Clone RE22927 Report

Search the DGRC for RE22927

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:229
Well:27
Vector:pFlc-1
Associated Gene/TranscriptCG17163-RA
Protein status:RE22927.pep: gold
Preliminary Size:581
Sequenced Size:1699

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17163 2001-12-14 Blastp of sequenced clone
CG17163 2002-01-01 Sim4 clustering to Release 2
CG17163 2003-01-01 Sim4 clustering to Release 3
CG17163 2008-04-29 Release 5.5 accounting
CG17163 2008-08-15 Release 5.9 accounting
CG41293 2008-08-15 Release 5.9 accounting
CG17163 2008-12-18 5.12 accounting
CG41293 2008-12-18 5.12 accounting

Clone Sequence Records

RE22927.complete Sequence

1699 bp (1699 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071175

> RE22927.complete
ACTTTGAAAAAGTTTTTACAATTTAAAACACAAAGTCTTATAGAAATAAA
GATTTTTGGGTGTTTCATATACAACTGCACCAATTTCGCCCAAGCAAGAT
TTCGTGGCTTTGCGTATCTCTCGCGTATTAATGTACATGTATATGTACTA
CTTAGGGATGAAGACGCTTAAAGCGCAGCCTGCCCGAATGAACAGGTTAA
AAAACAGTACGAGTTTACCTAAAGGAGGACTGCATTAAAGGCACAGCCTA
CAGCTAGTTCAATTCAATTAATGCATTTTTTGCTCAAAACACATGTACAT
TTGCTTACACATGCATTGCGCGATAAGCTGTTTAAAAATTGTTTCTGTTA
GCTGGTCGCACCTGGCCACACAGTCGAAAAGCCGTGCGAAAATCGAGAAA
TTCATAAAACCCGGAGGATATGCCAGTGGTTATTGCGGTGTAATCCTCCG
GACCGCCATGCTGTTGTGCTGTGCGGATTGTAGCGGCATTTGTCAGTAGC
AGCTGTTGCAGTTGCCTTACGCACAAAAGTGCGAAAAGGATAGTCACGAT
GACACCCTTTGATGACTTTGTCTATCTAATCAATCATGTGCTGCTGGGCG
AGGAGCCGACCATCGAGGACTTCATACTGCTGGTAGGCACCCTGGTGGCA
TTTATAGCATTTATCCTTTGGTGCTGCTTCCCCATACAACCTAAGCAGGA
GCGTGGCCCCCATCGCCAATTCACCTGCAAGATTATCCAGAATCCCATTA
AGGCCTTTGACGCCTCCACCAGCACCGACGACGCACCCATTCCGGGAGGT
GGCTCCGGAATTGGCAGCTCCATGTCCAACATGCAGTACAATGGTAGCGG
AAGCTATAGCAAGAATGGTACTGTTGCCATGCACAATTACTACGTTAAGA
ACGGTCACCATTGCTGCACCTAATAATGGGCATTTCGACTAGCGGATTGA
AAATGTCCTGAGCTGGACAGCGTGTTAGTTACCATTTAGTGAGCACAGCC
ATCTATATACGGAAGCATATTAATTAAGCTTTGTGCCAATGGGTTAGGAG
GCAGCTTAAAGTTGCCATTTCGCATTTGCAGCATGTTTGGAATTTCTGAA
TTGTAATTGCTCAGACTGATTTGTTTATGGAACGTAGAAGGGTTGAGGAG
AATAAGGAAGAAATGATGGGACAGGTGGCACGAGCATACTGTGCAGCCTC
CAAGAAGCCCCTGGAAGTTTCAAAGACTTCCTTGATTTCTCTATATGTTG
TATGCATTTGTTGGAATACCAGATGTAGTATGCGTACTGTGTAAAAAATA
TTGGGCGTACAAACCAATTAATTCTAAGTATTTTTATGTGTAAACGATTT
GATTAGTCCCAGAGAAACTCCAAGACAACCCAATGCGTGCAAACAAAAAC
AAAGCCCTTTATTGAACTTATTTATATTTAGTGGTAATGGGGAAATAAAG
TTTCTCCTTATATATTTACAAATGTACTTATATATCTTTAAGATAAATAG
TGTACACGCCTAGATACACTCCAATTAATTAACTTTGGGTATCGTTCTAC
GAATTTTGCATACTGGATGTGTATTAAGGTGTATTTGATCTCATTCAATG
ATATTATTTGTGATGTAACAACTTCAAGGTAATTTCAATTATTCCCCTAA
ATGAAACTAAAAACCTAACGACAAACCGCCACCCAAAAAAAAAAAAAAA

RE22927.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-RA 1781 CG17163-RA 32..1717 1..1686 8415 99.9 Plus
CG17163.a 1778 CG17163.a 32..1714 1..1686 8345 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrXHet 204175 chrXHet 59746..60736 1684..694 4940 99.9 Minus
chrXHet 204175 chrXHet 60945..61552 608..1 3010 99.7 Minus
chr2L 23010047 chr2L 21730228..21730701 1491..1017 1950 94.5 Minus
chr2L 23010047 chr2L 21729995..21730169 1683..1508 740 96 Minus
chrXHet 204175 chrXHet 60791..60878 695..608 410 97.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23080869..23081861 1686..694 4965 100 Minus
X 23542271 X 23082070..23082677 608..1 3025 99.8 Minus
2L 23513712 2L 21731708..21732185 1495..1017 1955 94.4 Minus
2L 23513712 2L 21731473..21731654 1690..1508 760 95.6 Minus
X 23542271 X 23081916..23082003 695..608 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 23065961..23066953 1686..694 4965 100 Minus
X 23527363 X 23067162..23067769 608..1 3025 99.8 Minus
2L 23513712 2L 21731708..21732185 1495..1017 1965 94.3 Minus
2L 23513712 2L 21731473..21731654 1690..1508 770 95.6 Minus
X 23527363 X 23067008..23067095 695..608 440 100 Minus
Blast to na_te.dros performed 2019-03-15 22:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 171..390 1618..1408 147 58.1 Minus

RE22927.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:36 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
chrXHet 59746..60734 696..1684 99 <- Minus
chrXHet 60791..60877 609..695 97 <- Minus
chrXHet 60945..61552 1..608 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:53 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 549..923 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:28 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 549..923 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:52 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 549..923 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:30:58 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 549..923 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:42 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 1..375 549..923 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:34:49 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 32..1715 1..1684 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:27 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 32..1715 1..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:52 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 33..1716 1..1684 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:30:58 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 32..1715 1..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:42 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
CG17163-RA 33..1716 1..1684 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:36 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
X 23080871..23081859 696..1684 100 <- Minus
X 23081916..23082002 609..695 100 <- Minus
X 23082070..23082677 1..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:36 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
X 23080871..23081859 696..1684 100 <- Minus
X 23081916..23082002 609..695 100 <- Minus
X 23082070..23082677 1..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:36 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
X 23080871..23081859 696..1684 100 <- Minus
X 23081916..23082002 609..695 100 <- Minus
X 23082070..23082677 1..608 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:52 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 59689..60677 696..1684 100 <- Minus
XHet 60734..60820 609..695 100 <- Minus
XHet 60888..61495 1..608 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:24 Download gff for RE22927.complete
Subject Subject Range Query Range Percent Splice Strand
X 23065963..23066951 696..1684 100 <- Minus
X 23067008..23067094 609..695 100 <- Minus
X 23067162..23067769 1..608 99   Minus

RE22927.pep Sequence

Translation from 548 to 922

> RE22927.pep
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCT*

RE22927.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22150-PA 131 GF22150-PA 1..131 1..124 465 78 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17496-PA 125 GG17496-PA 1..125 1..124 628 95.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12665-PA 125 GH12665-PA 1..125 1..124 469 74.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-PA 124 CG17163-PA 1..124 1..124 681 100 Plus
CG17163-PB 123 CG17163-PB 1..123 1..124 664 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16244-PA 141 GI16244-PA 1..141 1..124 456 66.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18234-PA 109 GL18234-PA 1..81 1..82 396 92.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27908-PA 143 GA27908-PA 1..143 1..124 528 75.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13287-PA 127 GM13287-PA 1..127 1..124 655 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15472-PA 127 GD15472-PA 1..127 1..124 655 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16709-PA 141 GJ16709-PA 1..141 1..124 482 72.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25339-PA 130 GK25339-PA 1..130 1..124 484 71.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15253-PA 127 GE15253-PA 1..127 1..124 657 97.6 Plus

RE22927.hyp Sequence

Translation from 548 to 922

> RE22927.hyp
MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ
ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS
GSYSKNGTVAMHNYYVKNGHHCCT*

RE22927.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17163-PA 124 CG17163-PA 1..124 1..124 681 100 Plus
CG17163-PB 123 CG17163-PB 1..123 1..124 664 99.2 Plus