Clone RE22882 Report

Search the DGRC for RE22882

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:228
Well:82
Vector:pFlc-1
Associated Gene/TranscriptPlexB-RA
Protein status:RE22882.pep: gold
Preliminary Size:2730
Sequenced Size:6742

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17245 2002-01-01 Sim4 clustering to Release 2
CG17245 2003-01-01 Sim4 clustering to Release 3
CG17245 2003-08-05 Blastp of sequenced clone
plexB 2008-04-29 Release 5.5 accounting
plexB 2008-08-15 Release 5.9 accounting
plexB 2008-12-18 5.12 accounting

Clone Sequence Records

RE22882.complete Sequence

6742 bp (6742 high quality bases) assembled on 2003-08-05

GenBank Submission: BT010009

> RE22882.complete
AATAATCTGCTCTAGGACTGATAGTGTACACACAACGTTTGAGCGTTGCC
TAAGAAGTTTTTTTTAAATAAATATTTGTTTACATTGACTAATCGATTTT
TTGTGTTAAACAACCTTATAAAAAATGCGCTAAACCTAAAATAGCCAAAT
GGATCATTTTAATTTAAAAATATTTATGCACCTACAGTGAATCAGCGGCA
TATAAAATTAATTCGCATTAAATTCAATCGATATTAAAAAGTTTATATAT
TAAGGAGAGAGAATGTAGAGCTAAATAATAATAAAAATGACATATGGGGA
ATTGATGCCCAAACTCAACTACAAACTGATCATACACAAAACCACAAATA
AATATGTTGCGAAAGGAATTGTATTGTGCAAACATTATACATGTTTTACA
TGTACTGTGTATTATTATCATACTCGGTTCTCAGCATTATTGCGTTAACT
GCATTGAAGAACTGCCGGCTCAGGCGTTATCTCCCTTAAATGACATAGTC
GCCCAGTTTAACTTGCCATCAATACCAGTTCAATCAACAGCTTCCAGCTA
TGGCAATCGATCAATTGGAAACAATATAGAAAGTGTTAGAGACTCTCAAT
CTAAAAATTATTTTACTCACATGAGCTTCGACTTTATGCACAATGTTTTG
TTTGCGGGTGCTACAAATAAAATACTTAAACTTAACGAAAACCTTCGAGT
GCTGGCCGAGGCTGTTACTGGGCCGTTACATGATTCCCCGCAATGTCACG
CTGGAGGCTGTCCGGAAGATATTGAGACATCGCTTGTCAATAACTTCAAC
AAAATTCTAGTAGTAAGCTACGCTCACGATGGTATTCTCATAGCGTGTGG
AAGCATTCGACAAGGAGCCTGCGAAATTTACAGCCTGCCACGTTTTCCGG
CAACGCCCCAGTTTTTTGCAGTTCCATTGGCTGCTAACGATGAAAACGCG
TCTACATATGCATTTGTAGGTCCGGCGAGATATGCGTGGAAAGAAGAGGA
TATTTTATATGTGGGGACAACATTTACGAATGTTGGTGATTATCGTCATG
ACGTGCCAGCCATTTCGTCCCGCCGACTTGATGATTTAAACTATGCTGAA
TTTTCAATACAGCAGTCAATTATAAATATCGATGTAAAATATCGGGATCA
TTTTCTAGTCGATTATATTTACGGCTTTAATTCTTCTGAATATGCGTACT
TCATAATTGTTCAAAAAAAATCACATTTAGCTGATGAGGCCGGTTATGTA
ACACGCTTGGCACGCATTTGCATTACAGATCCTAATTACGACAGCTATAC
TGAAATAACTGTTCAATGCACTGCAACTGAAAACAATGTTGACTACAATA
TTGTAAGGGATGCGAAAGTAACTCCAGCCAGCCACAAATTGGCGCAAAAA
ATGGGCATAAAAAAAGACGATCACGTTTTAGTAACGGTTTTTTCGCCCTC
AAGAGAAATAAGTAATCAGCCAGAAAGTAAGTCTGCTATGTGTATATATA
GCATTAAAGATATTGAAGACATGTTCATTGAAAATATCCATCTGTGTTTT
AACGGAACCACAAAAGATCGAAATTTGGGCTATATATCCGGCACCATTAA
TGATGGCAGATGTCCAATAGTTGGTTCGCTCGGTAACATTTACAACTTTT
GCTCTGTGGGACTTAAAATAAGCGGAGTATCCCCAATCACTGCACACGCA
CTTTTTCATTTTGATAATGTTTCAGTTACGTCAGTCACAGCAACTTCAAC
GACTGATCAGCAGCATTCTCTTGCATTTCTTGGAACGAACATGGGAGTAA
TCAAAAAAGTTTTATTATCTGGCCAAAGTCCGGGCGAGTACGAGGAAATA
GTTGTGGATGCTGGAAATCGTATACTACCAAATACAATGATGTCGCCAAA
AAAAGATTTTCTTTACGTACTTTCTCAACGAAAAATAACTAAGCTTAGAA
TCGAACACTGTTCTGTGTACACGAATTGTTCCGCTTGCTTAGAGTCTCGG
GATCCTTTTTGTGGATGGTGTTCCTTGGAGAAGCGGTGCACTGTACGATC
AACATGCCAGCGAGATACATCTGCGTCGAGATGGCTTTCATTAGGTAGTG
GACAGCAATGCATAGAATTTGAATCTATTATCCCAGAGAAAATACCAATT
TCTGAATTATCGCACCTGCATTTAATAATTCGAACTTTGCCCGAACCTTT
TAATGCAAAATACCGATGTGTTTTTGGAAATTCCACCCCCATTGATGCCG
AAATTCTGGAAAACGGACTCGGATGTGCTACTCCCCCATTAGATGAAAGA
CCATTAATACCAACAAACACTGATCATATTTTGGTGCCATTGTCAGTAAG
AAGTTCGGAGACAAATAAGGATTTTGTATCAAGGAATTTTGCTTTTTTTG
ACTGCTCACATCATGGAAATTGCCAGGAGTGTCTACAAAGTTCCTGGGGT
TGCAACTGGTGTATTTTTGATAATAAGTGCGTTCACAAGTCTTTGCAATG
CCGTAACATAGAAAATGCTGTAAGTACTGTTGGTCACTGCCCCCACTTAA
AAAAAAATCGTCCGGAAATACTTCTACCCGTAAGAGTGCCAATAGAAATT
CGGCTAGAGATTGAAAATTTACCAAAACCCAAGAGCGCACATGCTGGTTT
TTTATGTACAATACATATTGAAGCTGCTCAGATGCTACTCCCTGCTCACG
TTGAGTCAAATAAAATTGTAGTTTGCGAAAAAACACCATATTTCTACGAG
ATTAATACACATGAATATCAGGCGAAGGTTGTAGTTACATGGAACTTCCA
GCATTATGTGGACACCGCAATTGTTACATTATACAAGTGTGACGTGTTGG
GCTCCCATCGGGAACACCCTGATTGCAGTTTGTGCGTAACTCGAGATCCA
AAATATAAATGTGCTTGGTGCAGCAACTCATGTGTATATAATGAAACTTG
CATAGCTGATAAAAATTCTATCAGCTCAGGATCTAAATCCGCTATAGAAA
ACGAGTGCCCATTACCACGGATTGATATTATTAAACCATTATCTGGGCCA
GTCGAGGGTGGAACTCTTATTACAATTGAAGGAAGTAATTTGGGCATAAG
GGAGGAAGATGTTCGTGGCAAAATATTTATTGGTTCTGTGCCTTGTGAAC
TAGAAAATTATCAAATATCGGTAAAAATTGAATGCCGGACTGGAGCATCA
CTGTACGAAATGTCTGCACCCATAAAAGTTGCAAATGATGCAGGGTTTAC
TGAATCAAGTGTTCAGTTTCATTTTAAGAATGTGCTGTTAACAGGTTTAT
ATCCCACAATTGGCCCTAGGTCGGGAGGGACACAATTGTCTTTAATTGGG
AAGTTTTTGAACATTGGCTCAACTATGCGAGCATTTTTAGATGAGTATGA
GTGTCATATAGATGTTACACAAGCTTCATCATCCCAAGTTAGTTGTACTA
CATCAGAAGCGACCCAACCTGAACCAATACGGTCCCTTCATCTAGTTATT
GATGGTGCGAACAGAACGCTAGAATGCCAGATCTCAACCCCAAGCATTAC
CAATACAAATCCGACTCGAAGTAATTTTGGTTCTTATCAACTCCGTTCGC
TACCACGGCAACCCTGCTCTATTTTTAACTATACACAGGACCCGCGTATA
ATGCAAATTAAGCCATTGCGTAGTTTTAAAAGTGGTGGTCGAGTCCTCAC
CGTTCATGGAATATATCTTAATTCCATCCAAAAACCTGAACTAGAAGTGT
TTTATGACAATGAAAGAGTAAATAAAACATCTTGTGTGGTGATCAACTCT
AATCAAATGGAATGTCCATCTCCTCCTGTAAATTACAAATTTGAGACTTT
TAAAAAGACGAACAGAAAGATGGATACTGAATTGCACTTACAAAATTCTT
CGTTTCAAACTGAAACCAGGTATAAAAATGAATATGATAGAAAAAAGCGG
CGAGCCGACTTTGGAGACACTTTTCGCTTATACACAAATGCAGGATCTTC
AGCCAACTATTTTGTTAACAATAATATGGACGTCACCACATTCGTTAAGG
TTCATGAAACTCAATTAAACTTACAACTAAGTTTTGTAATGGACAATGTA
CAACTAGTTCGAAACTTGAATAAATATTTTCATGACATAAGGAGCACTAT
TGTCTATTTAGCAGACCCAAAATATTTGCCATTTCCCAACGACGGCGTTA
AACTCTACAAGGGTGACAGCTTGGTCATAGAAGGCGAGCTATTAAACTTG
GCAGCTGATGAGTACGATGTAAATGTAACTATTGGAACTTCCCAATGCAA
TATTACCAGCCTGGCACTTAACCAACTTTTATGCATTCCGCCGGAGCAAC
AACCACTTCCAACTGATGAAAATGGTGTGGATCAATCAACTGATTTACCT
CTTGTTGTCGTTAAAGTAGGTCGAAATCTTCGTTTTGTAATAGGATATCT
TAAGTATGATTTAAATAAACCCTATGTTTTCTCACATGCCTTGTTAGTCG
GCATATTAACGGTAGCACTTCTGGTCGTTGTTTTTGTAATTGTACTTATA
ATATTCAGAAGGAAATCAACACAAGCAGAACGCGAGTATAAACGTATTCA
GATACAGATGATTACATTAGAAAGCAACGTACGTTCTGAGTGTAAACAGG
CATTCGCTGAGCTCCAAACGGACATGACCGACCTAACAGCAGATTTGGAG
AGCACAGGCATACCAACTTTAGATCACGTCAACTATATTATGAAGGTGTT
TTTCCCTGGTGTATCAGATCATCCTATTTTAAATTCTCCAAAATTTCGTG
AAGGTAGCCCACAGACTAACTATGACGCAGCTATGGTACAATTTGAACAA
CTGATTGGCAATAAATATTTTTTATTAATGTTCATAGAAACATTAGAAGC
TCAACGTTCATCATTTTCTATTAGAGACCGAGTTAACGTTGCCTCATTAA
TAATGGTTGTTTTAATGAACAAGATGGAATATGCCACGGAAATTTTGAAG
TCCCTTTTATTACGTTTGATAGATAAATCACTTGCCAGCAAACATCCTCA
GCTGATGCTAAGGCGTACTGAAAGCGTTGTTGAAAAAATGTTGACCAACT
ACCTAGCAATTTGTATGTACGATTACCTGAAAGAGTACGCCGGATCAAAT
TTATTTTTGCTCTTCAAAGCAATAAAGCATCAAATTGAAAAGGGTTTAGT
GGACGCAATAACCAACGATGCCCGTTACTCCCTTTCAGAAGAACGTCTTC
TGCATGAACAAGTTACCCATTCTGTTGTAATATTGCATATTTTACAAGAT
GATCTTGATGAAAAAGTCCAATGTCGCGTTAACGATTGGGATACCATTTC
TCAAGTTAAGCTTAAAATCCTCGACGCAATTTTTAAAAACACTCCTTTCT
CTATGAGGCCATCTGTAAACGAAGTAGACTTAGAATGGAGGCACGGCCGA
GGAGGTCATCTTACATTACAAGATGAAGACTTGACAACCAAAACCGTTAA
CGGATGGAAGCGCCTTAACACATTAGCTCATTATGGAGTCAAAGAATCTG
CAGTAATGTCACTAATTGCACGTCAAAATGATAATTATCATATACCATAC
AGTAAAAACCAAAATTCGGCACCATACCACAATTTTTATTTTATAAACAA
TTCGCAAAGTCATATTATAATTAATAATGATATCGAATCAGGTTTGCAGC
AGCCCCGGGTTTACCATCTTGTTAAGCCCAATATACCTGATCATTATATG
AACATTAAAAATTCCGTGTTATCCGGAGGATCACCAGCATTTCAATCGCA
TGTCGTTAATAATTGTAATGACAGGGTGAACAAAACAATACCAGAAGTTT
ACCTTACACGTCTTCTGGCCACAAAAGGAACTATACAAAAATTTGTTGAT
GATTTTTTCTCAATTATTTTAACTGTTAATGAGGAGTTGCCACCTGCCGT
TAAATGGCTCTTTGACTTACTTGATGAAGCTGCGCGACGCCATGATATTG
CTGATACTGATATTGTGCACGCTTGGAAGTCAAATTGTTTGCCCCTTCGA
TTCTGGGTTAATTTTATAAAAAATCCGGATTTTATATTTGATGTAAATAA
AACATACAGCGTTGATTCCTGTTTAAGTGTCATTGCACAAACATTTATGG
ACGCTTGTTCAACATCAGAGCACAGACTTGGAAAAGATTCGCCGTCGAAT
AAGTTGCTGTTTGCTAAGGATATTCCAAACTATAGAATTATGGTCAAAGA
GTTTTACCGCGATGTATCAAGGCTTCCACAAATAAGCGACCAGGAAATGA
GTACAGCTATGCAACAGCTATCAGTAAGGCAAAACGAAGAGTTTGATACT
ATTTCTGCATTAAAAGAGTTATACATTTATATAACTAAATATAAGGATCA
GATTATGGAATCACTTGAAACTGATATTAATTGCCGAAAGATGCATCTTT
CACGAAAATTAGGAAATGTTGCTGCTACACTAGATGGTGATTGCACATCT
AATTGCTGACATCAATATGATTTTTTAAAAATTTTTGTAACTTTTTTATT
TTTTAGCAAGATAACAATTTATTTACAATTGTCAAAAAAATTATAAATTT
TAGTTTAAAAAATGTATGGACTTATACGTATGTAAGAGAAGCCGGCTTTG
TATTATAAGAACTATGCCCTATCGATCTTATTACGAAGAAAAATATACAA
CATTTTTGTCAAATTACAAAAAAAAAAAAAAAAAAAAAAAAA

RE22882.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
plexB-RA 6720 plexB-RA 1..6719 1..6719 33595 100 Plus
plexB.b 6929 plexB.b 210..6928 1..6719 33595 100 Plus
plexB.a 6310 plexB.a 1..6218 1..6218 31090 100 Plus
plexB.a 6310 plexB.a 6217..6294 2291..2368 360 97.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 57143..61914 5634..863 23845 100 Minus
chr4 1351717 chr4 28968..32381 5634..2204 16665 99.2 Minus
chr4 1351717 chr4 42239..45653 5634..2204 16625 99 Minus
chr4 1351717 chr4 50176..52082 5634..3728 9475 99.8 Minus
chr4 1351717 chr4 63546..64410 865..1 4325 100 Minus
chr4 1351717 chr4 41596..42180 6219..5635 2925 100 Minus
chr4 1351717 chr4 56500..57084 6219..5635 2925 100 Minus
chr4 1351717 chr4 49533..50117 6219..5635 2895 99.7 Minus
chr4 1351717 chr4 53437..53754 6717..6400 1590 100 Minus
chr4 1351717 chr4 33569..33886 6717..6400 1560 99.4 Minus
chr4 1351717 chr4 47949..48266 6717..6400 1560 99.4 Minus
chrU 10048995 chrU 5513000..5513317 6717..6400 1560 99.4 Minus
chr4 1351717 chr4 28620..28909 5924..5635 1450 100 Minus
chr4 1351717 chr4 26787..27103 6717..6400 1420 97.2 Minus
chr4 1351717 chr4 28372..28622 6219..5969 1255 100 Minus
chr4 1351717 chr4 27169..27353 6401..6217 925 100 Minus
chr4 1351717 chr4 33950..34134 6401..6217 925 100 Minus
chr4 1351717 chr4 53818..54002 6401..6217 925 100 Minus
chrU 10048995 chrU 5513381..5513565 6401..6217 925 100 Minus
chr4 1351717 chr4 48330..48514 6401..6217 910 99.5 Minus
chr4 1351717 chr4 52085..52249 2368..2204 780 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CR32010-RA 4242 CR32010-RA 762..3050 2975..5263 11190 99.2 Plus
CR32009-RA 2586 CR32009-RA 1..1394 3870..5263 6865 99.4 Plus
CR32010-RA 4242 CR32010-RA 3032..4242 5299..6509 6055 100 Plus
CR32009-RA 2586 CR32009-RA 1376..2586 5299..6509 6010 99.7 Plus
CR32011-RA 3666 CR32011-RA 690..1764 2975..4049 5345 99.8 Plus
CR32011-RA 3666 CR32011-RA 1765..2819 4209..5263 5125 99 Plus
CR32011-RA 3666 CR32011-RA 12..689 2204..2881 3375 99.8 Plus
CR32010-RA 4242 CR32010-RA 84..761 2204..2881 3345 99.5 Plus
CR32011-RA 3666 CR32011-RA 3137..3666 5980..6509 2635 99.8 Plus
CR32011-RA 3666 CR32011-RA 2801..3136 5299..5634 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 36516..41287 5634..863 23860 100 Minus
4 1348131 4 8340..11754 5634..2204 16715 99.2 Minus
4 1348131 4 21612..25026 5634..2204 16625 99 Minus
4 1348131 4 29549..31455 5634..3728 9475 99.8 Minus
4 1348131 4 42913..43777 865..1 4325 100 Minus
4 1348131 4 20969..21553 6219..5635 2925 100 Minus
4 1348131 4 35873..36457 6219..5635 2925 100 Minus
4 1348131 4 28906..29490 6219..5635 2895 99.7 Minus
4 1348131 4 32808..33127 6719..6400 1600 100 Minus
4 1348131 4 12940..13259 6719..6400 1570 99.4 Minus
4 1348131 4 27320..27639 6719..6400 1570 99.4 Minus
4 1348131 4 7992..8281 5924..5635 1450 100 Minus
4 1348131 4 6159..6477 6719..6400 1445 97.5 Minus
4 1348131 4 7744..7994 6219..5969 1255 100 Minus
4 1348131 4 6541..6725 6401..6217 925 100 Minus
4 1348131 4 13323..13507 6401..6217 925 100 Minus
4 1348131 4 33191..33375 6401..6217 925 100 Minus
4 1348131 4 27703..27887 6401..6217 910 99.5 Minus
4 1348131 4 31458..31622 2368..2204 795 98.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 36516..41287 5634..863 23860 100 Minus
4 1331231 4 8340..11053 5634..2921 13450 99.7 Minus
4 1331231 4 21612..24325 5634..2921 13390 99.5 Minus
4 1331231 4 29549..31455 5634..3728 9475 99.7 Minus
4 1331231 4 42913..43777 865..1 4325 100 Minus
4 1331231 4 11057..11754 2901..2204 3475 99.8 Minus
4 1331231 4 24329..25026 2901..2204 3445 99.5 Minus
4 1331231 4 35873..36457 6219..5635 2925 100 Minus
4 1331231 4 20969..21553 6219..5635 2925 100 Minus
4 1331231 4 28906..29490 6219..5635 2895 99.6 Minus
4 1331231 4 32808..33127 6719..6400 1600 100 Minus
4 1331231 4 27320..27639 6719..6400 1570 99.3 Minus
4 1331231 4 12940..13259 6719..6400 1570 99.3 Minus
4 1331231 4 6159..6477 6719..6400 1455 97.5 Minus
4 1331231 4 7992..8281 5924..5635 1450 100 Minus
4 1331231 4 7744..7994 6219..5969 1255 100 Minus
4 1331231 4 33191..33375 6401..6217 925 100 Minus
4 1331231 4 13323..13507 6401..6217 925 100 Minus
4 1331231 4 6541..6725 6401..6217 925 100 Minus
4 1331231 4 27703..27887 6401..6217 910 99.4 Minus
4 1331231 4 31458..31622 2368..2204 795 98.7 Minus
Blast to na_te.dros performed 2019-03-16 22:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 4021..4114 6598..6506 143 65.6 Minus
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1032..1193 313..161 133 57.9 Minus
S2 1735 S2 S2 1735bp 1646..1722 6517..6592 129 67.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 6597..6913 110..418 122 53.6 Plus

RE22882.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:44:57 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 53818..54000 6219..6401 100 <- Minus
chr4 53437..53752 6402..6717 100 <- Minus
chr4 56501..57084 5635..6218 100 <- Minus
chr4 57143..61912 865..5634 99 <- Minus
chr4 63547..64410 1..864 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:23:22 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6156 354..6509 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:27 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6156 354..6509 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:16:02 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6156 354..6509 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:04 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6156 354..6509 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:41:43 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
PlexB-RA 1..6156 354..6509 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 20:42:41 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
CR32010-RA 76..761 2197..2881 99 == Plus
CR32010-RA 762..3045 2975..5258 99 == Plus
CR32010-RA 3046..4242 5313..6509 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:23:22 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6717 1..6717 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:27 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6717 1..6717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:16:02 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RB 2..6718 1..6717 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:04 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
plexB-RA 1..6717 1..6717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:41:43 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
PlexB-RB 2..6718 1..6717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:57 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
4 32810..33125 6402..6717 100 <- Minus
4 33191..33373 6219..6401 100 <- Minus
4 35874..36457 5635..6218 100 <- Minus
4 36516..41285 865..5634 100 <- Minus
4 42914..43777 1..864 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:57 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
4 32810..33125 6402..6717 100 <- Minus
4 33191..33373 6219..6401 100 <- Minus
4 35874..36457 5635..6218 100 <- Minus
4 36516..41285 865..5634 100 <- Minus
4 42914..43777 1..864 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:44:57 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
4 32810..33125 6402..6717 100 <- Minus
4 33191..33373 6219..6401 100 <- Minus
4 35874..36457 5635..6218 100 <- Minus
4 36516..41285 865..5634 100 <- Minus
4 42914..43777 1..864 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:16:02 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 53436..53751 6402..6717 100 <- Minus
arm_4 53817..53999 6219..6401 100 <- Minus
arm_4 56500..57083 5635..6218 100 <- Minus
arm_4 57142..61911 865..5634 100 <- Minus
arm_4 63540..64403 1..864 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:12 Download gff for RE22882.complete
Subject Subject Range Query Range Percent Splice Strand
4 42914..43777 1..864 100   Minus
4 32810..33125 6402..6717 100 <- Minus
4 33191..33373 6219..6401 100 <- Minus
4 35874..36457 5635..6218 100 <- Minus
4 36516..41285 865..5634 100 <- Minus

RE22882.pep Sequence

Translation from 353 to 6508

> RE22882.pep
MLRKELYCANIIHVLHVLCIIIILGSQHYCVNCIEELPAQALSPLNDIVA
QFNLPSIPVQSTASSYGNRSIGNNIESVRDSQSKNYFTHMSFDFMHNVLF
AGATNKILKLNENLRVLAEAVTGPLHDSPQCHAGGCPEDIETSLVNNFNK
ILVVSYAHDGILIACGSIRQGACEIYSLPRFPATPQFFAVPLAANDENAS
TYAFVGPARYAWKEEDILYVGTTFTNVGDYRHDVPAISSRRLDDLNYAEF
SIQQSIINIDVKYRDHFLVDYIYGFNSSEYAYFIIVQKKSHLADEAGYVT
RLARICITDPNYDSYTEITVQCTATENNVDYNIVRDAKVTPASHKLAQKM
GIKKDDHVLVTVFSPSREISNQPESKSAMCIYSIKDIEDMFIENIHLCFN
GTTKDRNLGYISGTINDGRCPIVGSLGNIYNFCSVGLKISGVSPITAHAL
FHFDNVSVTSVTATSTTDQQHSLAFLGTNMGVIKKVLLSGQSPGEYEEIV
VDAGNRILPNTMMSPKKDFLYVLSQRKITKLRIEHCSVYTNCSACLESRD
PFCGWCSLEKRCTVRSTCQRDTSASRWLSLGSGQQCIEFESIIPEKIPIS
ELSHLHLIIRTLPEPFNAKYRCVFGNSTPIDAEILENGLGCATPPLDERP
LIPTNTDHILVPLSVRSSETNKDFVSRNFAFFDCSHHGNCQECLQSSWGC
NWCIFDNKCVHKSLQCRNIENAVSTVGHCPHLKKNRPEILLPVRVPIEIR
LEIENLPKPKSAHAGFLCTIHIEAAQMLLPAHVESNKIVVCEKTPYFYEI
NTHEYQAKVVVTWNFQHYVDTAIVTLYKCDVLGSHREHPDCSLCVTRDPK
YKCAWCSNSCVYNETCIADKNSISSGSKSAIENECPLPRIDIIKPLSGPV
EGGTLITIEGSNLGIREEDVRGKIFIGSVPCELENYQISVKIECRTGASL
YEMSAPIKVANDAGFTESSVQFHFKNVLLTGLYPTIGPRSGGTQLSLIGK
FLNIGSTMRAFLDEYECHIDVTQASSSQVSCTTSEATQPEPIRSLHLVID
GANRTLECQISTPSITNTNPTRSNFGSYQLRSLPRQPCSIFNYTQDPRIM
QIKPLRSFKSGGRVLTVHGIYLNSIQKPELEVFYDNERVNKTSCVVINSN
QMECPSPPVNYKFETFKKTNRKMDTELHLQNSSFQTETRYKNEYDRKKRR
ADFGDTFRLYTNAGSSANYFVNNNMDVTTFVKVHETQLNLQLSFVMDNVQ
LVRNLNKYFHDIRSTIVYLADPKYLPFPNDGVKLYKGDSLVIEGELLNLA
ADEYDVNVTIGTSQCNITSLALNQLLCIPPEQQPLPTDENGVDQSTDLPL
VVVKVGRNLRFVIGYLKYDLNKPYVFSHALLVGILTVALLVVVFVIVLII
FRRKSTQAEREYKRIQIQMITLESNVRSECKQAFAELQTDMTDLTADLES
TGIPTLDHVNYIMKVFFPGVSDHPILNSPKFREGSPQTNYDAAMVQFEQL
IGNKYFLLMFIETLEAQRSSFSIRDRVNVASLIMVVLMNKMEYATEILKS
LLLRLIDKSLASKHPQLMLRRTESVVEKMLTNYLAICMYDYLKEYAGSNL
FLLFKAIKHQIEKGLVDAITNDARYSLSEERLLHEQVTHSVVILHILQDD
LDEKVQCRVNDWDTISQVKLKILDAIFKNTPFSMRPSVNEVDLEWRHGRG
GHLTLQDEDLTTKTVNGWKRLNTLAHYGVKESAVMSLIARQNDNYHIPYS
KNQNSAPYHNFYFINNSQSHIIINNDIESGLQQPRVYHLVKPNIPDHYMN
IKNSVLSGGSPAFQSHVVNNCNDRVNKTIPEVYLTRLLATKGTIQKFVDD
FFSIILTVNEELPPAVKWLFDLLDEAARRHDIADTDIVHAWKSNCLPLRF
WVNFIKNPDFIFDVNKTYSVDSCLSVIAQTFMDACSTSEHRLGKDSPSNK
LLFAKDIPNYRIMVKEFYRDVSRLPQISDQEMSTAMQQLSVRQNEEFDTI
SALKELYIYITKYKDQIMESLETDINCRKMHLSRKLGNVAATLDGDCTSN
C*

RE22882.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19331-PA 2057 GF19331-PA 1..2057 1..2051 9213 84.1 Plus
Dana\GF21874-PA 1639 GF21874-PA 839..1632 1235..2039 1685 44.8 Plus
Dana\GF21874-PA 1639 GF21874-PA 101..830 421..1160 766 30.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16467-PA 2052 GG16467-PA 1..2052 1..2051 10480 95.4 Plus
Dere\GG16425-PA 1945 GG16425-PA 1135..1938 1225..2039 1691 44.5 Plus
Dere\GG16425-PA 1945 GG16425-PA 59..1136 69..1160 1299 31.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23993-PA 2067 GH23993-PA 51..2067 47..2051 8809 81.3 Plus
Dgri\GH23973-PA 1913 GH23973-PA 1117..1906 1240..2039 1629 44.6 Plus
Dgri\GH23973-PA 1913 GH23973-PA 44..1133 89..1183 1314 31.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
PlexB-PB 2051 CG17245-PB 1..2051 1..2051 10767 100 Plus
PlexB-PA 2051 CG17245-PA 1..2051 1..2051 10767 100 Plus
PlexA-PA 1945 CG11081-PA 4..1938 14..2039 2855 35.2 Plus
PlexA-PF 1928 CG11081-PF 4..1921 14..2039 2852 35.3 Plus
PlexA-PC 1505 CG11081-PC 3..1498 455..2039 2323 36.1 Plus
PlexA-PB 1505 CG11081-PB 3..1498 455..2039 2323 36.1 Plus
Sema5c-PB 1091 CG5661-PB 27..522 58..562 172 20.7 Plus
Sema5c-PA 1093 CG5661-PA 29..524 58..562 172 20.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14120-PA 2056 GI14120-PA 38..2056 47..2051 8885 81.9 Plus
Dmoj\GI14102-PA 1895 GI14102-PA 1099..1888 1240..2039 1670 44.5 Plus
Dmoj\GI14102-PA 1895 GI14102-PA 24..1115 87..1183 1317 31.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18389-PA 2069 GL18389-PA 1..2069 1..2051 9453 85.4 Plus
Dper\GL17574-PA 1909 GL17574-PA 39..1902 87..2039 2790 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14409-PA 2069 GA14409-PA 1..2069 1..2051 9450 85.4 Plus
Dpse\GA10747-PA 1628 GA10747-PA 78..1606 89..1695 2009 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23238-PA 2004 GM23238-PA 1..2004 1..2010 10558 97.5 Plus
Dsec\GM13016-PA 1364 GM13016-PA 76..1364 89..1464 1580 31.5 Plus
Dsec\GM13017-PA 178 GM13017-PA 1..171 1869..2039 516 56.1 Plus
Dsec\GM24682-PA 1378 GM24682-PA 353..809 86..562 173 20.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24393-PA 950 GD24393-PA 1..605 95..699 3231 98.5 Plus
Dsim\plexA-PA 900 GD24364-PA 518..893 1653..2039 894 47 Plus
Dsim\plexA-PA 900 GD24364-PA 76..516 89..530 634 35 Plus
Dsim\GD12751-PA 1097 GD12751-PA 72..528 86..562 170 21.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14688-PA 2069 GJ14688-PA 1..2069 2..2051 9004 80.8 Plus
Dvir\GJ20569-PA 1955 GJ20569-PA 1159..1948 1240..2039 1680 44.6 Plus
Dvir\GJ20569-PA 1955 GJ20569-PA 84..1175 87..1183 1340 31.9 Plus
Dvir\GJ14011-PA 1098 GJ14011-PA 226..530 262..563 160 22.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13667-PA 2061 GK13667-PA 33..2061 38..2051 9143 83.7 Plus
Dwil\GK13684-PA 1950 GK13684-PA 79..1943 89..2039 2877 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14532-PA 2052 GE14532-PA 1..2052 1..2051 10532 95.1 Plus
Dyak\GE14494-PA 1945 GE14494-PA 1135..1938 1225..2039 1683 44.4 Plus
Dyak\GE14494-PA 1945 GE14494-PA 4..1136 14..1160 1287 31.2 Plus

RE22882.hyp Sequence

Translation from 353 to 6508

> RE22882.hyp
MLRKELYCANIIHVLHVLCIIIILGSQHYCVNCIEELPAQALSPLNDIVA
QFNLPSIPVQSTASSYGNRSIGNNIESVRDSQSKNYFTHMSFDFMHNVLF
AGATNKILKLNENLRVLAEAVTGPLHDSPQCHAGGCPEDIETSLVNNFNK
ILVVSYAHDGILIACGSIRQGACEIYSLPRFPATPQFFAVPLAANDENAS
TYAFVGPARYAWKEEDILYVGTTFTNVGDYRHDVPAISSRRLDDLNYAEF
SIQQSIINIDVKYRDHFLVDYIYGFNSSEYAYFIIVQKKSHLADEAGYVT
RLARICITDPNYDSYTEITVQCTATENNVDYNIVRDAKVTPASHKLAQKM
GIKKDDHVLVTVFSPSREISNQPESKSAMCIYSIKDIEDMFIENIHLCFN
GTTKDRNLGYISGTINDGRCPIVGSLGNIYNFCSVGLKISGVSPITAHAL
FHFDNVSVTSVTATSTTDQQHSLAFLGTNMGVIKKVLLSGQSPGEYEEIV
VDAGNRILPNTMMSPKKDFLYVLSQRKITKLRIEHCSVYTNCSACLESRD
PFCGWCSLEKRCTVRSTCQRDTSASRWLSLGSGQQCIEFESIIPEKIPIS
ELSHLHLIIRTLPEPFNAKYRCVFGNSTPIDAEILENGLGCATPPLDERP
LIPTNTDHILVPLSVRSSETNKDFVSRNFAFFDCSHHGNCQECLQSSWGC
NWCIFDNKCVHKSLQCRNIENAVSTVGHCPHLKKNRPEILLPVRVPIEIR
LEIENLPKPKSAHAGFLCTIHIEAAQMLLPAHVESNKIVVCEKTPYFYEI
NTHEYQAKVVVTWNFQHYVDTAIVTLYKCDVLGSHREHPDCSLCVTRDPK
YKCAWCSNSCVYNETCIADKNSISSGSKSAIENECPLPRIDIIKPLSGPV
EGGTLITIEGSNLGIREEDVRGKIFIGSVPCELENYQISVKIECRTGASL
YEMSAPIKVANDAGFTESSVQFHFKNVLLTGLYPTIGPRSGGTQLSLIGK
FLNIGSTMRAFLDEYECHIDVTQASSSQVSCTTSEATQPEPIRSLHLVID
GANRTLECQISTPSITNTNPTRSNFGSYQLRSLPRQPCSIFNYTQDPRIM
QIKPLRSFKSGGRVLTVHGIYLNSIQKPELEVFYDNERVNKTSCVVINSN
QMECPSPPVNYKFETFKKTNRKMDTELHLQNSSFQTETRYKNEYDRKKRR
ADFGDTFRLYTNAGSSANYFVNNNMDVTTFVKVHETQLNLQLSFVMDNVQ
LVRNLNKYFHDIRSTIVYLADPKYLPFPNDGVKLYKGDSLVIEGELLNLA
ADEYDVNVTIGTSQCNITSLALNQLLCIPPEQQPLPTDENGVDQSTDLPL
VVVKVGRNLRFVIGYLKYDLNKPYVFSHALLVGILTVALLVVVFVIVLII
FRRKSTQAEREYKRIQIQMITLESNVRSECKQAFAELQTDMTDLTADLES
TGIPTLDHVNYIMKVFFPGVSDHPILNSPKFREGSPQTNYDAAMVQFEQL
IGNKYFLLMFIETLEAQRSSFSIRDRVNVASLIMVVLMNKMEYATEILKS
LLLRLIDKSLASKHPQLMLRRTESVVEKMLTNYLAICMYDYLKEYAGSNL
FLLFKAIKHQIEKGLVDAITNDARYSLSEERLLHEQVTHSVVILHILQDD
LDEKVQCRVNDWDTISQVKLKILDAIFKNTPFSMRPSVNEVDLEWRHGRG
GHLTLQDEDLTTKTVNGWKRLNTLAHYGVKESAVMSLIARQNDNYHIPYS
KNQNSAPYHNFYFINNSQSHIIINNDIESGLQQPRVYHLVKPNIPDHYMN
IKNSVLSGGSPAFQSHVVNNCNDRVNKTIPEVYLTRLLATKGTIQKFVDD
FFSIILTVNEELPPAVKWLFDLLDEAARRHDIADTDIVHAWKSNCLPLRF
WVNFIKNPDFIFDVNKTYSVDSCLSVIAQTFMDACSTSEHRLGKDSPSNK
LLFAKDIPNYRIMVKEFYRDVSRLPQISDQEMSTAMQQLSVRQNEEFDTI
SALKELYIYITKYKDQIMESLETDINCRKMHLSRKLGNVAATLDGDCTSN
C*

RE22882.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
PlexB-PB 2051 CG17245-PB 1..2051 1..2051 10767 100 Plus
PlexB-PA 2051 CG17245-PA 1..2051 1..2051 10767 100 Plus
PlexA-PA 1945 CG11081-PA 4..1938 14..2039 2855 35.2 Plus
PlexA-PF 1928 CG11081-PF 4..1921 14..2039 2852 35.3 Plus
PlexA-PC 1505 CG11081-PC 3..1498 455..2039 2323 36.1 Plus