Clone RE22862 Report

Search the DGRC for RE22862

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:228
Well:62
Vector:pFlc-1
Associated Gene/TranscriptSdc-RB
Protein status:RE22862.pep: gold
Sequenced Size:1976

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10497 2002-01-01 Sim4 clustering to Release 2
CG10497 2002-02-26 Blastp of sequenced clone
Sdc 2008-04-29 Release 5.5 accounting
Sdc 2008-08-15 Release 5.9 accounting
Sdc 2008-12-18 5.12 accounting

Clone Sequence Records

RE22862.complete Sequence

1976 bp (1976 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089610

> RE22862.complete
AAGTCATTCGAAAAAATTTTACGGAGCGAAGAAGGCACGGTTACGTCCGG
ATTTTAGCGCGATTTCGTGTCTGTTGTTTGGTCGGCACTCGAGTGTAAAG
AAATTTGTACATCCCCGAAAAGAATCGCGAGTGCAATTTTGTAAATACGG
AGAGGAAAAGCGTTCTTCTAGTGTGAAACCAGTTTAAAAAGCTGCAAGAA
ATATATATAGCTCAATATATATATTTATATATGTGTGCCGCCGCCAGTTC
TAATCTTTAAATCAATAAACAAAACTGGAAGCCATTAGCTGAAATCACAA
CAACAGCAACCGCAGAAGAAACCAACGGGGAAAATGAAGCCAAAGCAGAA
GATTTCCGTAGAGCCGCTATTGCTAGTCGCAATTCTCATCGGAGTTCTGG
TAGCCGCCACCCACGCTCAAGATCAGAAATCGGTGAAACCATCGGCGGCA
GCGCCATCAGCAGCAGCTTCTCGGCCCCATGATGAAATCTATATCGACGA
TGATAGCATCGAGGGATCCGGCGGACGCGGCGGTATACACGAAGATCTAG
AGAAAGATCCGGACTATTCTGGCTCCGGCTTTGGACCCGATGACGAGGAC
GCCGAACCCGATCAGCATTCGCACAGTTCGCACAACACGCGCATCTCGCA
GAGCAGCAACTCCGGCATAAACACGGGCGCAGGTGGCAGCAACGTGCACG
AATTGGACCCCAATACGAACGTGAATAGCCAGCCCTCCGACACAAAGGGC
ATCGATCACAGGCCCAACGGCAACGAAGTGGTCATCATGAGCGAGGACGA
TCGCACGTCGAGCTTCTTCTCGCAGCCCGGAATTCTGGCTGCTGTCATTG
GCGGTGCCGTCGTTGGCCTGCTCTGCGCCATACTCGTGGTCATGTTCATC
GTGTACCGCATGAGGAAAAAGGACGAGGGATCCTATGCGCTGGACGAGCC
AAAGAGATCGCCGGCCAACAATTCGTATGCGAAAAATGCGAATAACCGCG
AGTTCTACGCCTGAGATAATGGCACGTCGCGCAGGTATTAAGTTGACCAC
AAGTGCAGGAACAAAGTGTGCGTAAGGACGGAACGGTGTGCGTATGACTG
GACGAAGGCGGAGCGACTGGGTTTGGTTTGGCTCAACTGAATACACTGTG
CGGAGTGGTGGGGGTGCAGCATCATCGGCAAACCACTGAAACAAGGATTA
ATCATCCGCAGCAGCAGCTACAAAACTAACACAAAAACAAATGAAAATTT
CAAACGTTTTCAAACACACACAATTTTTCGTGAGGGGTAAATTAAATTAA
AACAAAACAAGAAAAGAACACAAATCGGCAATATAATAACGAGGAAAAAC
AAAAAAAAAAAAAGGAAAACTTACCTGTAAGTTAATGCAAAATACACACT
CTGCGTATGTGGGTGTGTGTACGCGACTTTTCTATTTAAGTAAGTTTTAA
GCGACAAAAACAAACAAAAATATCAAATATAATTGCAAATAAATCATGCG
AAATTAAATATATGAATAATATATTATATATAAATAGTGAAACCAATATA
AGGGCGGGCAAAATTAAGCGAATTAATTATGAATTACGAGTAGAGCAAAA
GCAGAAAGAGCAGGAGAAAATTGAATAATAACTATAATAATAAACACACA
CACACACGCGCATCCAACTACATAGATGTAAAAGGCAACTTTCGTGCATA
TTGAATATAAATGTATGGATTATATATGTTAGCTGAATAACGAAAGCGAA
TTGGATACATCACGATTATCTCTCAACTCTCTATAGATCCCTCGTCGAAC
CTCCACACACTTAACTCTTCATTTCAACAATCGATTTGTCAAACGAAATC
CAATGAAAGCGGCACAGCAAGCGGAAATCGATGCATAAATGTTTTTAAGT
TATACATAAGCGAAACTATGTAATTATTAGTGTAATTCCTAAAACAAACA
AAACAAAAACAAAAAAAAAAAAAAAA

RE22862.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc.e 3713 Sdc.e 1212..2514 674..1976 6470 99.7 Plus
Sdc.f 3701 Sdc.f 1200..2502 674..1976 6470 99.7 Plus
Sdc.j 3426 Sdc.j 1212..2514 674..1976 6470 99.7 Plus
Sdc.e 3713 Sdc.e 23..696 1..674 3370 100 Plus
Sdc.f 3701 Sdc.f 8..681 1..674 3370 100 Plus
Sdc.j 3426 Sdc.j 23..696 1..674 3370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17280160..17281283 1960..841 5380 99.2 Minus
chr2R 21145070 chr2R 17366599..17366866 426..159 1340 100 Minus
chr2R 21145070 chr2R 17281425..17281592 841..674 810 98.8 Minus
chr2R 21145070 chr2R 17367522..17367681 160..1 785 99.4 Minus
chr2R 21145070 chr2R 17285726..17285864 673..535 695 100 Minus
chr2R 21145070 chr2R 17298835..17298945 534..424 555 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21393601..21394736 1976..841 5650 99.8 Minus
2R 25286936 2R 21480091..21480358 426..159 1340 100 Minus
2R 25286936 2R 21394878..21395045 841..674 825 99.4 Minus
2R 25286936 2R 21481014..21481173 160..1 800 100 Minus
2R 25286936 2R 21399175..21399313 673..535 695 100 Minus
2R 25286936 2R 21412311..21412421 534..424 555 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21394800..21395935 1976..841 5650 99.8 Minus
2R 25260384 2R 21481290..21481557 426..159 1340 100 Minus
2R 25260384 2R 21396077..21396244 841..674 825 99.4 Minus
2R 25260384 2R 21482213..21482372 160..1 800 100 Minus
2R 25260384 2R 21400374..21400512 673..535 695 100 Minus
2R 25260384 2R 21413510..21413620 534..424 555 100 Minus
Blast to na_te.dros performed 2019-03-16 03:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6108..6219 1287..1398 136 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2459..2530 1166..1234 118 68.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1132 282..351 114 65.8 Plus

RE22862.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:19:33 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17298835..17298942 427..534 100 <- Minus
chr2R 17285726..17285864 535..673 100 <- Minus
chr2R 17280180..17281282 842..1940 99 <- Minus
chr2R 17281425..17281592 674..841 98 <- Minus
chr2R 17366599..17366864 161..426 100 <- Minus
chr2R 17367522..17367681 1..160 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:14:33 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..681 334..1014 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:34:11 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RF 1..343 334..675 99 <- Plus
Sdc-RF 860..1200 676..1014 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:43:46 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..681 334..1014 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:06:24 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..681 334..1014 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:34:41 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..681 334..1014 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:14:32 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..154 6..160 99 -> Plus
Sdc-RB 178..1957 161..1940 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:34:11 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 3..161 1..160 99 -> Plus
Sdc-RB 185..1964 161..1940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:43:46 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 4..162 1..160 99 -> Plus
Sdc-RB 186..1965 161..1940 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:06:24 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 1..154 6..160 99 -> Plus
Sdc-RB 178..1957 161..1940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:34:41 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
Sdc-RB 4..162 1..160 99 -> Plus
Sdc-RB 186..1965 161..1940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:33 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21412311..21412418 427..534 100 <- Minus
2R 21480091..21480356 161..426 100 <- Minus
2R 21481014..21481173 1..160 100   Minus
2R 21393637..21394735 842..1940 100 <- Minus
2R 21394878..21395045 674..841 99 <- Minus
2R 21399175..21399313 535..673 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:33 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21412311..21412418 427..534 100 <- Minus
2R 21480091..21480356 161..426 100 <- Minus
2R 21481014..21481173 1..160 100   Minus
2R 21393637..21394735 842..1940 100 <- Minus
2R 21394878..21395045 674..841 99 <- Minus
2R 21399175..21399313 535..673 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:19:33 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21412311..21412418 427..534 100 <- Minus
2R 21480091..21480356 161..426 100 <- Minus
2R 21481014..21481173 1..160 100   Minus
2R 21393637..21394735 842..1940 100 <- Minus
2R 21394878..21395045 674..841 99 <- Minus
2R 21399175..21399313 535..673 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:43:46 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17281142..17282240 842..1940 100 <- Minus
arm_2R 17282383..17282550 674..841 99 <- Minus
arm_2R 17286680..17286818 535..673 100 <- Minus
arm_2R 17299816..17299923 427..534 100 <- Minus
arm_2R 17367596..17367861 161..426 100 <- Minus
arm_2R 17368519..17368678 1..160 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:40:14 Download gff for RE22862.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21400374..21400512 535..673 100 <- Minus
2R 21413510..21413617 427..534 100 <- Minus
2R 21394836..21395934 842..1940 100 <- Minus
2R 21396077..21396244 674..841 99 <- Minus
2R 21481290..21481555 161..426 100 <- Minus
2R 21482213..21482372 1..160 100   Minus

RE22862.pep Sequence

Translation from 333 to 1013

> RE22862.pep
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV
IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS
YALDEPKRSPANNSYAKNANNREFYA*

RE22862.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12095-PA 438 GF12095-PA 318..438 107..226 562 91.7 Plus
Dana\GF12095-PA 438 GF12095-PA 1..121 1..114 380 66.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20776-PA 406 GG20776-PA 295..406 115..226 598 100 Plus
Dere\GG20776-PA 406 GG20776-PA 1..114 1..114 502 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20057-PA 120 GH20057-PA 5..120 111..226 527 86.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PB 226 CG10497-PB 1..226 1..226 1167 100 Plus
Sdc-PK 322 CG10497-PK 1..141 1..147 598 83 Plus
Sdc-PI 494 CG10497-PI 1..141 1..147 598 83 Plus
Sdc-PJ 495 CG10497-PJ 1..141 1..147 598 83 Plus
Sdc-PA 399 CG10497-PA 1..132 1..132 592 87.9 Plus
Sdc-PD 398 CG10497-PD 1..114 1..114 587 100 Plus
Sdc-PK 322 CG10497-PK 203..322 109..226 586 95.8 Plus
Sdc-PH 266 CG10497-PH 120..266 57..226 582 72.9 Plus
Sdc-PA 399 CG10497-PA 253..399 57..226 582 72.9 Plus
Sdc-PI 494 CG10497-PI 348..494 57..226 582 72.9 Plus
Sdc-PJ 495 CG10497-PJ 349..495 57..226 582 72.9 Plus
Sdc-PD 398 CG10497-PD 252..398 57..226 582 72.9 Plus
Sdc-PG 75 CG10497-PG 1..75 152..226 380 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20467-PA 426 GI20467-PA 318..426 119..226 519 87.2 Plus
Dmoj\GI20467-PA 426 GI20467-PA 45..124 30..110 223 67.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17492-PA 468 GL17492-PA 359..468 117..226 579 98.2 Plus
Dper\GL17492-PA 468 GL17492-PA 75..166 32..114 325 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10355-PD 223 GA10355-PD 34..223 37..226 883 91.1 Plus
Dpse\GA10355-PB 423 GA10355-PB 314..423 117..226 576 98.2 Plus
Dpse\GA10355-PB 423 GA10355-PB 20..121 22..114 325 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15720-PA 388 GM15720-PA 277..388 115..226 596 100 Plus
Dsec\GM15720-PA 388 GM15720-PA 1..114 1..114 521 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25198-PA 398 GD25198-PA 287..398 115..226 597 100 Plus
Dsim\GD25198-PA 398 GD25198-PA 1..114 1..114 527 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22317-PA 433 GJ22317-PA 327..433 121..226 518 89.7 Plus
Dvir\GJ22317-PA 433 GJ22317-PA 35..113 26..104 252 68.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20743-PA 570 GK20743-PA 452..570 113..226 502 81.5 Plus
Dwil\GK20743-PA 570 GK20743-PA 32..148 12..120 250 59.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13713-PA 499 GE13713-PA 388..499 115..226 597 100 Plus
Dyak\GE13713-PA 499 GE13713-PA 1..114 1..114 515 97.4 Plus

RE22862.hyp Sequence

Translation from 333 to 1013

> RE22862.hyp
MKPKQKISVEPLLLVAILIGVLVAATHAQDQKSVKPSAAAPSAAASRPHD
EIYIDDDSIEGSGGRGGIHEDLEKDPDYSGSGFGPDDEDAEPDQHSHSSH
NTRISQSSNSGINTGAGGSNVHELDPNTNVNSQPSDTKGIDHRPNGNEVV
IMSEDDRTSSFFSQPGILAAVIGGAVVGLLCAILVVMFIVYRMRKKDEGS
YALDEPKRSPANNSYAKNANNREFYA*

RE22862.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sdc-PB 226 CG10497-PB 1..226 1..226 1167 100 Plus
Sdc-PK 322 CG10497-PK 1..141 1..147 598 83 Plus
Sdc-PI 494 CG10497-PI 1..141 1..147 598 83 Plus
Sdc-PA 399 CG10497-PA 1..132 1..132 592 87.9 Plus
Sdc-PK 322 CG10497-PK 203..322 109..226 586 95.8 Plus
Sdc-PH 266 CG10497-PH 120..266 57..226 582 72.9 Plus
Sdc-PA 399 CG10497-PA 253..399 57..226 582 72.9 Plus