BDGP Sequence Production Resources |
Search the DGRC for RE22927
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 229 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG17163-RA |
Protein status: | RE22927.pep: gold |
Preliminary Size: | 581 |
Sequenced Size: | 1699 |
Gene | Date | Evidence |
---|---|---|
CG17163 | 2001-12-14 | Blastp of sequenced clone |
CG17163 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17163 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17163 | 2008-04-29 | Release 5.5 accounting |
CG17163 | 2008-08-15 | Release 5.9 accounting |
CG41293 | 2008-08-15 | Release 5.9 accounting |
CG17163 | 2008-12-18 | 5.12 accounting |
CG41293 | 2008-12-18 | 5.12 accounting |
1699 bp (1699 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071175
> RE22927.complete ACTTTGAAAAAGTTTTTACAATTTAAAACACAAAGTCTTATAGAAATAAA GATTTTTGGGTGTTTCATATACAACTGCACCAATTTCGCCCAAGCAAGAT TTCGTGGCTTTGCGTATCTCTCGCGTATTAATGTACATGTATATGTACTA CTTAGGGATGAAGACGCTTAAAGCGCAGCCTGCCCGAATGAACAGGTTAA AAAACAGTACGAGTTTACCTAAAGGAGGACTGCATTAAAGGCACAGCCTA CAGCTAGTTCAATTCAATTAATGCATTTTTTGCTCAAAACACATGTACAT TTGCTTACACATGCATTGCGCGATAAGCTGTTTAAAAATTGTTTCTGTTA GCTGGTCGCACCTGGCCACACAGTCGAAAAGCCGTGCGAAAATCGAGAAA TTCATAAAACCCGGAGGATATGCCAGTGGTTATTGCGGTGTAATCCTCCG GACCGCCATGCTGTTGTGCTGTGCGGATTGTAGCGGCATTTGTCAGTAGC AGCTGTTGCAGTTGCCTTACGCACAAAAGTGCGAAAAGGATAGTCACGAT GACACCCTTTGATGACTTTGTCTATCTAATCAATCATGTGCTGCTGGGCG AGGAGCCGACCATCGAGGACTTCATACTGCTGGTAGGCACCCTGGTGGCA TTTATAGCATTTATCCTTTGGTGCTGCTTCCCCATACAACCTAAGCAGGA GCGTGGCCCCCATCGCCAATTCACCTGCAAGATTATCCAGAATCCCATTA AGGCCTTTGACGCCTCCACCAGCACCGACGACGCACCCATTCCGGGAGGT GGCTCCGGAATTGGCAGCTCCATGTCCAACATGCAGTACAATGGTAGCGG AAGCTATAGCAAGAATGGTACTGTTGCCATGCACAATTACTACGTTAAGA ACGGTCACCATTGCTGCACCTAATAATGGGCATTTCGACTAGCGGATTGA AAATGTCCTGAGCTGGACAGCGTGTTAGTTACCATTTAGTGAGCACAGCC ATCTATATACGGAAGCATATTAATTAAGCTTTGTGCCAATGGGTTAGGAG GCAGCTTAAAGTTGCCATTTCGCATTTGCAGCATGTTTGGAATTTCTGAA TTGTAATTGCTCAGACTGATTTGTTTATGGAACGTAGAAGGGTTGAGGAG AATAAGGAAGAAATGATGGGACAGGTGGCACGAGCATACTGTGCAGCCTC CAAGAAGCCCCTGGAAGTTTCAAAGACTTCCTTGATTTCTCTATATGTTG TATGCATTTGTTGGAATACCAGATGTAGTATGCGTACTGTGTAAAAAATA TTGGGCGTACAAACCAATTAATTCTAAGTATTTTTATGTGTAAACGATTT GATTAGTCCCAGAGAAACTCCAAGACAACCCAATGCGTGCAAACAAAAAC AAAGCCCTTTATTGAACTTATTTATATTTAGTGGTAATGGGGAAATAAAG TTTCTCCTTATATATTTACAAATGTACTTATATATCTTTAAGATAAATAG TGTACACGCCTAGATACACTCCAATTAATTAACTTTGGGTATCGTTCTAC GAATTTTGCATACTGGATGTGTATTAAGGTGTATTTGATCTCATTCAATG ATATTATTTGTGATGTAACAACTTCAAGGTAATTTCAATTATTCCCCTAA ATGAAACTAAAAACCTAACGACAAACCGCCACCCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrXHet | 204175 | chrXHet | 59746..60736 | 1684..694 | 4940 | 99.9 | Minus |
chrXHet | 204175 | chrXHet | 60945..61552 | 608..1 | 3010 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 21730228..21730701 | 1491..1017 | 1950 | 94.5 | Minus |
chr2L | 23010047 | chr2L | 21729995..21730169 | 1683..1508 | 740 | 96 | Minus |
chrXHet | 204175 | chrXHet | 60791..60878 | 695..608 | 410 | 97.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 23080869..23081861 | 1686..694 | 4965 | 100 | Minus |
X | 23542271 | X | 23082070..23082677 | 608..1 | 3025 | 99.8 | Minus |
2L | 23513712 | 2L | 21731708..21732185 | 1495..1017 | 1955 | 94.4 | Minus |
2L | 23513712 | 2L | 21731473..21731654 | 1690..1508 | 760 | 95.6 | Minus |
X | 23542271 | X | 23081916..23082003 | 695..608 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 23065961..23066953 | 1686..694 | 4965 | 100 | Minus |
X | 23527363 | X | 23067162..23067769 | 608..1 | 3025 | 99.8 | Minus |
2L | 23513712 | 2L | 21731708..21732185 | 1495..1017 | 1965 | 94.3 | Minus |
2L | 23513712 | 2L | 21731473..21731654 | 1690..1508 | 770 | 95.6 | Minus |
X | 23527363 | X | 23067008..23067095 | 695..608 | 440 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 171..390 | 1618..1408 | 147 | 58.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrXHet | 59746..60734 | 696..1684 | 99 | <- | Minus |
chrXHet | 60791..60877 | 609..695 | 97 | <- | Minus |
chrXHet | 60945..61552 | 1..608 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 1..375 | 549..923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 1..375 | 549..923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 1..375 | 549..923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 1..375 | 549..923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 1..375 | 549..923 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 32..1715 | 1..1684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 32..1715 | 1..1684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 33..1716 | 1..1684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 32..1715 | 1..1684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17163-RA | 33..1716 | 1..1684 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23080871..23081859 | 696..1684 | 100 | <- | Minus |
X | 23081916..23082002 | 609..695 | 100 | <- | Minus |
X | 23082070..23082677 | 1..608 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23080871..23081859 | 696..1684 | 100 | <- | Minus |
X | 23081916..23082002 | 609..695 | 100 | <- | Minus |
X | 23082070..23082677 | 1..608 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23080871..23081859 | 696..1684 | 100 | <- | Minus |
X | 23081916..23082002 | 609..695 | 100 | <- | Minus |
X | 23082070..23082677 | 1..608 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XHet | 59689..60677 | 696..1684 | 100 | <- | Minus |
XHet | 60734..60820 | 609..695 | 100 | <- | Minus |
XHet | 60888..61495 | 1..608 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23065963..23066951 | 696..1684 | 100 | <- | Minus |
X | 23067008..23067094 | 609..695 | 100 | <- | Minus |
X | 23067162..23067769 | 1..608 | 99 | Minus |
Translation from 548 to 922
> RE22927.pep MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS GSYSKNGTVAMHNYYVKNGHHCCT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22150-PA | 131 | GF22150-PA | 1..131 | 1..124 | 465 | 78 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17496-PA | 125 | GG17496-PA | 1..125 | 1..124 | 628 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12665-PA | 125 | GH12665-PA | 1..125 | 1..124 | 469 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17163-PA | 124 | CG17163-PA | 1..124 | 1..124 | 681 | 100 | Plus |
CG17163-PB | 123 | CG17163-PB | 1..123 | 1..124 | 664 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16244-PA | 141 | GI16244-PA | 1..141 | 1..124 | 456 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18234-PA | 109 | GL18234-PA | 1..81 | 1..82 | 396 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27908-PA | 143 | GA27908-PA | 1..143 | 1..124 | 528 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13287-PA | 127 | GM13287-PA | 1..127 | 1..124 | 655 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15472-PA | 127 | GD15472-PA | 1..127 | 1..124 | 655 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16709-PA | 141 | GJ16709-PA | 1..141 | 1..124 | 482 | 72.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25339-PA | 130 | GK25339-PA | 1..130 | 1..124 | 484 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15253-PA | 127 | GE15253-PA | 1..127 | 1..124 | 657 | 97.6 | Plus |
Translation from 548 to 922
> RE22927.hyp MTPFDDFVYLINHVLLGEEPTIEDFILLVGTLVAFIAFILWCCFPIQPKQ ERGPHRQFTCKIIQNPIKAFDASTSTDDAPIPGGGSGIGSSMSNMQYNGS GSYSKNGTVAMHNYYVKNGHHCCT*