Clone RE23003 Report

Search the DGRC for RE23003

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:230
Well:3
Vector:pFlc-1
Associated Gene/TranscriptCG7208-RB
Protein status:RE23003.pep: gold
Sequenced Size:1574

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7208 2003-01-01 Sim4 clustering to Release 3
CG7208 2008-04-29 Release 5.5 accounting
CG7208 2008-08-15 Release 5.9 accounting
CG7208 2008-12-18 5.12 accounting

Clone Sequence Records

RE23003.complete Sequence

1574 bp (1574 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021300

> RE23003.complete
ATCTTGAATATTCTATTTTGAGAGACACACTTATTTTGTATATTACCAAT
TGTTAATTCAAGTTTTAATATCTTCTCTTACATAAAATGTTCGTCAAAGT
GAAATTAGATGCCGAGGGAAACACAAGTGTGATGCCGGAAATGTTCGAGC
TCCACAATAATGCGACCATTGGTGAATTGAAGCAAAAACTGGAGGTAAAA
GTAGGTCTTCCCTTGGCTCGCCTAAACGTACAGAGTTTTCACAAGTCTCT
GGAAAACGATGAGTTTATTACAAATTTGCTCAGAATTCCGGATAAAAGCG
ATTATACTTATCCGTCGACAACGCTTAATGGTACAGCCTTTTCGCTGTAC
CACGAAAATTCCTTTGTAGGATTTCTCCAATTCTATACAATTCCAGAGGG
CAAGAGCCAACTGGATTTCCTTAACATGCCGAAGAGCTCTATGCTTCTGC
CAGTGGACAGGCTTCCGCAGTTTTGCGAGGCTTCGAACTCGCAAGATTCC
TCCGCATCCAGTGCGTCGAACCAGACGAACGCCAGCTTCGAATCCGCAAG
CACGAGCGCCAGCTCCGTAGCGCGAAAGACGAGAGTGTGCGCCTCCGATG
AGGAATCGGCTGCCAAAAGAATACGAAGCAACCAAGAGAACAGCGTGGTC
AAGGTGGTTCCGCAGCAGAATCTGCTCGCGGACAAACGAGCCGGCAGCAT
GGCTTCCATATTTGGTTCGAAGATCCACCTGATGAACTGCTGCAAGACGG
AGACCAGCCGCACAAGCTGCTCAGTGGAGCAGGCCGAGGAGTGCAAGGAG
AGGAAGAAGGACTGCTGCACGCCAAAGAATTGTCGCAAGAGGGATACTCG
GCCGCCGTATGCGAACACAATGCCCGAGAACCGACGTTACGCCTTGGTGA
TAACTAACCAGAGTTCGTGCTCGGATGGTGTGGACACTATCGCCCTAATG
GAGCACTTTCATTCAATATTCGAGGACAGTGGATCGAGCGTCAGCGATCT
CAATTTTAGTGAGTGTGCCTCAACGCAGACATTCGACTGCAACATGCTGG
TGGTCTGCGAGGATAACGAAACGGCCCAATGGGTCATCGAAGCAGTCGAA
GGTGTGGAGCCGCCCCACTCCTGCCAGCCCTTCATTAAGTTCTTCGATCT
AGTGAGGACGACCTTTGTCCTGCCCTTGGTCAGTCCGAATAAGTCGCTCT
GTGTGATCTTCGCATTACTGGAGTCACAGAACCCGGGCTTGAATACCGAC
AGATGGGCCGTCGTTAATCGCTCCACTTTGGACTGCCAAGACGTGGAGAG
GCAGGTCGCTCAATTCTGCGACAACGTCCTTATTGAGGTGTATATCGATG
AGGATAGCAGGGATTTCATCGCCGACCGGTGTTCCAAATTGCGATACTGT
TTCTGGCAACTTAAATTCGATTTTATATAGGACTTTTTGGGCTTTCCAAA
TTCACTGTTAACTTGTTAAGATACTCCTCAATTGCAGAGAGTATTTACTA
AATAGAAATAGTAAAATTTTATGAAGTGTACGAATGAATAAATGTTGTTA
TAAATTGGAAAAAAAAAAAAAAAA

RE23003.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7208-RB 1599 CG7208-RB 42..1598 1..1557 7785 100 Plus
CG7208-RA 1607 CG7208-RA 181..1607 131..1557 7135 100 Plus
CG7208.b 1495 CG7208.b 70..1495 132..1557 7130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14007983..14008922 1557..618 4655 99.7 Minus
chr3R 27901430 chr3R 14008985..14009473 619..131 2430 99.8 Minus
chr3R 27901430 chr3R 14009588..14009718 131..1 655 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18183656..18184595 1557..618 4700 100 Minus
3R 32079331 3R 18184658..18185146 619..131 2445 100 Minus
3R 32079331 3R 18185261..18185391 131..1 655 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17924487..17925426 1557..618 4700 100 Minus
3R 31820162 3R 17925489..17925977 619..131 2445 100 Minus
3R 31820162 3R 17926092..17926222 131..1 655 100 Minus
Blast to na_te.dros performed on 2019-03-15 14:06:27 has no hits.

RE23003.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:07:24 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14008985..14009472 132..619 99 <- Minus
chr3R 14007982..14008920 620..1558 99 <- Minus
chr3R 14009588..14009718 1..131 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:02:58 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1344 87..1430 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:23 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1344 87..1430 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:18:45 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1344 87..1430 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:06:18 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1344 87..1430 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:50:38 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1344 87..1430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:23:44 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:23 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:18:45 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 7..1563 1..1557 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:06:18 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 1..1557 1..1557 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:50:38 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
CG7208-RB 7..1563 1..1557 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18183655..18184593 620..1558 99 <- Minus
3R 18184658..18185145 132..619 100 <- Minus
3R 18185261..18185391 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18183655..18184593 620..1558 99 <- Minus
3R 18184658..18185145 132..619 100 <- Minus
3R 18185261..18185391 1..131 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:07:24 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18183655..18184593 620..1558 99 <- Minus
3R 18184658..18185145 132..619 100 <- Minus
3R 18185261..18185391 1..131 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:18:45 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14010983..14011113 1..131 100   Minus
arm_3R 14009377..14010315 620..1558 99 <- Minus
arm_3R 14010380..14010867 132..619 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:45 Download gff for RE23003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17924486..17925424 620..1558 99 <- Minus
3R 17925489..17925976 132..619 100 <- Minus
3R 17926092..17926222 1..131 100   Minus

RE23003.pep Sequence

Translation from 86 to 1429

> RE23003.pep
MFVKVKLDAEGNTSVMPEMFELHNNATIGELKQKLEVKVGLPLARLNVQS
FHKSLENDEFITNLLRIPDKSDYTYPSTTLNGTAFSLYHENSFVGFLQFY
TIPEGKSQLDFLNMPKSSMLLPVDRLPQFCEASNSQDSSASSASNQTNAS
FESASTSASSVARKTRVCASDEESAAKRIRSNQENSVVKVVPQQNLLADK
RAGSMASIFGSKIHLMNCCKTETSRTSCSVEQAEECKERKKDCCTPKNCR
KRDTRPPYANTMPENRRYALVITNQSSCSDGVDTIALMEHFHSIFEDSGS
SVSDLNFSECASTQTFDCNMLVVCEDNETAQWVIEAVEGVEPPHSCQPFI
KFFDLVRTTFVLPLVSPNKSLCVIFALLESQNPGLNTDRWAVVNRSTLDC
QDVERQVAQFCDNVLIEVYIDEDSRDFIADRCSKLRYCFWQLKFDFI*

RE23003.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16735-PA 284 GF16735-PA 67..281 233..446 586 50.7 Plus
Dana\GF17939-PA 425 GF17939-PA 212..424 235..446 568 48.8 Plus
Dana\GF23371-PA 354 GF23371-PA 126..347 239..446 420 39.9 Plus
Dana\GF21635-PA 342 GF21635-PA 94..335 222..446 406 39.5 Plus
Dana\GF21616-PA 517 GF21616-PA 289..510 239..446 404 39.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16696-PA 446 GG16696-PA 1..444 1..446 1823 77.8 Plus
Dere\GG24522-PA 373 GG24522-PA 161..364 241..446 402 39.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17337-PA 464 GH17337-PA 1..464 1..446 498 31.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7208-PB 447 CG7208-PB 1..447 1..447 2333 100 Plus
CG7208-PA 450 CG7208-PA 19..450 16..447 2260 100 Plus
CG31948-PA 303 CG31948-PA 69..296 223..446 419 37.2 Plus
CG31948-PB 372 CG31948-PB 138..365 223..446 419 37.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12013-PA 375 GL12013-PA 173..374 244..446 392 36.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26160-PB 383 GA26160-PB 181..382 244..446 392 36.8 Plus
Dpse\GA26160-PB 383 GA26160-PB 1..202 1..194 158 28 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15324-PA 447 GM15324-PA 1..447 1..447 2026 89.3 Plus
Dsec\GM18229-PA 301 GM18229-PA 84..294 238..446 405 39.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20200-PA 449 GD20200-PA 18..449 16..447 1926 86.8 Plus
Dsim\GD22836-PA 301 GD22836-PA 84..294 238..446 405 39.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19255-PA 177 GK19255-PA 12..174 283..444 243 35.2 Plus
Dwil\GK18634-PA 349 GK18634-PA 166..347 257..446 200 29.8 Plus
Dwil\GK22278-PA 341 GK22278-PA 157..339 256..446 200 29.2 Plus
Dwil\GK16631-PA 199 GK16631-PA 1..137 1..131 176 33.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25233-PA 446 GE25233-PA 1..444 1..446 1807 80.9 Plus
Dyak\GE15112-PA 379 GE15112-PA 136..370 197..446 404 35.8 Plus

RE23003.hyp Sequence

Translation from 86 to 1429

> RE23003.hyp
MFVKVKLDAEGNTSVMPEMFELHNNATIGELKQKLEVKVGLPLARLNVQS
FHKSLENDEFITNLLRIPDKSDYTYPSTTLNGTAFSLYHENSFVGFLQFY
TIPEGKSQLDFLNMPKSSMLLPVDRLPQFCEASNSQDSSASSASNQTNAS
FESASTSASSVARKTRVCASDEESAAKRIRSNQENSVVKVVPQQNLLADK
RAGSMASIFGSKIHLMNCCKTETSRTSCSVEQAEECKERKKDCCTPKNCR
KRDTRPPYANTMPENRRYALVITNQSSCSDGVDTIALMEHFHSIFEDSGS
SVSDLNFSECASTQTFDCNMLVVCEDNETAQWVIEAVEGVEPPHSCQPFI
KFFDLVRTTFVLPLVSPNKSLCVIFALLESQNPGLNTDRWAVVNRSTLDC
QDVERQVAQFCDNVLIEVYIDEDSRDFIADRCSKLRYCFWQLKFDFI*

RE23003.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7208-PB 447 CG7208-PB 1..447 1..447 2333 100 Plus
CG7208-PA 450 CG7208-PA 19..450 16..447 2260 100 Plus
CG31948-PA 303 CG31948-PA 69..296 223..446 419 37.2 Plus
CG31948-PB 372 CG31948-PB 138..365 223..446 419 37.2 Plus