Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE23003.complete Sequence
1574 bp (1574 high quality bases) assembled on 2004-12-16
GenBank Submission: BT021300
> RE23003.complete
ATCTTGAATATTCTATTTTGAGAGACACACTTATTTTGTATATTACCAAT
TGTTAATTCAAGTTTTAATATCTTCTCTTACATAAAATGTTCGTCAAAGT
GAAATTAGATGCCGAGGGAAACACAAGTGTGATGCCGGAAATGTTCGAGC
TCCACAATAATGCGACCATTGGTGAATTGAAGCAAAAACTGGAGGTAAAA
GTAGGTCTTCCCTTGGCTCGCCTAAACGTACAGAGTTTTCACAAGTCTCT
GGAAAACGATGAGTTTATTACAAATTTGCTCAGAATTCCGGATAAAAGCG
ATTATACTTATCCGTCGACAACGCTTAATGGTACAGCCTTTTCGCTGTAC
CACGAAAATTCCTTTGTAGGATTTCTCCAATTCTATACAATTCCAGAGGG
CAAGAGCCAACTGGATTTCCTTAACATGCCGAAGAGCTCTATGCTTCTGC
CAGTGGACAGGCTTCCGCAGTTTTGCGAGGCTTCGAACTCGCAAGATTCC
TCCGCATCCAGTGCGTCGAACCAGACGAACGCCAGCTTCGAATCCGCAAG
CACGAGCGCCAGCTCCGTAGCGCGAAAGACGAGAGTGTGCGCCTCCGATG
AGGAATCGGCTGCCAAAAGAATACGAAGCAACCAAGAGAACAGCGTGGTC
AAGGTGGTTCCGCAGCAGAATCTGCTCGCGGACAAACGAGCCGGCAGCAT
GGCTTCCATATTTGGTTCGAAGATCCACCTGATGAACTGCTGCAAGACGG
AGACCAGCCGCACAAGCTGCTCAGTGGAGCAGGCCGAGGAGTGCAAGGAG
AGGAAGAAGGACTGCTGCACGCCAAAGAATTGTCGCAAGAGGGATACTCG
GCCGCCGTATGCGAACACAATGCCCGAGAACCGACGTTACGCCTTGGTGA
TAACTAACCAGAGTTCGTGCTCGGATGGTGTGGACACTATCGCCCTAATG
GAGCACTTTCATTCAATATTCGAGGACAGTGGATCGAGCGTCAGCGATCT
CAATTTTAGTGAGTGTGCCTCAACGCAGACATTCGACTGCAACATGCTGG
TGGTCTGCGAGGATAACGAAACGGCCCAATGGGTCATCGAAGCAGTCGAA
GGTGTGGAGCCGCCCCACTCCTGCCAGCCCTTCATTAAGTTCTTCGATCT
AGTGAGGACGACCTTTGTCCTGCCCTTGGTCAGTCCGAATAAGTCGCTCT
GTGTGATCTTCGCATTACTGGAGTCACAGAACCCGGGCTTGAATACCGAC
AGATGGGCCGTCGTTAATCGCTCCACTTTGGACTGCCAAGACGTGGAGAG
GCAGGTCGCTCAATTCTGCGACAACGTCCTTATTGAGGTGTATATCGATG
AGGATAGCAGGGATTTCATCGCCGACCGGTGTTCCAAATTGCGATACTGT
TTCTGGCAACTTAAATTCGATTTTATATAGGACTTTTTGGGCTTTCCAAA
TTCACTGTTAACTTGTTAAGATACTCCTCAATTGCAGAGAGTATTTACTA
AATAGAAATAGTAAAATTTTATGAAGTGTACGAATGAATAAATGTTGTTA
TAAATTGGAAAAAAAAAAAAAAAA
RE23003.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7208-RB | 1599 | CG7208-RB | 42..1598 | 1..1557 | 7785 | 100 | Plus |
CG7208-RA | 1607 | CG7208-RA | 181..1607 | 131..1557 | 7135 | 100 | Plus |
CG7208.b | 1495 | CG7208.b | 70..1495 | 132..1557 | 7130 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 14007983..14008922 | 1557..618 | 4655 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 14008985..14009473 | 619..131 | 2430 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 14009588..14009718 | 131..1 | 655 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18183656..18184595 | 1557..618 | 4700 | 100 | Minus |
3R | 32079331 | 3R | 18184658..18185146 | 619..131 | 2445 | 100 | Minus |
3R | 32079331 | 3R | 18185261..18185391 | 131..1 | 655 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 17924487..17925426 | 1557..618 | 4700 | 100 | Minus |
3R | 31820162 | 3R | 17925489..17925977 | 619..131 | 2445 | 100 | Minus |
3R | 31820162 | 3R | 17926092..17926222 | 131..1 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 14:06:27 has no hits.
RE23003.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:07:24 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 14008985..14009472 | 132..619 | 99 | <- | Minus |
chr3R | 14007982..14008920 | 620..1558 | 99 | <- | Minus |
chr3R | 14009588..14009718 | 1..131 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:58 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1344 | 87..1430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:23 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1344 | 87..1430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:18:45 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1344 | 87..1430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:18 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1344 | 87..1430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:50:38 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1344 | 87..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:44 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1557 | 1..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:23 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1557 | 1..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:18:45 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 7..1563 | 1..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:18 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 1..1557 | 1..1557 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:50:38 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7208-RB | 7..1563 | 1..1557 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18183655..18184593 | 620..1558 | 99 | <- | Minus |
3R | 18184658..18185145 | 132..619 | 100 | <- | Minus |
3R | 18185261..18185391 | 1..131 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18183655..18184593 | 620..1558 | 99 | <- | Minus |
3R | 18184658..18185145 | 132..619 | 100 | <- | Minus |
3R | 18185261..18185391 | 1..131 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18183655..18184593 | 620..1558 | 99 | <- | Minus |
3R | 18184658..18185145 | 132..619 | 100 | <- | Minus |
3R | 18185261..18185391 | 1..131 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:18:45 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14010983..14011113 | 1..131 | 100 | | Minus |
arm_3R | 14009377..14010315 | 620..1558 | 99 | <- | Minus |
arm_3R | 14010380..14010867 | 132..619 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:45 Download gff for
RE23003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17924486..17925424 | 620..1558 | 99 | <- | Minus |
3R | 17925489..17925976 | 132..619 | 100 | <- | Minus |
3R | 17926092..17926222 | 1..131 | 100 | | Minus |
RE23003.pep Sequence
Translation from 86 to 1429
> RE23003.pep
MFVKVKLDAEGNTSVMPEMFELHNNATIGELKQKLEVKVGLPLARLNVQS
FHKSLENDEFITNLLRIPDKSDYTYPSTTLNGTAFSLYHENSFVGFLQFY
TIPEGKSQLDFLNMPKSSMLLPVDRLPQFCEASNSQDSSASSASNQTNAS
FESASTSASSVARKTRVCASDEESAAKRIRSNQENSVVKVVPQQNLLADK
RAGSMASIFGSKIHLMNCCKTETSRTSCSVEQAEECKERKKDCCTPKNCR
KRDTRPPYANTMPENRRYALVITNQSSCSDGVDTIALMEHFHSIFEDSGS
SVSDLNFSECASTQTFDCNMLVVCEDNETAQWVIEAVEGVEPPHSCQPFI
KFFDLVRTTFVLPLVSPNKSLCVIFALLESQNPGLNTDRWAVVNRSTLDC
QDVERQVAQFCDNVLIEVYIDEDSRDFIADRCSKLRYCFWQLKFDFI*
RE23003.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF16735-PA | 284 | GF16735-PA | 67..281 | 233..446 | 586 | 50.7 | Plus |
Dana\GF17939-PA | 425 | GF17939-PA | 212..424 | 235..446 | 568 | 48.8 | Plus |
Dana\GF23371-PA | 354 | GF23371-PA | 126..347 | 239..446 | 420 | 39.9 | Plus |
Dana\GF21635-PA | 342 | GF21635-PA | 94..335 | 222..446 | 406 | 39.5 | Plus |
Dana\GF21616-PA | 517 | GF21616-PA | 289..510 | 239..446 | 404 | 39.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG16696-PA | 446 | GG16696-PA | 1..444 | 1..446 | 1823 | 77.8 | Plus |
Dere\GG24522-PA | 373 | GG24522-PA | 161..364 | 241..446 | 402 | 39.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH17337-PA | 464 | GH17337-PA | 1..464 | 1..446 | 498 | 31.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7208-PB | 447 | CG7208-PB | 1..447 | 1..447 | 2333 | 100 | Plus |
CG7208-PA | 450 | CG7208-PA | 19..450 | 16..447 | 2260 | 100 | Plus |
CG31948-PA | 303 | CG31948-PA | 69..296 | 223..446 | 419 | 37.2 | Plus |
CG31948-PB | 372 | CG31948-PB | 138..365 | 223..446 | 419 | 37.2 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL12013-PA | 375 | GL12013-PA | 173..374 | 244..446 | 392 | 36.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA26160-PB | 383 | GA26160-PB | 181..382 | 244..446 | 392 | 36.8 | Plus |
Dpse\GA26160-PB | 383 | GA26160-PB | 1..202 | 1..194 | 158 | 28 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15324-PA | 447 | GM15324-PA | 1..447 | 1..447 | 2026 | 89.3 | Plus |
Dsec\GM18229-PA | 301 | GM18229-PA | 84..294 | 238..446 | 405 | 39.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20200-PA | 449 | GD20200-PA | 18..449 | 16..447 | 1926 | 86.8 | Plus |
Dsim\GD22836-PA | 301 | GD22836-PA | 84..294 | 238..446 | 405 | 39.7 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK19255-PA | 177 | GK19255-PA | 12..174 | 283..444 | 243 | 35.2 | Plus |
Dwil\GK18634-PA | 349 | GK18634-PA | 166..347 | 257..446 | 200 | 29.8 | Plus |
Dwil\GK22278-PA | 341 | GK22278-PA | 157..339 | 256..446 | 200 | 29.2 | Plus |
Dwil\GK16631-PA | 199 | GK16631-PA | 1..137 | 1..131 | 176 | 33.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:01:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE25233-PA | 446 | GE25233-PA | 1..444 | 1..446 | 1807 | 80.9 | Plus |
Dyak\GE15112-PA | 379 | GE15112-PA | 136..370 | 197..446 | 404 | 35.8 | Plus |
RE23003.hyp Sequence
Translation from 86 to 1429
> RE23003.hyp
MFVKVKLDAEGNTSVMPEMFELHNNATIGELKQKLEVKVGLPLARLNVQS
FHKSLENDEFITNLLRIPDKSDYTYPSTTLNGTAFSLYHENSFVGFLQFY
TIPEGKSQLDFLNMPKSSMLLPVDRLPQFCEASNSQDSSASSASNQTNAS
FESASTSASSVARKTRVCASDEESAAKRIRSNQENSVVKVVPQQNLLADK
RAGSMASIFGSKIHLMNCCKTETSRTSCSVEQAEECKERKKDCCTPKNCR
KRDTRPPYANTMPENRRYALVITNQSSCSDGVDTIALMEHFHSIFEDSGS
SVSDLNFSECASTQTFDCNMLVVCEDNETAQWVIEAVEGVEPPHSCQPFI
KFFDLVRTTFVLPLVSPNKSLCVIFALLESQNPGLNTDRWAVVNRSTLDC
QDVERQVAQFCDNVLIEVYIDEDSRDFIADRCSKLRYCFWQLKFDFI*
RE23003.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7208-PB | 447 | CG7208-PB | 1..447 | 1..447 | 2333 | 100 | Plus |
CG7208-PA | 450 | CG7208-PA | 19..450 | 16..447 | 2260 | 100 | Plus |
CG31948-PA | 303 | CG31948-PA | 69..296 | 223..446 | 419 | 37.2 | Plus |
CG31948-PB | 372 | CG31948-PB | 138..365 | 223..446 | 419 | 37.2 | Plus |