BDGP Sequence Production Resources |
Search the DGRC for RE22390
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 223 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | l(1)10Bb-RA |
Protein status: | RE22390.pep: gold |
Preliminary Size: | 914 |
Sequenced Size: | 904 |
Gene | Date | Evidence |
---|---|---|
CG1639 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1639 | 2002-06-04 | Blastp of sequenced clone |
CG1639 | 2003-01-01 | Sim4 clustering to Release 3 |
l(1)10Bb | 2008-04-29 | Release 5.5 accounting |
l(1)10Bb | 2008-08-15 | Release 5.9 accounting |
l(1)10Bb | 2008-12-18 | 5.12 accounting |
904 bp (904 high quality bases) assembled on 2002-06-04
GenBank Submission: AY118623
> RE22390.complete AAAAGTGTCATCGCTAAGTAGCCAGCTGTTTGTGAAATGTTTGTTTTTCA AGCAAAATTAAGCATTTTTAAGAGAAATTAAACAGTTTTACAGTTAAATA AATTGAACATTTAAGATGCCCAAGGTTCGCCGCAGTCGCAAACCACCGCC AGACGGTTGGGAGCTGATCGAACCAACTCTCGAGGAACTGGAGCAAAAAA TGCGCGAAGCCGAAACGGAACCGCACGAGGGCAAACGCATTACGGAATCC CTTTGGCCCATTTTCAAGATCCACCACCAGAAGACACGATACATCTACGA TCTATTCTATCGCCGGAAAGCCATCAGCCGGGAATTGTACGACTACTGTC TGAAGGAGAAGATTGCCGATGGCAATCTGATTGCCAAGTGGAAGAAGTCT GGATACGAGAACCTATGCTGCCTGCGCTGCATTCAAACGAGGGACACCAA TTTCGGCACGAACTGCATATGCCGGGTGCCCAAATGCAAACTGGAAGAGG GTCGGATCGTTGAGTGTGTCCACTGCGGTTGTCGCGGCTGCTCCGGTTAG ATTCCATGTGGACGCATTATTGGCATCTTTATTCGACACAAATAATCCTC ATAATACATAGTTCAGTAGGTTCAACTTTAGATTTCGCCTGATTTCTTCA TAGTATGTAAATACATTTAAATACAAGCCACAATTATGGTTAATGGCATG CTAAACATCTAAATAGATGCTGCAATAAACCGATTATGTAAACGACAAGG CATCGTTGGGAAATGCGTTCCGATTTGTTTAAAAAAAAATGTAGAAATGG TATGAGCAGACATTTTTGTATTAGAATGTATAGAAAAGATAGAAATTAAC TTGTAGTTTAATCAAATAAATAGAGATTATAATTTATGAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)10Bb-RA | 1012 | l(1)10Bb-RA | 50..940 | 2..892 | 4440 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 11216249..11216458 | 1..209 | 98 | Minus | |
chrX | 11215514..11216167 | 210..863 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..435 | 116..550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..435 | 116..550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..435 | 116..550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..435 | 116..550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..435 | 116..550 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..887 | 2..888 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..887 | 2..888 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 9..896 | 1..888 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 1..887 | 2..888 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(1)10Bb-RA | 9..896 | 1..888 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11324332..11325010 | 210..888 | 99 | <- | Minus |
X | 11325092..11325299 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11324332..11325010 | 210..888 | 99 | <- | Minus |
X | 11325092..11325299 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11324332..11325010 | 210..888 | 99 | <- | Minus |
X | 11325092..11325299 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 11218365..11219043 | 210..888 | 99 | <- | Minus |
arm_X | 11219125..11219332 | 1..209 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 11332430..11333108 | 210..888 | 99 | <- | Minus |
X | 11333190..11333397 | 1..209 | 99 | Minus |
Translation from 115 to 549
> RE22390.pep MPKVRRSRKPPPDGWELIEPTLEELEQKMREAETEPHEGKRITESLWPIF KIHHQKTRYIYDLFYRRKAISRELYDYCLKEKIADGNLIAKWKKSGYENL CCLRCIQTRDTNFGTNCICRVPKCKLEEGRIVECVHCGCRGCSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22353-PA | 433 | GF22353-PA | 1..144 | 1..144 | 777 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18863-PA | 144 | GG18863-PA | 1..144 | 1..144 | 753 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12222-PA | 144 | GH12222-PA | 1..144 | 1..144 | 746 | 97.2 | Plus |
Dgri\GH22904-PA | 144 | GH22904-PA | 1..144 | 1..144 | 744 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)10Bb-PA | 144 | CG1639-PA | 1..144 | 1..144 | 808 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18389-PA | 144 | GI18389-PA | 1..144 | 1..144 | 745 | 97.9 | Plus |
Dmoj\GI15753-PA | 144 | GI15753-PA | 1..144 | 1..144 | 745 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13722-PA | 144 | GL13722-PA | 1..144 | 1..144 | 740 | 96.5 | Plus |
Dper\GL20292-PA | 63 | GL20292-PA | 13..63 | 32..91 | 197 | 68.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27004-PA | 144 | GA27004-PA | 1..144 | 1..144 | 740 | 96.5 | Plus |
Dpse\GA28695-PA | 53 | GA28695-PA | 3..53 | 12..71 | 188 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11248-PA | 144 | GM11248-PA | 1..144 | 1..144 | 758 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15995-PA | 144 | GD15995-PA | 1..144 | 1..144 | 758 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21466-PA | 144 | GJ21466-PA | 1..144 | 1..144 | 753 | 99.3 | Plus |
Dvir\GJ18612-PA | 144 | GJ18612-PA | 1..144 | 1..144 | 744 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16514-PA | 144 | GK16514-PA | 1..144 | 1..144 | 748 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17304-PA | 144 | GE17304-PA | 1..144 | 1..144 | 753 | 99.3 | Plus |
Translation from 115 to 549
> RE22390.hyp MPKVRRSRKPPPDGWELIEPTLEELEQKMREAETEPHEGKRITESLWPIF KIHHQKTRYIYDLFYRRKAISRELYDYCLKEKIADGNLIAKWKKSGYENL CCLRCIQTRDTNFGTNCICRVPKCKLEEGRIVECVHCGCRGCSG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(1)10Bb-PA | 144 | CG1639-PA | 1..144 | 1..144 | 808 | 100 | Plus |