BDGP Sequence Production Resources |
Search the DGRC for RE22911
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 229 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Ibf2-RA |
Protein status: | RE22911.pep: gold |
Preliminary Size: | 620 |
Sequenced Size: | 685 |
Gene | Date | Evidence |
---|---|---|
CG9740 | 2001-12-14 | Blastp of sequenced clone |
CG9740 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9740 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9740 | 2008-04-29 | Release 5.5 accounting |
CG9740 | 2008-08-15 | Release 5.9 accounting |
CG9740 | 2008-12-18 | 5.12 accounting |
685 bp (685 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071174
> RE22911.complete AACACAAACCGTATGTAAAAATGTCGCAAGCAAAAAAGGCCAAGCGACCC TCGGGCCTTTCGAAGGATGAAACTTGGAAGAAACTGGGCTTTCTACCCGC GTTCAAGGGCGGCAAGGATGGGGAGCCGAAGAAGTACCGAGCGCTGTGCA CCCACTGTCGGAAATGCCAATCAAACACCAGCATAGACAGGCTGATTATC CATAGGAAGTCATGTCTCAAGTTCCGGGAGGATCTAACCGCTGAATTCGG TATTAAGGTGGAGGCTACGGACGCCGCTCCGGCAGAACAGAGCTCTTCCG GCTCCACAATTGACTTCACTTCGAATATTCTACTGGACAAACTGATCGAC GAGGATGATAGCAGTGCACGCAATCAGGAATCCAACTTGGTGAGCTACTT GACCGATCTGGATCAACTGGTGATCCCGTCATCCGACGCCAATCGACTGC AGAAGGATCTGATCAAGGCGGAAACGGAGTATCTGGTGGTCAAATCCGAG TACTTTACCAAGATGAACGAGATATCCGAACTGAAACGCACCGTCACCTT GTTGGAGGCGAAAAAGACACAGCTGGAGATCGCCAAACTGCGTGCTGAAT GCGAGTAGCCTAAGCTTTTTAAGTACACTACATTTTAAATTTCTTGAGAA TATACAAATTTATTTAGACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9740-RA | 753 | CG9740-RA | 42..709 | 1..668 | 3340 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3798..3847 | 668..618 | 108 | 70.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5083502..5083965 | 206..669 | 99 | <- | Minus |
chr3R | 5084033..5084237 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..588 | 21..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..588 | 21..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..588 | 21..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..588 | 21..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ibf2-RA | 1..588 | 21..608 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..667 | 1..667 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 42..708 | 1..667 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 42..708 | 1..667 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9740-RA | 1..667 | 1..667 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ibf2-RA | 42..708 | 1..667 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9257725..9258188 | 206..669 | 99 | <- | Minus |
3R | 9258256..9258460 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9257725..9258188 | 206..669 | 99 | <- | Minus |
3R | 9258256..9258460 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9257725..9258188 | 206..669 | 99 | <- | Minus |
3R | 9258256..9258460 | 1..205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5083978..5084182 | 1..205 | 100 | Minus | |
arm_3R | 5083447..5083910 | 206..669 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8998556..8999019 | 206..669 | 99 | <- | Minus |
3R | 8999087..8999291 | 1..205 | 100 | Minus |
Translation from 2 to 607
> RE22911.hyp HKPYVKMSQAKKAKRPSGLSKDETWKKLGFLPAFKGGKDGEPKKYRALCT HCRKCQSNTSIDRLIIHRKSCLKFREDLTAEFGIKVEATDAAPAEQSSSG STIDFTSNILLDKLIDEDDSSARNQESNLVSYLTDLDQLVIPSSDANRLQ KDLIKAETEYLVVKSEYFTKMNEISELKRTVTLLEAKKTQLEIAKLRAEC E*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ibf2-PA | 195 | CG9740-PA | 1..195 | 7..201 | 985 | 100 | Plus |
Translation from 20 to 607
> RE22911.pep MSQAKKAKRPSGLSKDETWKKLGFLPAFKGGKDGEPKKYRALCTHCRKCQ SNTSIDRLIIHRKSCLKFREDLTAEFGIKVEATDAAPAEQSSSGSTIDFT SNILLDKLIDEDDSSARNQESNLVSYLTDLDQLVIPSSDANRLQKDLIKA ETEYLVVKSEYFTKMNEISELKRTVTLLEAKKTQLEIAKLRAECE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18423-PA | 204 | GF18423-PA | 8..204 | 3..195 | 533 | 62 | Plus |
Dana\GF24686-PA | 144 | GF24686-PA | 4..144 | 62..195 | 350 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17388-PA | 195 | GG17388-PA | 1..195 | 1..195 | 952 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ibf2-PA | 195 | CG9740-PA | 1..195 | 1..195 | 985 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13548-PA | 184 | GL13548-PA | 2..184 | 6..195 | 512 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22000-PA | 184 | GA22000-PA | 2..184 | 6..195 | 512 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26276-PA | 195 | GM26276-PA | 1..195 | 1..195 | 1005 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20811-PA | 195 | GD20811-PA | 1..195 | 1..195 | 1013 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22751-PA | 195 | GK22751-PA | 15..195 | 18..195 | 405 | 45.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24792-PA | 195 | GE24792-PA | 1..195 | 1..195 | 932 | 91.8 | Plus |