BDGP Sequence Production Resources |
Search the DGRC for RE22983
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 229 |
Well: | 83 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Miro-RD |
Protein status: | RE22983.pep: gold |
Sequenced Size: | 3744 |
Gene | Date | Evidence |
---|---|---|
CG5410 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5410 | 2004-08-13 | Blastp of sequenced clone |
Miro | 2008-04-29 | Release 5.5 accounting |
Miro | 2008-08-15 | Release 5.9 accounting |
Miro | 2008-12-18 | 5.12 accounting |
3744 bp (3744 high quality bases) assembled on 2004-08-13
GenBank Submission: BT016011
> RE22983.complete CTGATTGTGCACAGAGGACGAGTAGCCGCCGTACGAATGGTGGTGGCCGC TGCGTGGGGAGCACGTTGTGGGGGTCAGGTCATCTGTGGTGGTGGTGTCG TCGTCGCCGTCGGGTGAGCTGCCCGGACTACGGCGATTCGATGAGGAGCC TCCACCGGCGGCAGATGAACCGCCGGCAACAACGGCAGCAACGTTTGAGG CGCTCGACGAGCGGTGAGTGGACTGGCGACCACCGAGTCCTCCGCCGGAT GATCCTGCCCCGCTGCTGGACTTTATTGGTGACTTGGTGCTGCTGCTGCT GGCGCTGGAGGAGGACGACTGGTTTTTAGTGCGTACCATCGATATCGATT CCGCGCTGTCTGCGCGTCCAGCACTCCGGCCCCCTGCTCTCCTTGCCCTA ACCCCGTGAAAGTTGCACGGGGAAATTATCCTTGTAAGCCAAATCGGTTG GCCGTGGCACGCGTTTGTATCGATGCCGCACAAAAAAACAAACAAATCTC GAATATTATTGTTGTACGTCGTTTGAGCTAGTGCTCATTTTGCTGATATC CGAGAGTACTGATTTTCTTCCGCACTTACAACTCTCACTACGTTGAAAAT TGAAGCTAAGCTCTGGAGTCCCAGCCAGTGCTGACCAACTATCGATTACC AAATCTAGCGGGCAAGGTTGTGAAGTCAGACAAACAGGCAATTTCAAAGT TTAAATGGTGGAATGTAACGGATGAAATATAATTTGGGAGACTTTCACCG AAGTGCAGTATGGAGACATTCGTAATTGAAGAAAACATTTTGTGTCCTTT ACAACATCCTTAACGGTTGGCTGATTTAGCGGAAAAACGCTAACTTGTCA TATCGTAGAGATCCAGCTGTCAATAAAGTTACCAGACAGTTTCGGATCCG ATGTTTTTGGATGGAAATATTTAAATTACGTGATCAATTTTAAGCAACTG ATCGAAATAATAGTTTTGATTTGTTAAATTCGTAGAATTCAAACACAATT GCCGGAAAATTGGGGAAAAATATCGCATTATTTGGCGGTCGCCTAGTGTG GCAGCCCTGGTAGCTGGGTTGCGATATATCGACCTTGATACACCTACTGC CATCCCCATCACTCTGGGTTGTTTTTTTTTGCGTTTTTGCATAACAAAAT CCTAGAATTTCGGCCTAAACGCCAGCGATCTCTGACCAGCAGAGCACGAG CACAGGAGCGGCATATCTCACTTGGAGAGCAGTCGGAATGGGACAGTACA CGGCGTCGCAGCGCAAGAATGTTAGGATCCTGCTCGTCGGCGACGCCGGG GTGGGTAAGACGTCGTTGATTCTGTCTCTGGTCAGTGAGGAGTACCCGGA GGAGGTTCCGCCTAGGGCTGAGGAGATTACCATTCCGGCGAACGTGACGC CCGAGCAGGTGCCCACCAGCATAGTTGACTTCTCGGCCGTGGAGCAGTCG GAGGATGCCCTGGCCGCCGAAATTAACAAGGCGCACGTGGTGTGCATAGT GTACGCCGTGGACGATGACGACACTTTGGATCGGATCACATCCCATTGGC TGCCGCTCGTCCGGGCCAAGTGCAATCCCTCCCTGGACGGCGAGGGTGAT GCCGAAGCGGAGGCGGAAGGAGACACACAACGAGAGCCCATTCGGAAGCC AATCGTTCTGGTGGGTAACAAAATAGACCTCATCGAGTATTCCACCATGG ACAGCGTGCTGGCCATCATGGAAGACTACCCCGAGATTGAGAGTTGCGTG GAGTGCTCTGCCAAGTCGCTGCACAACATCTCCGAGATGTTTTACTACGC CCAGAAGGCTGTGCTGCACCCGACTTCTCCCCTGTATATGATGGAAGAAC AGGAGCTCACATCCGCCTGCAAGAAGTCGCTGGTGCGCATTTTCAAGATC TGCGACATTGACGGGGACAATCTGTTGAACGATTACGAGCTGAATTTATT CCAGCGACGCTGTTTCAACACACCACTCCAGCCGCAAATCCTTGATGAGG TGAAGGCCGTGATACAGAAAAATGTGCCCGATGGCATATACAACGATGCG GTCACCCTGAAGGGCTTCCTCTTCTTACACTGCCTTTTCATTCAGCGGGG AAGGAACGAGACAACCTGGGCGGTGTTACGGCGCTTTGGCTATAACGACC AGTTGGAGATGTGCCAGGAGTATCTTAGGCCACCGCTGAAAATACCGCCT GGCAGCAGCACAGAACTCTCGCACCGCGGACAGCAGTTTCTGATTGCCGT GTTTGAGCGCTATGATCGCGATGGCGACGGAGCCTTATCACCTGAGGAGC ACAAGATGCTCTTCAGCACATGCCCGGCTGCTCCGTGGTCCTACTCCACC GACATACGCAAGTCCTGCCCGATCAACGAGACAACTGGATGGGTGACACT GCACGGGTGGCTATGTCGGTGGACACTGATGACGCTGATTGATGTGGTCA AAACAATGGAGTATTTGGCCTATTTGGGCTTCAATGTTCATGAAAACGAC AGCCAGTTGGCGGCAATTCACGTAACTCGAGAGCGCCGCATCGATTTGGC CAAGCGCCAAAGCAGTCGGTCCGTTTACAAGTGTCATGTGATTGGACCAA AGGGATCAGGAAAGACTGGAATGTGCAGGGGATTCCTGGTGGAGGATATG CACAAACTAATCGGAAAAGAGTTTAAAACGAATGTGGTTAATTGCATCAA CTCTGTGCAGGTGTATGGCCAGGAAAAGCACCTCATTCTGCGTGACATAG ACGTCAGGCATGCCCTCGATCCCCTCCAGCCACAAGAAGTCAATTGCGAT GTTGCCTGCCTAGTCTACGACTCATCTAATCCCCGTTCCTTTGAGTACGT GGCCCGCATCTACATCAAGTATTATGCGGAGAGCAAGATTCCAGTGATGA TAGTCGGCACCAAGTGCGACATGGACGAACGCCGGCAGGACTATCTAATG CAGCCCTCTGAATTCTGTGACAAGTACAAGTTGCTGCCTCCGCATCTCTT CAGCCTGAAAACCAACAAAAAAGAACTGTATACCAAGCTGGCCACAATGG CAGCGTTTCCTCACCTGAGGCAATTCGGCCTGATGACGGAGGACCCCAAG CTGTGGTTAAAGGCGGGACTAGGAGTGGCCGCAGCTACCATGCTGGGATT TATAGTGCTGAAAACGATAAGTGCTGCCGGAGCCCACACCCGTTAGGGGA ATTCACTAGGATAAGGGGACGGGCTTAACACACGATTACCACGGACACGT TGAAGTTTGACAAATTCATGTATCTTATTAATTATTTAATTGCTTGGTAC TGTAAATCCAAATTTATTGTTACGAAAACTAAAGCAAACTATGAACGGAC ACATGCCGATGCTCTCATTCCTGACTTGTAAATACACTCATCAAGTACAC TAGCAGGAATTGGGCTGGAGCAGTGGCCAGTCGAGCACATTGTGTACGCT GCATTTCTAATCGTATATTAACTTACATAAACCATGTTCTCTCTGATAAG TCAAATAAGCTATTGTTACCAGCATATTCGAGTAACGAAACAACCAATAT CGTGCATAGCTGATAGTGATATGTACACGTACTGCGTTCTATATAAACCA ATATATACGACATCTAGAGAATCACCGGGTTCGGTGATATCGCACTTTTG TAAATACGCGCAAATCCCCTAGTATGAGCAATAAACCTATCTATATGTGT GGATTAACATATAGTGATATTTAATGACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Miro.a | 3778 | Miro.a | 1..3726 | 1..3726 | 18615 | 99.9 | Plus |
Miro.b | 3817 | Miro.b | 1..3062 | 1..3062 | 15295 | 99.9 | Plus |
Miro.c | 3029 | Miro.c | 1..2274 | 789..3062 | 11370 | 100 | Plus |
Miro.b | 3817 | Miro.b | 3100..3765 | 3061..3726 | 3330 | 100 | Plus |
Miro.c | 3029 | Miro.c | 2312..2977 | 3061..3726 | 3330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19859000..19860206 | 3060..1854 | 6020 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 19860317..19861392 | 1855..780 | 5365 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 19861453..19862233 | 781..1 | 3860 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 19857749..19858414 | 3726..3061 | 3270 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24035614..24036820 | 3060..1854 | 6035 | 100 | Minus |
3R | 32079331 | 3R | 24036931..24038006 | 1855..780 | 5380 | 100 | Minus |
3R | 32079331 | 3R | 24038067..24038847 | 781..1 | 3890 | 99.9 | Minus |
3R | 32079331 | 3R | 24034364..24035029 | 3726..3061 | 3330 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23776445..23777651 | 3060..1854 | 6035 | 100 | Minus |
3R | 31820162 | 3R | 23777762..23778837 | 1855..780 | 5380 | 100 | Minus |
3R | 31820162 | 3R | 23778898..23779678 | 781..1 | 3890 | 99.8 | Minus |
3R | 31820162 | 3R | 23775195..23775860 | 3726..3061 | 3330 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19857747..19858414 | 3061..3728 | 99 | <- | Minus |
chr3R | 19859000..19860204 | 1856..3060 | 99 | <- | Minus |
chr3R | 19860317..19861390 | 782..1855 | 99 | <- | Minus |
chr3R | 19861453..19862233 | 1..781 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..1959 | 1238..3196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..1959 | 1238..3196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..1959 | 1238..3196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..1959 | 1238..3196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..1959 | 1238..3196 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..2865 | 864..3728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..2865 | 864..3728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RF | 1..3063 | 1..3064 | 99 | <- | Plus |
Miro-RF | 3128..3791 | 3065..3728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RD | 1..2865 | 864..3728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Miro-RF | 1..3063 | 1..3064 | 99 | <- | Plus |
Miro-RF | 3128..3791 | 3065..3728 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24034362..24035029 | 3061..3728 | 99 | <- | Minus |
3R | 24035614..24036818 | 1856..3060 | 100 | <- | Minus |
3R | 24036931..24038004 | 782..1855 | 100 | <- | Minus |
3R | 24038067..24038847 | 1..781 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24034362..24035029 | 3061..3728 | 99 | <- | Minus |
3R | 24035614..24036818 | 1856..3060 | 100 | <- | Minus |
3R | 24036931..24038004 | 782..1855 | 100 | <- | Minus |
3R | 24038067..24038847 | 1..781 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24034362..24035029 | 3061..3728 | 99 | <- | Minus |
3R | 24035614..24036818 | 1856..3060 | 100 | <- | Minus |
3R | 24036931..24038004 | 782..1855 | 100 | <- | Minus |
3R | 24038067..24038847 | 1..781 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19860084..19860751 | 3061..3728 | 99 | <- | Minus |
arm_3R | 19861336..19862540 | 1856..3060 | 100 | <- | Minus |
arm_3R | 19862653..19863726 | 782..1855 | 100 | <- | Minus |
arm_3R | 19863789..19864569 | 1..781 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23777762..23778835 | 782..1855 | 100 | <- | Minus |
3R | 23775193..23775860 | 3061..3728 | 99 | <- | Minus |
3R | 23776445..23777649 | 1856..3060 | 100 | <- | Minus |
3R | 23778898..23779678 | 1..781 | 99 | Minus |
Translation from 1237 to 3195
> RE22983.pep MGQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIP ANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRI TSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIE YSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLY MMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQ ILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRF GYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGAL SPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTL IDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCH VIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLI LRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESK IPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTK LATMAAFPHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTISAAGAH TR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17969-PA | 678 | GF17969-PA | 1..678 | 1..652 | 3315 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12381-PA | 673 | GG12381-PA | 1..673 | 1..652 | 3449 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19102-PA | 659 | GH19102-PA | 1..659 | 1..652 | 3184 | 88.6 | Plus |
Dgri\GH19274-PA | 195 | GH19274-PA | 2..182 | 7..195 | 147 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Miro-PD | 652 | CG5410-PD | 1..652 | 1..652 | 3431 | 100 | Plus |
Miro-PC | 665 | CG5410-PC | 1..665 | 1..652 | 3407 | 98 | Plus |
Miro-PF | 673 | CG5410-PF | 1..673 | 1..652 | 3399 | 96.9 | Plus |
Miro-PE | 673 | CG5410-PE | 1..673 | 1..652 | 3399 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23452-PA | 664 | GI23452-PA | 1..664 | 1..652 | 3144 | 87.4 | Plus |
Dmoj\GI22015-PA | 195 | GI22015-PA | 2..182 | 7..195 | 147 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24154-PA | 670 | GL24154-PA | 1..670 | 1..652 | 3159 | 88.4 | Plus |
Dper\GL13704-PA | 195 | GL13704-PA | 2..182 | 7..195 | 150 | 27.1 | Plus |
Dper\GL20555-PA | 192 | GL20555-PA | 7..180 | 13..194 | 147 | 26.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18862-PB | 649 | GA18862-PB | 1..649 | 1..652 | 3185 | 91 | Plus |
Dpse\GA18862-PA | 670 | GA18862-PA | 1..670 | 1..652 | 3151 | 88.1 | Plus |
Dpse\GA18989-PA | 195 | GA18989-PA | 2..182 | 7..195 | 150 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23519-PA | 673 | GM23519-PA | 1..673 | 1..652 | 3470 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18328-PA | 824 | GD18328-PA | 358..824 | 207..652 | 2416 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22573-PA | 663 | GJ22573-PA | 1..663 | 1..652 | 3147 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13082-PA | 676 | GK13082-PA | 1..676 | 1..652 | 3114 | 86 | Plus |
Dwil\GK11760-PA | 195 | GK11760-PA | 2..182 | 7..195 | 147 | 26.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10835-PA | 673 | GE10835-PA | 1..673 | 1..652 | 3455 | 95.5 | Plus |
Translation from 1237 to 3195
> RE22983.hyp MGQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIP ANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRI TSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIE YSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLY MMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQ ILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRF GYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGAL SPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTL IDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCH VIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLI LRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESK IPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTK LATMAAFPHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTISAAGAH TR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Miro-PD | 652 | CG5410-PD | 1..652 | 1..652 | 3431 | 100 | Plus |
Miro-PC | 665 | CG5410-PC | 1..665 | 1..652 | 3407 | 98 | Plus |
Miro-PF | 673 | CG5410-PF | 1..673 | 1..652 | 3399 | 96.9 | Plus |
Miro-PE | 673 | CG5410-PE | 1..673 | 1..652 | 3399 | 96.9 | Plus |