Clone RE22983 Report

Search the DGRC for RE22983

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:229
Well:83
Vector:pFlc-1
Associated Gene/TranscriptMiro-RD
Protein status:RE22983.pep: gold
Sequenced Size:3744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5410 2003-01-01 Sim4 clustering to Release 3
CG5410 2004-08-13 Blastp of sequenced clone
Miro 2008-04-29 Release 5.5 accounting
Miro 2008-08-15 Release 5.9 accounting
Miro 2008-12-18 5.12 accounting

Clone Sequence Records

RE22983.complete Sequence

3744 bp (3744 high quality bases) assembled on 2004-08-13

GenBank Submission: BT016011

> RE22983.complete
CTGATTGTGCACAGAGGACGAGTAGCCGCCGTACGAATGGTGGTGGCCGC
TGCGTGGGGAGCACGTTGTGGGGGTCAGGTCATCTGTGGTGGTGGTGTCG
TCGTCGCCGTCGGGTGAGCTGCCCGGACTACGGCGATTCGATGAGGAGCC
TCCACCGGCGGCAGATGAACCGCCGGCAACAACGGCAGCAACGTTTGAGG
CGCTCGACGAGCGGTGAGTGGACTGGCGACCACCGAGTCCTCCGCCGGAT
GATCCTGCCCCGCTGCTGGACTTTATTGGTGACTTGGTGCTGCTGCTGCT
GGCGCTGGAGGAGGACGACTGGTTTTTAGTGCGTACCATCGATATCGATT
CCGCGCTGTCTGCGCGTCCAGCACTCCGGCCCCCTGCTCTCCTTGCCCTA
ACCCCGTGAAAGTTGCACGGGGAAATTATCCTTGTAAGCCAAATCGGTTG
GCCGTGGCACGCGTTTGTATCGATGCCGCACAAAAAAACAAACAAATCTC
GAATATTATTGTTGTACGTCGTTTGAGCTAGTGCTCATTTTGCTGATATC
CGAGAGTACTGATTTTCTTCCGCACTTACAACTCTCACTACGTTGAAAAT
TGAAGCTAAGCTCTGGAGTCCCAGCCAGTGCTGACCAACTATCGATTACC
AAATCTAGCGGGCAAGGTTGTGAAGTCAGACAAACAGGCAATTTCAAAGT
TTAAATGGTGGAATGTAACGGATGAAATATAATTTGGGAGACTTTCACCG
AAGTGCAGTATGGAGACATTCGTAATTGAAGAAAACATTTTGTGTCCTTT
ACAACATCCTTAACGGTTGGCTGATTTAGCGGAAAAACGCTAACTTGTCA
TATCGTAGAGATCCAGCTGTCAATAAAGTTACCAGACAGTTTCGGATCCG
ATGTTTTTGGATGGAAATATTTAAATTACGTGATCAATTTTAAGCAACTG
ATCGAAATAATAGTTTTGATTTGTTAAATTCGTAGAATTCAAACACAATT
GCCGGAAAATTGGGGAAAAATATCGCATTATTTGGCGGTCGCCTAGTGTG
GCAGCCCTGGTAGCTGGGTTGCGATATATCGACCTTGATACACCTACTGC
CATCCCCATCACTCTGGGTTGTTTTTTTTTGCGTTTTTGCATAACAAAAT
CCTAGAATTTCGGCCTAAACGCCAGCGATCTCTGACCAGCAGAGCACGAG
CACAGGAGCGGCATATCTCACTTGGAGAGCAGTCGGAATGGGACAGTACA
CGGCGTCGCAGCGCAAGAATGTTAGGATCCTGCTCGTCGGCGACGCCGGG
GTGGGTAAGACGTCGTTGATTCTGTCTCTGGTCAGTGAGGAGTACCCGGA
GGAGGTTCCGCCTAGGGCTGAGGAGATTACCATTCCGGCGAACGTGACGC
CCGAGCAGGTGCCCACCAGCATAGTTGACTTCTCGGCCGTGGAGCAGTCG
GAGGATGCCCTGGCCGCCGAAATTAACAAGGCGCACGTGGTGTGCATAGT
GTACGCCGTGGACGATGACGACACTTTGGATCGGATCACATCCCATTGGC
TGCCGCTCGTCCGGGCCAAGTGCAATCCCTCCCTGGACGGCGAGGGTGAT
GCCGAAGCGGAGGCGGAAGGAGACACACAACGAGAGCCCATTCGGAAGCC
AATCGTTCTGGTGGGTAACAAAATAGACCTCATCGAGTATTCCACCATGG
ACAGCGTGCTGGCCATCATGGAAGACTACCCCGAGATTGAGAGTTGCGTG
GAGTGCTCTGCCAAGTCGCTGCACAACATCTCCGAGATGTTTTACTACGC
CCAGAAGGCTGTGCTGCACCCGACTTCTCCCCTGTATATGATGGAAGAAC
AGGAGCTCACATCCGCCTGCAAGAAGTCGCTGGTGCGCATTTTCAAGATC
TGCGACATTGACGGGGACAATCTGTTGAACGATTACGAGCTGAATTTATT
CCAGCGACGCTGTTTCAACACACCACTCCAGCCGCAAATCCTTGATGAGG
TGAAGGCCGTGATACAGAAAAATGTGCCCGATGGCATATACAACGATGCG
GTCACCCTGAAGGGCTTCCTCTTCTTACACTGCCTTTTCATTCAGCGGGG
AAGGAACGAGACAACCTGGGCGGTGTTACGGCGCTTTGGCTATAACGACC
AGTTGGAGATGTGCCAGGAGTATCTTAGGCCACCGCTGAAAATACCGCCT
GGCAGCAGCACAGAACTCTCGCACCGCGGACAGCAGTTTCTGATTGCCGT
GTTTGAGCGCTATGATCGCGATGGCGACGGAGCCTTATCACCTGAGGAGC
ACAAGATGCTCTTCAGCACATGCCCGGCTGCTCCGTGGTCCTACTCCACC
GACATACGCAAGTCCTGCCCGATCAACGAGACAACTGGATGGGTGACACT
GCACGGGTGGCTATGTCGGTGGACACTGATGACGCTGATTGATGTGGTCA
AAACAATGGAGTATTTGGCCTATTTGGGCTTCAATGTTCATGAAAACGAC
AGCCAGTTGGCGGCAATTCACGTAACTCGAGAGCGCCGCATCGATTTGGC
CAAGCGCCAAAGCAGTCGGTCCGTTTACAAGTGTCATGTGATTGGACCAA
AGGGATCAGGAAAGACTGGAATGTGCAGGGGATTCCTGGTGGAGGATATG
CACAAACTAATCGGAAAAGAGTTTAAAACGAATGTGGTTAATTGCATCAA
CTCTGTGCAGGTGTATGGCCAGGAAAAGCACCTCATTCTGCGTGACATAG
ACGTCAGGCATGCCCTCGATCCCCTCCAGCCACAAGAAGTCAATTGCGAT
GTTGCCTGCCTAGTCTACGACTCATCTAATCCCCGTTCCTTTGAGTACGT
GGCCCGCATCTACATCAAGTATTATGCGGAGAGCAAGATTCCAGTGATGA
TAGTCGGCACCAAGTGCGACATGGACGAACGCCGGCAGGACTATCTAATG
CAGCCCTCTGAATTCTGTGACAAGTACAAGTTGCTGCCTCCGCATCTCTT
CAGCCTGAAAACCAACAAAAAAGAACTGTATACCAAGCTGGCCACAATGG
CAGCGTTTCCTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAG
CTGTGGTTAAAGGCGGGACTAGGAGTGGCCGCAGCTACCATGCTGGGATT
TATAGTGCTGAAAACGATAAGTGCTGCCGGAGCCCACACCCGTTAGGGGA
ATTCACTAGGATAAGGGGACGGGCTTAACACACGATTACCACGGACACGT
TGAAGTTTGACAAATTCATGTATCTTATTAATTATTTAATTGCTTGGTAC
TGTAAATCCAAATTTATTGTTACGAAAACTAAAGCAAACTATGAACGGAC
ACATGCCGATGCTCTCATTCCTGACTTGTAAATACACTCATCAAGTACAC
TAGCAGGAATTGGGCTGGAGCAGTGGCCAGTCGAGCACATTGTGTACGCT
GCATTTCTAATCGTATATTAACTTACATAAACCATGTTCTCTCTGATAAG
TCAAATAAGCTATTGTTACCAGCATATTCGAGTAACGAAACAACCAATAT
CGTGCATAGCTGATAGTGATATGTACACGTACTGCGTTCTATATAAACCA
ATATATACGACATCTAGAGAATCACCGGGTTCGGTGATATCGCACTTTTG
TAAATACGCGCAAATCCCCTAGTATGAGCAATAAACCTATCTATATGTGT
GGATTAACATATAGTGATATTTAATGACAAAAAAAAAAAAAAAA

RE22983.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Miro.a 3778 Miro.a 1..3726 1..3726 18615 99.9 Plus
Miro.b 3817 Miro.b 1..3062 1..3062 15295 99.9 Plus
Miro.c 3029 Miro.c 1..2274 789..3062 11370 100 Plus
Miro.b 3817 Miro.b 3100..3765 3061..3726 3330 100 Plus
Miro.c 3029 Miro.c 2312..2977 3061..3726 3330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19859000..19860206 3060..1854 6020 99.9 Minus
chr3R 27901430 chr3R 19860317..19861392 1855..780 5365 99.9 Minus
chr3R 27901430 chr3R 19861453..19862233 781..1 3860 99.6 Minus
chr3R 27901430 chr3R 19857749..19858414 3726..3061 3270 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24035614..24036820 3060..1854 6035 100 Minus
3R 32079331 3R 24036931..24038006 1855..780 5380 100 Minus
3R 32079331 3R 24038067..24038847 781..1 3890 99.9 Minus
3R 32079331 3R 24034364..24035029 3726..3061 3330 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23776445..23777651 3060..1854 6035 100 Minus
3R 31820162 3R 23777762..23778837 1855..780 5380 100 Minus
3R 31820162 3R 23778898..23779678 781..1 3890 99.8 Minus
3R 31820162 3R 23775195..23775860 3726..3061 3330 100 Minus
Blast to na_te.dros performed 2019-03-15 16:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6769..6875 3365..3256 117 63.4 Minus
Stalker 7256 Stalker STALKER 7256bp 6661..6767 3365..3256 117 63.4 Minus

RE22983.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:22:47 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19857747..19858414 3061..3728 99 <- Minus
chr3R 19859000..19860204 1856..3060 99 <- Minus
chr3R 19860317..19861390 782..1855 99 <- Minus
chr3R 19861453..19862233 1..781 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:57 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..1959 1238..3196 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:32:31 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..1959 1238..3196 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:00:46 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..1959 1238..3196 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:16:24 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..1959 1238..3196 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:04 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..1959 1238..3196 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:37:48 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..2865 864..3728 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:32:31 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..2865 864..3728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:46 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RF 1..3063 1..3064 99 <- Plus
Miro-RF 3128..3791 3065..3728 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:16:25 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RD 1..2865 864..3728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:04 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
Miro-RF 1..3063 1..3064 99 <- Plus
Miro-RF 3128..3791 3065..3728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:47 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24034362..24035029 3061..3728 99 <- Minus
3R 24035614..24036818 1856..3060 100 <- Minus
3R 24036931..24038004 782..1855 100 <- Minus
3R 24038067..24038847 1..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:47 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24034362..24035029 3061..3728 99 <- Minus
3R 24035614..24036818 1856..3060 100 <- Minus
3R 24036931..24038004 782..1855 100 <- Minus
3R 24038067..24038847 1..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:22:47 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24034362..24035029 3061..3728 99 <- Minus
3R 24035614..24036818 1856..3060 100 <- Minus
3R 24036931..24038004 782..1855 100 <- Minus
3R 24038067..24038847 1..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:46 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19860084..19860751 3061..3728 99 <- Minus
arm_3R 19861336..19862540 1856..3060 100 <- Minus
arm_3R 19862653..19863726 782..1855 100 <- Minus
arm_3R 19863789..19864569 1..781 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:53:21 Download gff for RE22983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23777762..23778835 782..1855 100 <- Minus
3R 23775193..23775860 3061..3728 99 <- Minus
3R 23776445..23777649 1856..3060 100 <- Minus
3R 23778898..23779678 1..781 99   Minus

RE22983.pep Sequence

Translation from 1237 to 3195

> RE22983.pep
MGQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIP
ANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRI
TSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIE
YSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLY
MMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQ
ILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRF
GYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGAL
SPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTL
IDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCH
VIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLI
LRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESK
IPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTK
LATMAAFPHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTISAAGAH
TR*

RE22983.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17969-PA 678 GF17969-PA 1..678 1..652 3315 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12381-PA 673 GG12381-PA 1..673 1..652 3449 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19102-PA 659 GH19102-PA 1..659 1..652 3184 88.6 Plus
Dgri\GH19274-PA 195 GH19274-PA 2..182 7..195 147 26.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Miro-PD 652 CG5410-PD 1..652 1..652 3431 100 Plus
Miro-PC 665 CG5410-PC 1..665 1..652 3407 98 Plus
Miro-PF 673 CG5410-PF 1..673 1..652 3399 96.9 Plus
Miro-PE 673 CG5410-PE 1..673 1..652 3399 96.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23452-PA 664 GI23452-PA 1..664 1..652 3144 87.4 Plus
Dmoj\GI22015-PA 195 GI22015-PA 2..182 7..195 147 26.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24154-PA 670 GL24154-PA 1..670 1..652 3159 88.4 Plus
Dper\GL13704-PA 195 GL13704-PA 2..182 7..195 150 27.1 Plus
Dper\GL20555-PA 192 GL20555-PA 7..180 13..194 147 26.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18862-PB 649 GA18862-PB 1..649 1..652 3185 91 Plus
Dpse\GA18862-PA 670 GA18862-PA 1..670 1..652 3151 88.1 Plus
Dpse\GA18989-PA 195 GA18989-PA 2..182 7..195 150 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23519-PA 673 GM23519-PA 1..673 1..652 3470 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18328-PA 824 GD18328-PA 358..824 207..652 2416 94.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22573-PA 663 GJ22573-PA 1..663 1..652 3147 87.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13082-PA 676 GK13082-PA 1..676 1..652 3114 86 Plus
Dwil\GK11760-PA 195 GK11760-PA 2..182 7..195 147 26.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10835-PA 673 GE10835-PA 1..673 1..652 3455 95.5 Plus

RE22983.hyp Sequence

Translation from 1237 to 3195

> RE22983.hyp
MGQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIP
ANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRI
TSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIE
YSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLY
MMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQ
ILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRF
GYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGAL
SPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTL
IDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCH
VIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLI
LRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESK
IPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTK
LATMAAFPHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTISAAGAH
TR*

RE22983.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Miro-PD 652 CG5410-PD 1..652 1..652 3431 100 Plus
Miro-PC 665 CG5410-PC 1..665 1..652 3407 98 Plus
Miro-PF 673 CG5410-PF 1..673 1..652 3399 96.9 Plus
Miro-PE 673 CG5410-PE 1..673 1..652 3399 96.9 Plus