Clone RE22570 Report

Search the DGRC for RE22570

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:225
Well:70
Vector:pFlc-1
Associated Gene/TranscriptCG40191-RB
Protein status:RE22570.pep: gold
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40191 2004-10-13 Blastp of sequenced clone
CG40191 2008-04-29 Release 5.5 accounting
CG40191 2008-08-15 Release 5.9 accounting
CG40191 2008-12-18 5.12 accounting

Clone Sequence Records

RE22570.complete Sequence

1590 bp (1590 high quality bases) assembled on 2004-10-13

GenBank Submission: BT016014

> RE22570.complete
ATTGGTTTTTTTTATAGGACTAAATAGTTTTATTTTCGCATATTTCAGTT
ATTTATTTAGAAATGGGGCGATTTAAGTTATGTGCTTCGCCGAGAGAGGT
ATTTAAAAAGTTTTCACGAATATATGTATTAGCAAATTTTTTAAATTTCC
AGGTTATGAAGTACGAAGACTTTATAAAACGCATTCGAAAAAGCCTCTAC
TATGGCGTTGGAACACCAGACACAGAAATGTCGGTCTCCTTACCCTTTGC
GGAGTACGCGGCAGATTTGTTTTCGGAGACTCATCGCGGGCATTCTTTGC
ATCGCCTAAGTTGCGTATCTGCTGCACAAGTACATGCCACGCCTTGCTCT
TTAATTATGGCATTGATATACCTCGATCGCTTAAACGTCATCGACTCGGG
CTATAGCTGCAGAATCACACCACAGCAGCTGTTTGTTGTGTCACTAATGA
TTTCCACAAAATTCTACGCGGGCCACGACGAACGGTTCTATCTGGAAGAC
TGGGCCAGTGACGCTTGTATGACGGAAGATAGGCTCAAGGCAGTCGAGCT
CGAATTTCTTTCCGCTATGGGTTGGAATATATACATATCCAATGAGCTAT
TCTTTGATAAGTTAAGAAACGTTGAACGTTCTTTGGCTGAACAGCAGGGA
CTGCGTAGAGGTTGGCTCACTTACAGTGAGCTCGTGCAGTTGCTGCCTAG
CCTTGAATGGACGAAATTCCTCGTTAACAGCCTGTCTGTACTATCTCTAA
GCTATGCGGCAAGTATTATAACATTAGCCGGAGCTTTTTTTATTGCGAGC
CAAGTTCCCGGTACGTTATGGCATCGGGATGTGGAAACTGCCTCAGATTT
CACCATGACAATTAGCAGTCAGGTATCCGTTTCAAATGCATTAGAGTCCA
CACCTTTTATTAATGTCCAAGTATCCTCACTTTTACGTAAAACGAGTAAC
GTGAATGTTGAATTGATGAATCTTGAGAAGACAAGCTGCGCCAGGGCAAG
ACTGAATAAAATTGAATATAAGCATCCGCGCCATCAATCAGTACCTACGC
TTTCATTCATAAGCACCTGTCCACAACTTGATTTATTGTATGCCCAAGAT
GGAACAAGGAATTGGCTAAATATTAAATCGCCCAACAGCGACTACAAAAA
CAACAGAAACCTTTCAATAACAGTTAGATCCGTACAACTAGAAGAGCAAA
AGGCTGAAAATGATTCCGTTATTTGGCAAGCCAACACCGAAGCAATGCAG
TAATTGTTTTTACCGCAAAACTTAAAGAGGTGCTAACAACTGATATAAAA
TAAATATATTTATATTATATATAATATCAATATAATAATATTGATAACAA
ATTAACCAAGCGTACGAGTAATATAACATGCATAACAGTAATACGAAACT
GCTTTTATTTCTTCACAGAACTAATGTTCGCTGGCTTAATCAAACTGTCA
TAAAAACTATAATAGCACATTATTATATGTGCCTAGAGGTGGATACTTTG
GATGCTAAACTAAAATGAACAAAATAAGTTAGATTGTTCTATATTATATT
AAAATAAAATGTTTCTGTTGCTCCAAAAAAAAAAAAAAAA

RE22570.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-RB 1640 CG40191-RB 13..1582 4..1573 7850 100 Plus
CG40191.f 1836 CG40191.f 13..1582 4..1573 7850 100 Plus
CG40191-RA 1636 CG40191-RA 120..1542 151..1573 7115 100 Plus
CG40191-RA 1636 CG40191-RA 27..123 4..100 485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2RHet 3288813 chr2RHet 392020..393024 569..1573 5025 100 Plus
chr2RHet 3288813 chr2RHet 391077..391519 4..446 2215 100 Plus
chr2RHet 3288813 chr2RHet 391849..391972 447..570 620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 1265342..1266346 569..1573 5025 100 Plus
2R 25286936 2R 1264399..1264841 4..446 2215 100 Plus
2R 25286936 2R 1265171..1265294 447..570 620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 1265342..1266346 569..1573 5025 100 Plus
2R 25260384 2R 1264399..1264841 4..446 2215 100 Plus
2R 25260384 2R 1265171..1265294 447..570 620 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:13:40 has no hits.

RE22570.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:23 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
chr2RHet 391074..391519 1..446 99 -> Plus
chr2RHet 391849..391971 447..569 100 -> Plus
chr2RHet 392021..393024 570..1574 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:35 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 63..1253 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:22 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 63..1253 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:40 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 63..1253 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:17 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 63..1253 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:21 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1191 63..1253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:45 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1573 1..1574 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:22 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 24..1596 1..1574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:40 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 4..1576 1..1574 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:17 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 1..1573 1..1574 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:21 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
CG40191-RB 4..1576 1..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:23 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264396..1264841 1..446 99 -> Plus
2R 1265171..1265293 447..569 100 -> Plus
2R 1265343..1266346 570..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:23 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264396..1264841 1..446 99 -> Plus
2R 1265171..1265293 447..569 100 -> Plus
2R 1265343..1266346 570..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:23 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1264396..1264841 1..446 99 -> Plus
2R 1265171..1265293 447..569 100 -> Plus
2R 1265343..1266346 570..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:40 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 391029..391474 1..446 99 -> Plus
2RHet 391804..391926 447..569 100 -> Plus
2RHet 391976..392979 570..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:51:04 Download gff for RE22570.complete
Subject Subject Range Query Range Percent Splice Strand
2R 1265171..1265293 447..569 100 -> Plus
2R 1264396..1264841 1..446 99 -> Plus
2R 1265343..1266346 570..1574 99   Plus

RE22570.pep Sequence

Translation from 62 to 1252

> RE22570.pep
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQ*

RE22570.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22743-PA 446 GF22743-PA 76..431 31..396 1024 56.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10916-PA 378 GG10916-PA 1..378 1..396 1672 80.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10974-PA 406 GH10974-PA 15..389 30..395 931 53.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PB 396 CG40191-PB 1..396 1..396 2032 100 Plus
CG40191-PC 378 CG40191-PC 1..378 1..396 1912 95.5 Plus
CG40191-PD 378 CG40191-PD 1..378 1..396 1912 95.5 Plus
CG40191-PA 378 CG40191-PA 1..378 1..396 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 129..396 1371 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17487-PA 396 GI17487-PA 13..379 30..395 978 55.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26163-PA 408 GL26163-PA 11..393 30..396 1098 56.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25313-PA 408 GA25313-PA 11..393 30..396 1098 56.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24773-PA 277 GM24773-PA 13..277 129..396 1261 89.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15142-PA 378 GD15142-PA 1..378 1..396 1865 88.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15088-PA 391 GJ15088-PA 2..374 30..395 983 55.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15339-PA 388 GK15339-PA 1..372 14..360 1054 55.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15212-PA 380 GE15212-PA 1..380 1..396 1637 77.9 Plus

RE22570.hyp Sequence

Translation from 62 to 1252

> RE22570.hyp
MGRFKLCASPREVFKKFSRIYVLANFLNFQVMKYEDFIKRIRKSLYYGVG
TPDTEMSVSLPFAEYAADLFSETHRGHSLHRLSCVSAAQVHATPCSLIMA
LIYLDRLNVIDSGYSCRITPQQLFVVSLMISTKFYAGHDERFYLEDWASD
ACMTEDRLKAVELEFLSAMGWNIYISNELFFDKLRNVERSLAEQQGLRRG
WLTYSELVQLLPSLEWTKFLVNSLSVLSLSYAASIITLAGAFFIASQVPG
TLWHRDVETASDFTMTISSQVSVSNALESTPFINVQVSSLLRKTSNVNVE
LMNLEKTSCARARLNKIEYKHPRHQSVPTLSFISTCPQLDLLYAQDGTRN
WLNIKSPNSDYKNNRNLSITVRSVQLEEQKAENDSVIWQANTEAMQ*

RE22570.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG40191-PB 396 CG40191-PB 1..396 1..396 2032 100 Plus
CG40191-PC 378 CG40191-PC 1..378 1..396 1912 95.5 Plus
CG40191-PD 378 CG40191-PD 1..378 1..396 1912 95.5 Plus
CG40191-PA 378 CG40191-PA 1..378 1..396 1912 95.5 Plus
CG40191-PE 268 CG40191-PE 1..268 129..396 1371 100 Plus