BDGP Sequence Production Resources |
Search the DGRC for RE22862
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 228 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sdc-RB |
Protein status: | RE22862.pep: gold |
Sequenced Size: | 1976 |
Gene | Date | Evidence |
---|---|---|
CG10497 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10497 | 2002-02-26 | Blastp of sequenced clone |
Sdc | 2008-04-29 | Release 5.5 accounting |
Sdc | 2008-08-15 | Release 5.9 accounting |
Sdc | 2008-12-18 | 5.12 accounting |
1976 bp (1976 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089610
> RE22862.complete AAGTCATTCGAAAAAATTTTACGGAGCGAAGAAGGCACGGTTACGTCCGG ATTTTAGCGCGATTTCGTGTCTGTTGTTTGGTCGGCACTCGAGTGTAAAG AAATTTGTACATCCCCGAAAAGAATCGCGAGTGCAATTTTGTAAATACGG AGAGGAAAAGCGTTCTTCTAGTGTGAAACCAGTTTAAAAAGCTGCAAGAA ATATATATAGCTCAATATATATATTTATATATGTGTGCCGCCGCCAGTTC TAATCTTTAAATCAATAAACAAAACTGGAAGCCATTAGCTGAAATCACAA CAACAGCAACCGCAGAAGAAACCAACGGGGAAAATGAAGCCAAAGCAGAA GATTTCCGTAGAGCCGCTATTGCTAGTCGCAATTCTCATCGGAGTTCTGG TAGCCGCCACCCACGCTCAAGATCAGAAATCGGTGAAACCATCGGCGGCA GCGCCATCAGCAGCAGCTTCTCGGCCCCATGATGAAATCTATATCGACGA TGATAGCATCGAGGGATCCGGCGGACGCGGCGGTATACACGAAGATCTAG AGAAAGATCCGGACTATTCTGGCTCCGGCTTTGGACCCGATGACGAGGAC GCCGAACCCGATCAGCATTCGCACAGTTCGCACAACACGCGCATCTCGCA GAGCAGCAACTCCGGCATAAACACGGGCGCAGGTGGCAGCAACGTGCACG AATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGGGC ATCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGACGA TCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCATTG GCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCATC GTGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAGCC AAAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCGCG AGTTCTACGCCTGAGATAATGGCACGTCGCGCAGGTATTAAGTTGACCAC AAGTGCAGGAACAAAGTGTGCGTAAGGACGGAACGGTGTGCGTATGACTG GACGAAGGCGGAGCGACTGGGTTTGGTTTGGCTCAACTGAATACACTGTG CGGAGTGGTGGGGGTGCAGCATCATCGGCAAACCACTGAAACAAGGATTA ATCATCCGCAGCAGCAGCTACAAAACTAACACAAAAACAAATGAAAATTT CAAACGTTTTCAAACACACACAATTTTTCGTGAGGGGTAAATTAAATTAA AACAAAACAAGAAAAGAACACAAATCGGCAATATAATAACGAGGAAAAAC AAAAAAAAAAAAAGGAAAACTTACCTGTAAGTTAATGCAAAATACACACT CTGCGTATGTGGGTGTGTGTACGCGACTTTTCTATTTAAGTAAGTTTTAA GCGACAAAAACAAACAAAAATATCAAATATAATTGCAAATAAATCATGCG AAATTAAATATATGAATAATATATTATATATAAATAGTGAAACCAATATA AGGGCGGGCAAAATTAAGCGAATTAATTATGAATTACGAGTAGAGCAAAA GCAGAAAGAGCAGGAGAAAATTGAATAATAACTATAATAATAAACACACA CACACACGCGCATCCAACTACATAGATGTAAAAGGCAACTTTCGTGCATA TTGAATATAAATGTATGGATTATATATGTTAGCTGAATAACGAAAGCGAA TTGGATACATCACGATTATCTCTCAACTCTCTATAGATCCCTCGTCGAAC CTCCACACACTTAACTCTTCATTTCAACAATCGATTTGTCAAACGAAATC CAATGAAAGCGGCACAGCAAGCGGAAATCGATGCATAAATGTTTTTAAGT TATACATAAGCGAAACTATGTAATTATTAGTGTAATTCCTAAAACAAACA AAACAAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc.e | 3713 | Sdc.e | 1212..2514 | 674..1976 | 6470 | 99.7 | Plus |
Sdc.f | 3701 | Sdc.f | 1200..2502 | 674..1976 | 6470 | 99.7 | Plus |
Sdc.j | 3426 | Sdc.j | 1212..2514 | 674..1976 | 6470 | 99.7 | Plus |
Sdc.e | 3713 | Sdc.e | 23..696 | 1..674 | 3370 | 100 | Plus |
Sdc.f | 3701 | Sdc.f | 8..681 | 1..674 | 3370 | 100 | Plus |
Sdc.j | 3426 | Sdc.j | 23..696 | 1..674 | 3370 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17280160..17281283 | 1960..841 | 5380 | 99.2 | Minus |
chr2R | 21145070 | chr2R | 17366599..17366866 | 426..159 | 1340 | 100 | Minus |
chr2R | 21145070 | chr2R | 17281425..17281592 | 841..674 | 810 | 98.8 | Minus |
chr2R | 21145070 | chr2R | 17367522..17367681 | 160..1 | 785 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 17285726..17285864 | 673..535 | 695 | 100 | Minus |
chr2R | 21145070 | chr2R | 17298835..17298945 | 534..424 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21393601..21394736 | 1976..841 | 5650 | 99.8 | Minus |
2R | 25286936 | 2R | 21480091..21480358 | 426..159 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 21394878..21395045 | 841..674 | 825 | 99.4 | Minus |
2R | 25286936 | 2R | 21481014..21481173 | 160..1 | 800 | 100 | Minus |
2R | 25286936 | 2R | 21399175..21399313 | 673..535 | 695 | 100 | Minus |
2R | 25286936 | 2R | 21412311..21412421 | 534..424 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21394800..21395935 | 1976..841 | 5650 | 99.8 | Minus |
2R | 25260384 | 2R | 21481290..21481557 | 426..159 | 1340 | 100 | Minus |
2R | 25260384 | 2R | 21396077..21396244 | 841..674 | 825 | 99.4 | Minus |
2R | 25260384 | 2R | 21482213..21482372 | 160..1 | 800 | 100 | Minus |
2R | 25260384 | 2R | 21400374..21400512 | 673..535 | 695 | 100 | Minus |
2R | 25260384 | 2R | 21413510..21413620 | 534..424 | 555 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6108..6219 | 1287..1398 | 136 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2530 | 1166..1234 | 118 | 68.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1132 | 282..351 | 114 | 65.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17298835..17298942 | 427..534 | 100 | <- | Minus |
chr2R | 17285726..17285864 | 535..673 | 100 | <- | Minus |
chr2R | 17280180..17281282 | 842..1940 | 99 | <- | Minus |
chr2R | 17281425..17281592 | 674..841 | 98 | <- | Minus |
chr2R | 17366599..17366864 | 161..426 | 100 | <- | Minus |
chr2R | 17367522..17367681 | 1..160 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..681 | 334..1014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RF | 1..343 | 334..675 | 99 | <- | Plus |
Sdc-RF | 860..1200 | 676..1014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..681 | 334..1014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..681 | 334..1014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..681 | 334..1014 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..154 | 6..160 | 99 | -> | Plus |
Sdc-RB | 178..1957 | 161..1940 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 3..161 | 1..160 | 99 | -> | Plus |
Sdc-RB | 185..1964 | 161..1940 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 4..162 | 1..160 | 99 | -> | Plus |
Sdc-RB | 186..1965 | 161..1940 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 1..154 | 6..160 | 99 | -> | Plus |
Sdc-RB | 178..1957 | 161..1940 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sdc-RB | 4..162 | 1..160 | 99 | -> | Plus |
Sdc-RB | 186..1965 | 161..1940 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21412311..21412418 | 427..534 | 100 | <- | Minus |
2R | 21480091..21480356 | 161..426 | 100 | <- | Minus |
2R | 21481014..21481173 | 1..160 | 100 | Minus | |
2R | 21393637..21394735 | 842..1940 | 100 | <- | Minus |
2R | 21394878..21395045 | 674..841 | 99 | <- | Minus |
2R | 21399175..21399313 | 535..673 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21412311..21412418 | 427..534 | 100 | <- | Minus |
2R | 21480091..21480356 | 161..426 | 100 | <- | Minus |
2R | 21481014..21481173 | 1..160 | 100 | Minus | |
2R | 21393637..21394735 | 842..1940 | 100 | <- | Minus |
2R | 21394878..21395045 | 674..841 | 99 | <- | Minus |
2R | 21399175..21399313 | 535..673 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21412311..21412418 | 427..534 | 100 | <- | Minus |
2R | 21480091..21480356 | 161..426 | 100 | <- | Minus |
2R | 21481014..21481173 | 1..160 | 100 | Minus | |
2R | 21393637..21394735 | 842..1940 | 100 | <- | Minus |
2R | 21394878..21395045 | 674..841 | 99 | <- | Minus |
2R | 21399175..21399313 | 535..673 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17281142..17282240 | 842..1940 | 100 | <- | Minus |
arm_2R | 17282383..17282550 | 674..841 | 99 | <- | Minus |
arm_2R | 17286680..17286818 | 535..673 | 100 | <- | Minus |
arm_2R | 17299816..17299923 | 427..534 | 100 | <- | Minus |
arm_2R | 17367596..17367861 | 161..426 | 100 | <- | Minus |
arm_2R | 17368519..17368678 | 1..160 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21400374..21400512 | 535..673 | 100 | <- | Minus |
2R | 21413510..21413617 | 427..534 | 100 | <- | Minus |
2R | 21394836..21395934 | 842..1940 | 100 | <- | Minus |
2R | 21396077..21396244 | 674..841 | 99 | <- | Minus |
2R | 21481290..21481555 | 161..426 | 100 | <- | Minus |
2R | 21482213..21482372 | 1..160 | 100 | Minus |
Translation from 333 to 1013
> RE22862.pep MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS YALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12095-PA | 438 | GF12095-PA | 318..438 | 107..226 | 562 | 91.7 | Plus |
Dana\GF12095-PA | 438 | GF12095-PA | 1..121 | 1..114 | 380 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20776-PA | 406 | GG20776-PA | 295..406 | 115..226 | 598 | 100 | Plus |
Dere\GG20776-PA | 406 | GG20776-PA | 1..114 | 1..114 | 502 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20057-PA | 120 | GH20057-PA | 5..120 | 111..226 | 527 | 86.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PB | 226 | CG10497-PB | 1..226 | 1..226 | 1167 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PA | 399 | CG10497-PA | 1..132 | 1..132 | 592 | 87.9 | Plus |
Sdc-PD | 398 | CG10497-PD | 1..114 | 1..114 | 587 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 203..322 | 109..226 | 586 | 95.8 | Plus |
Sdc-PH | 266 | CG10497-PH | 120..266 | 57..226 | 582 | 72.9 | Plus |
Sdc-PA | 399 | CG10497-PA | 253..399 | 57..226 | 582 | 72.9 | Plus |
Sdc-PI | 494 | CG10497-PI | 348..494 | 57..226 | 582 | 72.9 | Plus |
Sdc-PJ | 495 | CG10497-PJ | 349..495 | 57..226 | 582 | 72.9 | Plus |
Sdc-PD | 398 | CG10497-PD | 252..398 | 57..226 | 582 | 72.9 | Plus |
Sdc-PG | 75 | CG10497-PG | 1..75 | 152..226 | 380 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20467-PA | 426 | GI20467-PA | 318..426 | 119..226 | 519 | 87.2 | Plus |
Dmoj\GI20467-PA | 426 | GI20467-PA | 45..124 | 30..110 | 223 | 67.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17492-PA | 468 | GL17492-PA | 359..468 | 117..226 | 579 | 98.2 | Plus |
Dper\GL17492-PA | 468 | GL17492-PA | 75..166 | 32..114 | 325 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10355-PD | 223 | GA10355-PD | 34..223 | 37..226 | 883 | 91.1 | Plus |
Dpse\GA10355-PB | 423 | GA10355-PB | 314..423 | 117..226 | 576 | 98.2 | Plus |
Dpse\GA10355-PB | 423 | GA10355-PB | 20..121 | 22..114 | 325 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15720-PA | 388 | GM15720-PA | 277..388 | 115..226 | 596 | 100 | Plus |
Dsec\GM15720-PA | 388 | GM15720-PA | 1..114 | 1..114 | 521 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25198-PA | 398 | GD25198-PA | 287..398 | 115..226 | 597 | 100 | Plus |
Dsim\GD25198-PA | 398 | GD25198-PA | 1..114 | 1..114 | 527 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22317-PA | 433 | GJ22317-PA | 327..433 | 121..226 | 518 | 89.7 | Plus |
Dvir\GJ22317-PA | 433 | GJ22317-PA | 35..113 | 26..104 | 252 | 68.3 | Plus |
Translation from 333 to 1013
> RE22862.hyp MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS YALDEPKRSPANNSYAKNANNREFYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdc-PB | 226 | CG10497-PB | 1..226 | 1..226 | 1167 | 100 | Plus |
Sdc-PK | 322 | CG10497-PK | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PI | 494 | CG10497-PI | 1..141 | 1..147 | 598 | 83 | Plus |
Sdc-PA | 399 | CG10497-PA | 1..132 | 1..132 | 592 | 87.9 | Plus |
Sdc-PK | 322 | CG10497-PK | 203..322 | 109..226 | 586 | 95.8 | Plus |
Sdc-PH | 266 | CG10497-PH | 120..266 | 57..226 | 582 | 72.9 | Plus |
Sdc-PA | 399 | CG10497-PA | 253..399 | 57..226 | 582 | 72.9 | Plus |