BDGP Sequence Production Resources |
Search the DGRC for RE23052
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 230 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Neu3-RB |
Protein status: | RE23052.pep: validated full length |
Preliminary Size: | 3660 |
Sequenced Size: | 2845 |
Gene | Date | Evidence |
---|---|---|
CG31385 | 2003-01-01 | Sim4 clustering to Release 3 |
CG31385 | 2004-01-14 | Blastp of sequenced clone |
Neu3 | 2008-04-29 | Release 5.5 accounting |
2845 bp (2845 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011467
> RE23052.complete TATCTCTAGCACTGGTGTTTGGTTAATGCACGTTTTTGATTTGGTATGTT ACACAATTGAACTTTAAATGCTTTGATCGCTGTACTTTATTTTCCCATAT TAATCCCTATATTTGATTGTCCTTACAGCTTAAAATCCTCTGGTGGAAGC AAACCCATCACAACGCGAACCAATCGAAATGGCACAGGTCCACCGCCAAG TAATGGTTTGTTAAAATCAACGCCTAGCAGTACGGATGATATGGATTCGG CACTATTAAAATCACCAAGCGACTCCACACCGTCAGCTGGACTTTTTGGA AAATTCGATGGCTTCACTCTGCGACCGCTGAACGATGCATCTTCACCAGC GAGCAACTACAACGGACCAAATGTGGCCTTTGTGCAACCCACTGTGCAGC AGGATGGACCGCAGCGAATGGCCCCACCACCCCCAGTAGTAAAACCAGGA ACGGCTCCCATTCATCCCCCATCCCCGAAACCAGAAGCTACTTGGGTGAG GCCAGCGCCCGCTTTGCCACCACCCAATCCTGGCTCAACGGCACGTCCCA TTATCTCACCACCCAAACTGGATTCTAGTACATTAACTATGGTACCACTC AAGGACAGCACAGAGGATCTCTCGCCCAGTCGATCTGCTCCTCCAGTTCC TCTACACGCTGATCCCAAGCTAAATGTTAAACGAGATGGTACCATTCGTC GATTTGCTTCGTTTCTGAAAAAGGAAGAGAAACCGCCACTAAAAGAGAAG ACCTACATCGATCGGGAGCGGCTGCGAACTCTGGAAATTTCTGCCCCTAT GCCTGTGCCCGCTGCTCCCCAAGCTGAATCATCCAATTCCGATTCGGAGA CCACTCCACGCGAAGAGGAAACCCAGAATCTGGTAAAACGCGCACAATCC ATGCGTTCGCCCACCAAAAAGGCTCCACTCCAGAGTTTTGGATCCATGCG TTCTCCACCGGGACTGCCACGGCCGAAGAGTGGTCAGGTGAATAGCAATG GCGCCTCGAGACCAAAGTCGCCACCTCCAAGGCCACCGCCAGTGGTGGTC AAGAAAACAAACTCCATCAGTTCATCGGGCTATCAGCGGCCGGTTTCCAC TGCCCAGAGATCTGTGGAGAATACCTATGACGATTGCGAATTTGTGGAGA ATGAAGTGCGAGCCTCGAACGACGACATTTACTCCGTAATTGATGAGATT CCGCCAGCGGCACAGACCCTCAAGCGGAGCGATTTGGTGGCCAACAGGGC GAGTAATGGCAGCGATATGGGTTTGCTAAATGAAATAGTGAATGAACTAG AAAAGATCAACGGGGATTCCATATACTCAGGAAAGCCCGTTGCTGCAGCA GCATCAGCAGCTCAACCAACACCCGCAGATCCCCCAAAAAGTCCCCAGCG ACCTGCTCCACCCAAGCCAGCGAGCAGTGTGCTGGAGGAAAAGGCAGCTA ATGCATCTGCAAGCACATATCACCGCCCGCCGCCAGCCAATGCTCCCGTG GCTCGGGTTAAGCCCACTGTGGCGGACAAATCACAGGCGCAGGCGCAGGC GCAGCCCAGCATGTCCAGCTTCAAGCCGGCGGCGGGGGGAAACGTCGGTC AGTCGCAGCCAGCGCCAGTAGTCCAGCTGGCCAAACGGAGCAGCAGCGGC AGCATGAGCGGCGTAACCAATTACGCCCGTCCCAAATCCTTTATGAAGAG CACAACGAAAACACTGCCCAATGGAACGGCTGGAGCGTCCACCACAGCGC CATCGGCCACCATTCAAAAGCCCAAACCACTGTCAGCAAAGCCATCCTTC AGCGGCGGTGGAGCGGGAGGAGTACTGGGAAAGCGGGCGAATGGCGGAGC AGCGCCCACGCCACCCACTGTAAAGGCGGCAACATTGGCGGCGGCGCCAA AGTCCAACATTGCATCGCTGACACAGCGATTCGAGCAGAGCAAGTAGACT AAGGAACACTAGGATATCGGGCTTGACCATGAGCATAGCATGAAATATGT ATTGGAAAATGAAAGGATGAGAGGGTGTATGCTGAAAATCTCATCCTTAC CAAGTTTTAAATGTGTAATTATAGTTCATTGATTGTTTAGACATGTTATA GCAAAGCAAAGTTCTTAAATATTATAGTACCACATAGTGATCAGCATTTT ATTCATGGCATCAGTACAATGAATTTCTTAAATTTTTCCAAAACAAGCCT GTGTGTGAAAGTAAGAAAATATGTTAGCCTGTATTCTTCGCCGTTTTGTG ATTCTATGGCTATGCTCTTGGTCTGTCTAAATAGCCACCCTGCGTGGAAT TGACTTAAGTTTTAGTTAAGTTACGATTTAATTTCATCTGGCACTGACTA TGACTACGACTGCGTCGTCTTTGATATTCATTCCTTTACCAATGCCCCAC TAGTTAGACGTAAGGCGTTGCTTAACTCATGTGCTAAGTATGTATGTATC TCAATGGTTAATGTTTAAGCGCTGCATGTGAAGTTTTATTTTAGCACCTA ACGATAGCTACGTATCTGTATCTATACTATAATCTACGGTAATCCCCTGT ATTTATGTACATGTATGTTTATATGCAATATGCTTTTGTAAATAAAAACC AAAGAAGTTAAATTGTCACAACAAATGCGCCGGCTCGAATTAATTAAAAT AAAAAGTGTTGTATAGCTGGGGATATTGAAAACGTAATTAAAAGAGCCAT TCAGTAGCGAAATCAGTTTAAATTGTCTCAATGTTGCAAGGAATATGTTA CATCCCATATGTAAGAACAATATCAAATGTGTATAGAACCGAAGTTATGT TAAAATATATGTTTAACTCAATTGAAACGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Neu3.b | 5890 | Neu3.b | 3142..5848 | 129..2835 | 13475 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10489709..10492535 | 2827..1 | 14105 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14664949..14667783 | 2835..1 | 14115 | 99.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14405780..14408614 | 2835..1 | 14115 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
BS3 | 1790 | BS3 BS3 1790bp | 1529..1570 | 892..934 | 122 | 79.1 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10489707..10492535 | 1..2829 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RB | 2406..4224 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RC | 2406..4224 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Meltrin-RC | 2406..4224 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RB | 2406..4224 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Meltrin-RC | 2406..4224 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RB | 3136..4954 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RC | 3136..4954 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Meltrin-RC | 3136..4954 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Neu3-RB | 3136..4954 | 129..1947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Meltrin-RC | 3093..5793 | 129..2829 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14664955..14667783 | 1..2829 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14664955..14667783 | 1..2829 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14664955..14667783 | 1..2829 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10490677..10493505 | 1..2829 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14405786..14408614 | 1..2829 | 99 | Minus |
Translation from 240 to 1946
> RE23052.pep MDSALLKSPSDSTPSAGLFGKFDGFTLRPLNDASSPASNYNGPNVAFVQP TVQQDGPQRMAPPPPVVKPGTAPIHPPSPKPEATWVRPAPALPPPNPGST ARPIISPPKLDSSTLTMVPLKDSTEDLSPSRSAPPVPLHADPKLNVKRDG TIRRFASFLKKEEKPPLKEKTYIDRERLRTLEISAPMPVPAAPQAESSNS DSETTPREEETQNLVKRAQSMRSPTKKAPLQSFGSMRSPPGLPRPKSGQV NSNGASRPKSPPPRPPPVVVKKTNSISSSGYQRPVSTAQRSVENTYDDCE FVENEVRASNDDIYSVIDEIPPAAQTLKRSDLVANRASNGSDMGLLNEIV NELEKINGDSIYSGKPVAAAASAAQPTPADPPKSPQRPAPPKPASSVLEE KAANASASTYHRPPPANAPVARVKPTVADKSQAQAQAQPSMSSFKPAAGG NVGQSQPAPVVQLAKRSSSGSMSGVTNYARPKSFMKSTTKTLPNGTAGAS TTAPSATIQKPKPLSAKPSFSGGGAGGVLGKRANGGAAPTPPTVKAATLA AAPKSNIASLTQRFEQSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17538-PA | 1558 | GF17538-PA | 1001..1558 | 1..568 | 1889 | 78.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21132-PA | 1561 | GG21132-PA | 1008..1561 | 1..568 | 2705 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18929-PA | 1467 | GH18929-PA | 880..1467 | 1..568 | 1462 | 61.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Meltrin-PC | 1407 | CG7649-PC | 840..1407 | 1..568 | 2918 | 100 | Plus |
CG11835-PD | 795 | CG11835-PD | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PC | 795 | CG11835-PC | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PB | 795 | CG11835-PB | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PA | 795 | CG11835-PA | 258..770 | 34..555 | 186 | 24 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22077-PA | 1627 | GI22077-PA | 1049..1624 | 1..565 | 1377 | 60.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23123-PA | 1172 | GL23123-PA | 707..1037 | 1..325 | 1139 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27151-PA | 1588 | GA27151-PA | 1026..1588 | 1..568 | 1718 | 71.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25835-PA | 1050 | GM25835-PA | 484..1050 | 1..568 | 2784 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22896-PA | 1397 | GJ22896-PA | 818..1397 | 1..568 | 1430 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14446-PA | 1388 | GK14446-PA | 815..1388 | 1..568 | 1498 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26433-PA | 1565 | GE26433-PA | 1010..1565 | 1..568 | 2384 | 93.5 | Plus |
Translation from 240 to 1946
> RE23052.hyp MDSALLKSPSDSTPSAGLFGKFDGFTLRPLNDASSPASNYNGPNVAFVQP TVQQDGPQRMAPPPPVVKPGTAPIHPPSPKPEATWVRPAPALPPPNPGST ARPIISPPKLDSSTLTMVPLKDSTEDLSPSRSAPPVPLHADPKLNVKRDG TIRRFASFLKKEEKPPLKEKTYIDRERLRTLEISAPMPVPAAPQAESSNS DSETTPREEETQNLVKRAQSMRSPTKKAPLQSFGSMRSPPGLPRPKSGQV NSNGASRPKSPPPRPPPVVVKKTNSISSSGYQRPVSTAQRSVENTYDDCE FVENEVRASNDDIYSVIDEIPPAAQTLKRSDLVANRASNGSDMGLLNEIV NELEKINGDSIYSGKPVAAAASAAQPTPADPPKSPQRPAPPKPASSVLEE KAANASASTYHRPPPANAPVARVKPTVADKSQAQAQAQPSMSSFKPAAGG NVGQSQPAPVVQLAKRSSSGSMSGVTNYARPKSFMKSTTKTLPNGTAGAS TTAPSATIQKPKPLSAKPSFSGGGAGGVLGKRANGGAAPTPPTVKAATLA AAPKSNIASLTQRFEQSK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Meltrin-PC | 1407 | CG7649-PC | 840..1407 | 1..568 | 2918 | 100 | Plus |
CG11835-PD | 795 | CG11835-PD | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PC | 795 | CG11835-PC | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PB | 795 | CG11835-PB | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PA | 795 | CG11835-PA | 258..770 | 34..555 | 186 | 24 | Plus |