604..782 46..226 193 34.6 Plus
frm-PH 1180 CG10625-PH 499..739 109..359 193 32.2 Plus
CG15021-PA 420 CG15021-PA 54..237 88..326 191 28 Plus
osa-PE 2555 CG7467-PE 156..419 87..322 190 29.3 Plus
osa-PC 2556 CG7467-PC 156..419 87..322 190 29.3 Plus
osa-PF 2559 CG7467-PF 156..419 87..322 190 29.3 Plus
osa-PA 2703 CG7467-PA 156..419 87..322 190 29.3 Plus
osa-PB 2716 CG7467-PB 156..419 87..322 190 29.3 Plus
osa-PD 2716 CG7467-PD 156..419 87..322 190 29.3 Plus
frm-PJ 752 CG10625-PJ 102..396 88..326 182 33.3 Plus
frm-PI 766 CG10625-PI 102..396 88..326 182 33.3 Plus
frm-PH 1180 CG10625-PH 516..810 88..326 182 33.3 Plus
frm-PE 652 CG10625-PE 414..644 39..307 182 30.5 Plus
CG10555-PB 926 CG10555-PB 420..717 74..312 179 27.5 Plus
CG10555-PA 926 CG10555-PA 420..717 74..312 179 27.5 Plus
CG15021-PA 420 CG15021-PA 44..192 150..327 178 34.4 Plus
Rb97D-PI 471 CG6354-PI 212..459 62..352 176 28.3 Plus
Rb97D-PF 471 CG6354-PF 212..459 62..352 176 28.3 Plus
Rb97D-PB 471 CG6354-PB 212..459 62..352 176 28.3 Plus
Rb97D-PH 471 CG6354-PH 212..459 62..352 176 28.3 Plus
CG15021-PA 420 CG15021-PA 165..411 99..344 175 28.7 Plus
frm-PD 268 CG10625-PD 85..260 109..307 175 33.2 Plus
frm-PA 268 CG10625-PA 85..260 109..307 175 33.2 Plus
frm-PB 682 CG10625-PB 499..674 109..307 175 33.2 Plus
frm-PC 682 CG10625-PC 499..674 109..307 175 33.2 Plus
CG9411-PA 993 CG9411-PA 431..628 161..326 174 30.2 Plus
BOD1-PC 1109 CG5514-PC 358..480 200..328 173 35.6 Plus
BOD1-PA 1109 CG5514-PA 358..480 200..328 173 35.6 Plus
BOD1-PD 1150 CG5514-PD 358..480 200..328 173 35.6 Plus
BOD1-PB 1150 CG5514-PB 358..480 200..328 173 35.6 Plus
BOD1-PE 1151 CG5514-PE 358..480 200..328 173 35.6 Plus
Rb97D-PG 465 CG6354-PG 212..453 62..352 169 28.5 Plus
Rb97D-PC 465 CG6354-PC 212..453 62..352 169 28.5 Plus
Rb97D-PA 465 CG6354-PA 212..453 62..352 169 28.5 Plus
BOD1-PC 1109 CG5514-PC 359..489 165..326 168 31.5 Plus
BOD1-PA 1109 CG5514-PA 359..489 165..326 168 31.5 Plus
BOD1-PD 1150 CG5514-PD 359..489 165..326 168 31.5 Plus
BOD1-PB 1150 CG5514-PB 359..489 165..326 168 31.5 Plus
BOD1-PE 1151 CG5514-PE 359..489 165..326 168 31.5 Plus
BG642163-PB 415 CG34102-PB 136..335 99..311 168 28.1 Plus
BG642163-PA 415 CG34102-PA 136..335 99..311 168 28.1 Plus
capu-PG 932 CG3399-PG 376..539 165..332 168 32.8 Plus
capu-PB 1049 CG3399-PB 493..656 165..332 168 32.8 Plus
capu-PA 1059 CG3399-PA 503..666 165..332 168 32.8 Plus
capu-PJ 1089 CG3399-PJ 533..696 165..332 168 32.8 Plus
dia-PE 1091 CG1768-PE 519..584 145..203 164 54.5 Plus
dia-PB 1091 CG1768-PB 519..584 145..203 164 54.5 Plus
dia-PA 1091 CG1768-PA 519..584 145..203 164 54.5 Plus
dia-PD 1098 CG1768-PD 526..591 145..203 164 54.5 Plus
ena-PG 664 CG15112-PG 317..476 99..264 162 35.2 Plus
ena-PE 684 CG15112-PE 337..496 99..264 162 35.2 Plus
ena-PC 684 CG15112-PC 337..496 99..264 162 35.2 Plus
ena-PA 684 CG15112-PA 337..496 99..264 162 35.2 Plus
ena-PD 687 CG15112-PD 340..499 99..264 162 35.2 Plus
ena-PB 834 CG15112-PB 486..645 99..264 162 35.2 Plus
ena-PF 980 CG15112-PF 633..792 99..264 162 35.2 Plus
dia-PE 1091 CG1768-PE 496..585 158..274 158 38.7 Plus
dia-PB 1091 CG1768-PB 496..585 158..274 158 38.7 Plus
dia-PA 1091 CG1768-PA 496..585 158..274 158 38.7 Plus
dia-PD 1098 CG1768-PD 503..592 158..274 158 38.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10570-PA 418 GI10570-PA 185..417 140..362 152 39 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13938-PA 367 GL13938-PA 248..367 241..361 170 51.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20034-PA 362 GA20034-PA 178..362 165..361 206 47.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26637-PA 364 GM26637-PA 1..145 1..145 553 93.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21140-PA 262 GD21140-PA 1..35 1..35 183 91.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23524-PA 367 GE23524-PA 1..141 1..136 419 77.3 Plus