Clone RE23052 Report

Search the DGRC for RE23052

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:230
Well:52
Vector:pFlc-1
Associated Gene/TranscriptNeu3-RB
Protein status:RE23052.pep: validated full length
Preliminary Size:3660
Sequenced Size:2845

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31385 2003-01-01 Sim4 clustering to Release 3
CG31385 2004-01-14 Blastp of sequenced clone
Neu3 2008-04-29 Release 5.5 accounting

Clone Sequence Records

RE23052.complete Sequence

2845 bp (2845 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011467

> RE23052.complete
TATCTCTAGCACTGGTGTTTGGTTAATGCACGTTTTTGATTTGGTATGTT
ACACAATTGAACTTTAAATGCTTTGATCGCTGTACTTTATTTTCCCATAT
TAATCCCTATATTTGATTGTCCTTACAGCTTAAAATCCTCTGGTGGAAGC
AAACCCATCACAACGCGAACCAATCGAAATGGCACAGGTCCACCGCCAAG
TAATGGTTTGTTAAAATCAACGCCTAGCAGTACGGATGATATGGATTCGG
CACTATTAAAATCACCAAGCGACTCCACACCGTCAGCTGGACTTTTTGGA
AAATTCGATGGCTTCACTCTGCGACCGCTGAACGATGCATCTTCACCAGC
GAGCAACTACAACGGACCAAATGTGGCCTTTGTGCAACCCACTGTGCAGC
AGGATGGACCGCAGCGAATGGCCCCACCACCCCCAGTAGTAAAACCAGGA
ACGGCTCCCATTCATCCCCCATCCCCGAAACCAGAAGCTACTTGGGTGAG
GCCAGCGCCCGCTTTGCCACCACCCAATCCTGGCTCAACGGCACGTCCCA
TTATCTCACCACCCAAACTGGATTCTAGTACATTAACTATGGTACCACTC
AAGGACAGCACAGAGGATCTCTCGCCCAGTCGATCTGCTCCTCCAGTTCC
TCTACACGCTGATCCCAAGCTAAATGTTAAACGAGATGGTACCATTCGTC
GATTTGCTTCGTTTCTGAAAAAGGAAGAGAAACCGCCACTAAAAGAGAAG
ACCTACATCGATCGGGAGCGGCTGCGAACTCTGGAAATTTCTGCCCCTAT
GCCTGTGCCCGCTGCTCCCCAAGCTGAATCATCCAATTCCGATTCGGAGA
CCACTCCACGCGAAGAGGAAACCCAGAATCTGGTAAAACGCGCACAATCC
ATGCGTTCGCCCACCAAAAAGGCTCCACTCCAGAGTTTTGGATCCATGCG
TTCTCCACCGGGACTGCCACGGCCGAAGAGTGGTCAGGTGAATAGCAATG
GCGCCTCGAGACCAAAGTCGCCACCTCCAAGGCCACCGCCAGTGGTGGTC
AAGAAAACAAACTCCATCAGTTCATCGGGCTATCAGCGGCCGGTTTCCAC
TGCCCAGAGATCTGTGGAGAATACCTATGACGATTGCGAATTTGTGGAGA
ATGAAGTGCGAGCCTCGAACGACGACATTTACTCCGTAATTGATGAGATT
CCGCCAGCGGCACAGACCCTCAAGCGGAGCGATTTGGTGGCCAACAGGGC
GAGTAATGGCAGCGATATGGGTTTGCTAAATGAAATAGTGAATGAACTAG
AAAAGATCAACGGGGATTCCATATACTCAGGAAAGCCCGTTGCTGCAGCA
GCATCAGCAGCTCAACCAACACCCGCAGATCCCCCAAAAAGTCCCCAGCG
ACCTGCTCCACCCAAGCCAGCGAGCAGTGTGCTGGAGGAAAAGGCAGCTA
ATGCATCTGCAAGCACATATCACCGCCCGCCGCCAGCCAATGCTCCCGTG
GCTCGGGTTAAGCCCACTGTGGCGGACAAATCACAGGCGCAGGCGCAGGC
GCAGCCCAGCATGTCCAGCTTCAAGCCGGCGGCGGGGGGAAACGTCGGTC
AGTCGCAGCCAGCGCCAGTAGTCCAGCTGGCCAAACGGAGCAGCAGCGGC
AGCATGAGCGGCGTAACCAATTACGCCCGTCCCAAATCCTTTATGAAGAG
CACAACGAAAACACTGCCCAATGGAACGGCTGGAGCGTCCACCACAGCGC
CATCGGCCACCATTCAAAAGCCCAAACCACTGTCAGCAAAGCCATCCTTC
AGCGGCGGTGGAGCGGGAGGAGTACTGGGAAAGCGGGCGAATGGCGGAGC
AGCGCCCACGCCACCCACTGTAAAGGCGGCAACATTGGCGGCGGCGCCAA
AGTCCAACATTGCATCGCTGACACAGCGATTCGAGCAGAGCAAGTAGACT
AAGGAACACTAGGATATCGGGCTTGACCATGAGCATAGCATGAAATATGT
ATTGGAAAATGAAAGGATGAGAGGGTGTATGCTGAAAATCTCATCCTTAC
CAAGTTTTAAATGTGTAATTATAGTTCATTGATTGTTTAGACATGTTATA
GCAAAGCAAAGTTCTTAAATATTATAGTACCACATAGTGATCAGCATTTT
ATTCATGGCATCAGTACAATGAATTTCTTAAATTTTTCCAAAACAAGCCT
GTGTGTGAAAGTAAGAAAATATGTTAGCCTGTATTCTTCGCCGTTTTGTG
ATTCTATGGCTATGCTCTTGGTCTGTCTAAATAGCCACCCTGCGTGGAAT
TGACTTAAGTTTTAGTTAAGTTACGATTTAATTTCATCTGGCACTGACTA
TGACTACGACTGCGTCGTCTTTGATATTCATTCCTTTACCAATGCCCCAC
TAGTTAGACGTAAGGCGTTGCTTAACTCATGTGCTAAGTATGTATGTATC
TCAATGGTTAATGTTTAAGCGCTGCATGTGAAGTTTTATTTTAGCACCTA
ACGATAGCTACGTATCTGTATCTATACTATAATCTACGGTAATCCCCTGT
ATTTATGTACATGTATGTTTATATGCAATATGCTTTTGTAAATAAAAACC
AAAGAAGTTAAATTGTCACAACAAATGCGCCGGCTCGAATTAATTAAAAT
AAAAAGTGTTGTATAGCTGGGGATATTGAAAACGTAATTAAAAGAGCCAT
TCAGTAGCGAAATCAGTTTAAATTGTCTCAATGTTGCAAGGAATATGTTA
CATCCCATATGTAAGAACAATATCAAATGTGTATAGAACCGAAGTTATGT
TAAAATATATGTTTAACTCAATTGAAACGAAAAAAAAAAAAAAAA

RE23052.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
Neu3.b 5890 Neu3.b 3142..5848 129..2835 13475 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10489709..10492535 2827..1 14105 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14664949..14667783 2835..1 14115 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14405780..14408614 2835..1 14115 99.8 Minus
Blast to na_te.dros performed 2019-03-16 12:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
BS3 1790 BS3 BS3 1790bp 1529..1570 892..934 122 79.1 Plus

RE23052.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:49:57 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10489707..10492535 1..2829 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:02 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RB 2406..4224 129..1947 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:42:11 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RC 2406..4224 129..1947 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:17 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Meltrin-RC 2406..4224 129..1947 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:31:02 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RB 2406..4224 129..1947 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:08 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Meltrin-RC 2406..4224 129..1947 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:51:50 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RB 3136..4954 129..1947 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:42:11 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RC 3136..4954 129..1947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:17 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Meltrin-RC 3136..4954 129..1947 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:31:02 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Neu3-RB 3136..4954 129..1947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:08 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
Meltrin-RC 3093..5793 129..2829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:57 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14664955..14667783 1..2829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:57 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14664955..14667783 1..2829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:49:57 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14664955..14667783 1..2829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:17 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10490677..10493505 1..2829 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:33 Download gff for RE23052.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14405786..14408614 1..2829 99   Minus

RE23052.pep Sequence

Translation from 240 to 1946

> RE23052.pep
MDSALLKSPSDSTPSAGLFGKFDGFTLRPLNDASSPASNYNGPNVAFVQP
TVQQDGPQRMAPPPPVVKPGTAPIHPPSPKPEATWVRPAPALPPPNPGST
ARPIISPPKLDSSTLTMVPLKDSTEDLSPSRSAPPVPLHADPKLNVKRDG
TIRRFASFLKKEEKPPLKEKTYIDRERLRTLEISAPMPVPAAPQAESSNS
DSETTPREEETQNLVKRAQSMRSPTKKAPLQSFGSMRSPPGLPRPKSGQV
NSNGASRPKSPPPRPPPVVVKKTNSISSSGYQRPVSTAQRSVENTYDDCE
FVENEVRASNDDIYSVIDEIPPAAQTLKRSDLVANRASNGSDMGLLNEIV
NELEKINGDSIYSGKPVAAAASAAQPTPADPPKSPQRPAPPKPASSVLEE
KAANASASTYHRPPPANAPVARVKPTVADKSQAQAQAQPSMSSFKPAAGG
NVGQSQPAPVVQLAKRSSSGSMSGVTNYARPKSFMKSTTKTLPNGTAGAS
TTAPSATIQKPKPLSAKPSFSGGGAGGVLGKRANGGAAPTPPTVKAATLA
AAPKSNIASLTQRFEQSK*

RE23052.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17538-PA 1558 GF17538-PA 1001..1558 1..568 1889 78.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21132-PA 1561 GG21132-PA 1008..1561 1..568 2705 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18929-PA 1467 GH18929-PA 880..1467 1..568 1462 61.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
Meltrin-PC 1407 CG7649-PC 840..1407 1..568 2918 100 Plus
CG11835-PD 795 CG11835-PD 258..770 34..555 186 24 Plus
CG11835-PC 795 CG11835-PC 258..770 34..555 186 24 Plus
CG11835-PB 795 CG11835-PB 258..770 34..555 186 24 Plus
CG11835-PA 795 CG11835-PA 258..770 34..555 186 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22077-PA 1627 GI22077-PA 1049..1624 1..565 1377 60.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23123-PA 1172 GL23123-PA 707..1037 1..325 1139 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27151-PA 1588 GA27151-PA 1026..1588 1..568 1718 71.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25835-PA 1050 GM25835-PA 484..1050 1..568 2784 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22896-PA 1397 GJ22896-PA 818..1397 1..568 1430 62.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14446-PA 1388 GK14446-PA 815..1388 1..568 1498 63.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26433-PA 1565 GE26433-PA 1010..1565 1..568 2384 93.5 Plus

RE23052.hyp Sequence

Translation from 240 to 1946

> RE23052.hyp
MDSALLKSPSDSTPSAGLFGKFDGFTLRPLNDASSPASNYNGPNVAFVQP
TVQQDGPQRMAPPPPVVKPGTAPIHPPSPKPEATWVRPAPALPPPNPGST
ARPIISPPKLDSSTLTMVPLKDSTEDLSPSRSAPPVPLHADPKLNVKRDG
TIRRFASFLKKEEKPPLKEKTYIDRERLRTLEISAPMPVPAAPQAESSNS
DSETTPREEETQNLVKRAQSMRSPTKKAPLQSFGSMRSPPGLPRPKSGQV
NSNGASRPKSPPPRPPPVVVKKTNSISSSGYQRPVSTAQRSVENTYDDCE
FVENEVRASNDDIYSVIDEIPPAAQTLKRSDLVANRASNGSDMGLLNEIV
NELEKINGDSIYSGKPVAAAASAAQPTPADPPKSPQRPAPPKPASSVLEE
KAANASASTYHRPPPANAPVARVKPTVADKSQAQAQAQPSMSSFKPAAGG
NVGQSQPAPVVQLAKRSSSGSMSGVTNYARPKSFMKSTTKTLPNGTAGAS
TTAPSATIQKPKPLSAKPSFSGGGAGGVLGKRANGGAAPTPPTVKAATLA
AAPKSNIASLTQRFEQSK*

RE23052.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Meltrin-PC 1407 CG7649-PC 840..1407 1..568 2918 100 Plus
CG11835-PD 795 CG11835-PD 258..770 34..555 186 24 Plus
CG11835-PC 795 CG11835-PC 258..770 34..555 186 24 Plus
CG11835-PB 795 CG11835-PB 258..770 34..555 186 24 Plus
CG11835-PA 795 CG11835-PA 258..770 34..555 186 24 Plus