Clone RE22286 Report

Search the DGRC for RE22286

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:222
Well:86
Vector:pFlc-1
Associated Gene/TranscriptPex14-RA
Protein status:RE22286.pep: gold
Preliminary Size:1176
Sequenced Size:1269

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4289 2002-01-01 Sim4 clustering to Release 2
CG4289 2002-02-22 Blastp of sequenced clone
CG4289 2003-01-01 Sim4 clustering to Release 3
CG4289 2008-04-29 Release 5.5 accounting
CG4289 2008-08-15 Release 5.9 accounting
CG4289 2008-12-18 5.12 accounting

Clone Sequence Records

RE22286.complete Sequence

1269 bp (1269 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089608

> RE22286.complete
AGTAATTTCGAGAGCAGCAAAGTCTTTGGTCACACTTTTGTTTTTGTGCA
CTTTGTAATCGAATTGCTCGTGAATTCGGATTCACTCCGTTTTCGTGTGT
ATTAGCTAGGCAAGATTGAATTAAGAGTCGATATACAGATGTCCAGCAAC
AACACGGACACTGGGGACACCACCGTCATGGCGACGGCTACCTCGGTGCA
GAACGATGTCGAGGCCGGCGTAGATGAGCAATTGCCTCGAGAATCGCTGA
TAACCACTGCAGTCAGTTTTCTACAAAACACCAAGGTGCGCCACACGACA
CTTATCCAGAAGCAGCAGTTCCTACGGTCCAAAGGTCTCACCGCTCACGA
AATTCAGCTGGCCTGTGAACGGGCCGGCGTTTTCACCCAAGACCCCAACA
AGCCCAATCCGAATCCGAACACCGTCATTAGCATTGGATCCCAATTGCAC
GCGCTGCAGCCGCAGCCGACTGTCTTGGGCCGGATCAGGGAAATCATCCA
TTCGGCAGCCCTGTTCAGCGGAGTCGTCTACGCAGTCTACATCTTCTGGA
AGCAATACATTGCGCCCTACCTGTTCGGCAAGTCCAAGAAGAAGGCGGTC
GATGAAGTCCTGGACGACATAGACAAGAAGGTAGAGACCCGCACCAACGA
CCTCAACAAGGAGATTTTGGCGGTCAGGGATCTGATCACCACACAGCAAA
GGGAACACGCCCAGCAGCTGAACCGCGAATTTAGTAACTTCCGTAGCGAT
CTGGATGCCATTAAGGGCCTGCTTTTGAACCGAAAACAGTTCGCCGGCCC
TGTGGCTCCGATCGCAGTGCCATCCATTCCCGCCTGGCAATTGGCCGGCT
CACCGCATCACCATCACCGGCACAGCGGGTCGGACGACAACGAGAAGGGC
GATGATGCTGGATCCGGGTCTGGCTCGTCGGAGACAGAGGTGGTCACCAA
GAATAGTGACTCCAGCTTGGAGATCATGTAATGCAATCAGAATACGAGGC
TGGCTATATAGACGTAGTATATAGTTACGCTGTAAATTGAGTTTCCCCGT
TAAATGCCTTCAAGACTTTTGGTTTTTTTTCTTTGCGTTTATAGCATTTA
AGGTTTCTTTATAGTCAACAGCTAATCCATATCCAAAAGTACATACACAC
ACTCACATATACACACTTATGCGATACGATGTCTATACAATGTAATAATA
AAAAGTTTACATAATAACAGGTTTGAATTGAAAGAAACTGTTTAATTAAG
CCCAAAAAAAAAAAAAAAA

RE22286.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4289-RA 1358 CG4289-RA 98..1355 1..1258 6275 99.9 Plus
CG11399-RB 4441 CG11399-RB 4280..4441 1258..1097 795 99.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20768696..20769396 551..1251 3505 100 Plus
chr3L 24539361 chr3L 20768118..20768425 245..552 1510 99.4 Plus
chr3L 24539361 chr3L 20767815..20768067 1..253 1250 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20779676..20780383 551..1258 3525 99.9 Plus
3L 28110227 3L 20779098..20779405 245..552 1525 99.7 Plus
3L 28110227 3L 20778795..20779047 1..253 1250 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20772776..20773483 551..1258 3525 99.8 Plus
3L 28103327 3L 20772198..20772505 245..552 1525 99.6 Plus
3L 28103327 3L 20771895..20772147 1..253 1250 99.6 Plus
Blast to na_te.dros performed 2019-03-16 03:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 3639..3740 1134..1235 121 62.5 Plus

RE22286.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:09 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20767815..20768063 1..249 100 -> Plus
chr3L 20768123..20768425 250..552 99 -> Plus
chr3L 20768698..20769398 553..1253 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:22 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..843 139..981 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:39:00 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..843 139..981 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:34 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 1..843 139..981 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:11 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..843 139..981 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:33:56 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 1..843 139..981 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:04:05 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..1253 1..1253 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:39:00 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..1253 1..1253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:34 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 1..1249 5..1253 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:11 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
CG4289-RA 1..1253 1..1253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:33:56 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
Pex14-RA 1..1249 5..1253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:09 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778795..20779043 1..249 100 -> Plus
3L 20779103..20779405 250..552 100 -> Plus
3L 20779678..20780378 553..1253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:09 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778795..20779043 1..249 100 -> Plus
3L 20779103..20779405 250..552 100 -> Plus
3L 20779678..20780378 553..1253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:09 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20778795..20779043 1..249 100 -> Plus
3L 20779103..20779405 250..552 100 -> Plus
3L 20779678..20780378 553..1253 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:34 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20771895..20772143 1..249 100 -> Plus
arm_3L 20772203..20772505 250..552 100 -> Plus
arm_3L 20772778..20773478 553..1253 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:43:20 Download gff for RE22286.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20771895..20772143 1..249 100 -> Plus
3L 20772203..20772505 250..552 100 -> Plus
3L 20772778..20773478 553..1253 99   Plus

RE22286.hyp Sequence

Translation from 138 to 980

> RE22286.hyp
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIM*

RE22286.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-PA 280 CG4289-PA 1..280 1..280 1432 100 Plus

RE22286.pep Sequence

Translation from 138 to 980

> RE22286.pep
MSSNNTDTGDTTVMATATSVQNDVEAGVDEQLPRESLITTAVSFLQNTKV
RHTTLIQKQQFLRSKGLTAHEIQLACERAGVFTQDPNKPNPNPNTVISIG
SQLHALQPQPTVLGRIREIIHSAALFSGVVYAVYIFWKQYIAPYLFGKSK
KKAVDEVLDDIDKKVETRTNDLNKEILAVRDLITTQQREHAQQLNREFSN
FRSDLDAIKGLLLNRKQFAGPVAPIAVPSIPAWQLAGSPHHHHRHSGSDD
NEKGDDAGSGSGSSETEVVTKNSDSSLEIM*

RE22286.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10360-PA 281 GF10360-PA 1..281 1..280 1267 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16136-PA 280 GG16136-PA 1..280 1..280 1391 92.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14592-PA 280 GH14592-PA 1..280 1..280 1080 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
Pex14-PA 280 CG4289-PA 1..280 1..280 1432 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13414-PA 280 GI13414-PA 27..280 22..280 1028 76.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12812-PA 246 GL12812-PA 1..246 1..280 974 72.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18085-PA 278 GA18085-PA 1..278 1..280 1180 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22319-PA 280 GM22319-PA 1..280 1..280 1425 95.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14907-PA 280 GD14907-PA 1..280 1..280 1449 96.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11539-PA 280 GJ11539-PA 1..280 1..280 1118 76.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24516-PA 283 GK24516-PA 1..283 1..280 1072 74.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19703-PA 280 GE19703-PA 1..280 1..280 1363 94.3 Plus