Clone RE23139 Report

Search the DGRC for RE23139

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:231
Well:39
Vector:pFlc-1
Associated Gene/TranscriptCG7215-RA
Protein status:RE23139.pep: gold
Preliminary Size:611
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32920 2002-10-01 Blastp of sequenced clone
CG7217 2008-04-29 Release 5.5 accounting
CG7215 2008-08-15 Release 5.9 accounting
CG7217 2008-08-15 Release 5.9 accounting
CG7217 2008-12-18 5.12 accounting
CG7215 2008-12-18 5.12 accounting

Clone Sequence Records

RE23139.complete Sequence

1438 bp (1438 high quality bases) assembled on 2002-10-01

GenBank Submission: BT001575.1

> RE23139.complete
AGTTGTTTATATCGCTCGACTTCTCGAGTTTGACTTTTAATTTTTTAATA
AATTTTACGGCAATTGCTATGCAGATAACAATCAAGGTGCTGAAGGGCAA
GGACTGCACCATCGAGGTGGCGCCGACATCGACGATTCTGGAGGTGAAAC
ACCAGATCGAGGCGGAACTGCAGATATCGGCTACAAATCAAAAGCTACTG
CTGTTGGGGCGACCGCTTAACAATGAACAGACAATTGCGTCATATCCCAA
CATCAAGGAGGGCACCAAACTCAATCTGGTGGTGATAAAGCCCTGTTTAA
GGGACAGCATCCTGCGGGGATTCCGCAAGCACTATTCGGAGCCCCTAGCT
GAGCGTATGACCAATGAGTTTATGGCCGACTTCGAGCGGAAAATCAACGA
GCAGAGCCTGGACGACCTGGAGAGACTGGCGGACAGCATAGTCAACAGAG
CGGCCACATAGCGCCATTGAAGACCCAATACCAACCACCACCACCCCCTC
CAAAAATATGATGGAAGTCTATCCTTACAGCATAATATTTTTATTTCCCC
CCTTTAAAAAAACAAACTAACTAAAAAATATGAGGTAGTAAAAATTAAGA
CTTGACTGAAAACACACGGCCCATATTCTTTTTTGCGACGGTCTGGCAAC
GCTCCACCGGCCAGTTGCAGTCTTTGGCTGTGTGCGTGCGTGCCTGTGTG
TGTGAGAAGAAGAAAGAGAGGAGAAATGCGTGTGCTGTCGTGCAAATTTC
TTGGCCGAGTTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGA
TCCCTGTCCAAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCC
ATCGGTGGATCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCG
ATCTCGTCAATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTC
ACTCCAGGCTGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGA
TGAGCTGAAGTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCA
ACGATCCCTTTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGC
AAGGTGCGCCTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGA
TGTGACCATCGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACT
CGCTGGTGGTGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGAT
GGCACCGGACTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGTAAAT
GGAATCCAGTCAGCCCGAAAACACTAGAAACTCATACATGCTAATGCTAG
GCCGCAATGATATCAATTACGTCTTCAAAAGAACTATGTAAAACGTACAA
TATATATGCGATTAGAGATGTTAAAAAAAAAAAAAAAA

RE23139.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-RA 1421 Prx5-RA 2..1421 3..1422 7100 100 Plus
CG7215-RA 1421 CG7215-RA 2..1421 3..1422 7100 100 Plus
Prx5-RB 756 Prx5-RB 1..756 667..1422 3780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13990718..13991439 836..115 3610 100 Minus
chr3R 27901430 chr3R 13989808..13990263 1422..967 2280 100 Minus
chr3R 27901430 chr3R 13990392..13990526 968..834 675 100 Minus
chr3R 27901430 chr3R 13991495..13991610 118..3 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:42:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18166352..18167073 836..115 3610 100 Minus
3R 32079331 3R 18165441..18165897 1423..967 2285 100 Minus
3R 32079331 3R 18166026..18166160 968..834 675 100 Minus
3R 32079331 3R 18167129..18167244 118..3 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17907183..17907904 836..115 3610 100 Minus
3R 31820162 3R 17906272..17906728 1423..967 2285 100 Minus
3R 31820162 3R 17906857..17906991 968..834 675 100 Minus
3R 31820162 3R 17907960..17908075 118..3 580 100 Minus
Blast to na_te.dros performed 2019-03-16 01:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 4462..4514 691..640 118 71.7 Minus

RE23139.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:32:46 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13989808..13990261 969..1422 100 <- Minus
chr3R 13990392..13990526 834..968 100 <- Minus
chr3R 13990721..13991437 117..833 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:05 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
CG7217-RB 1..573 726..1298 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:50:27 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RB 1..573 726..1298 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:17 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 1..573 726..1298 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:32:38 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
CG7217-RB 1..573 726..1298 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:35:19 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 1..573 726..1298 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:01:19 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 2..1421 3..1422 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:50:27 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 2..1421 3..1422 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:17 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 27..1449 1..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:32:38 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 2..1421 3..1422 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:35:19 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 27..1449 1..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:46 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18167131..18167245 1..116 99   Minus
3R 18165442..18165895 969..1422 100 <- Minus
3R 18166026..18166160 834..968 100 <- Minus
3R 18166355..18167071 117..833 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:46 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18167131..18167245 1..116 99   Minus
3R 18165442..18165895 969..1422 100 <- Minus
3R 18166026..18166160 834..968 100 <- Minus
3R 18166355..18167071 117..833 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:32:46 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18167131..18167245 1..116 99   Minus
3R 18165442..18165895 969..1422 100 <- Minus
3R 18166026..18166160 834..968 100 <- Minus
3R 18166355..18167071 117..833 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:17 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991164..13991617 969..1422 100 <- Minus
arm_3R 13991748..13991882 834..968 100 <- Minus
arm_3R 13992077..13992793 117..833 100 <- Minus
arm_3R 13992853..13992967 1..116 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:12:52 Download gff for RE23139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17906273..17906726 969..1422 100 <- Minus
3R 17906857..17906991 834..968 100 <- Minus
3R 17907186..17907902 117..833 100 <- Minus
3R 17907962..17908076 1..116 99   Minus

RE23139.pep Sequence

Translation from 68 to 460

> RE23139.pep
MQITIKVLKGKDCTIEVAPTSTILEVKHQIEAELQISATNQKLLLLGRPL
NNEQTIASYPNIKEGTKLNLVVIKPCLRDSILRGFRKHYSEPLAERMTNE
FMADFERKINEQSLDDLERLADSIVNRAAT*

RE23139.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18244-PA 130 GF18244-PA 1..130 1..130 575 82.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16718-PA 130 GG16718-PA 1..130 1..130 622 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17339-PA 125 GH17339-PA 1..125 1..125 497 75.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-PB 130 CG7215-PB 1..130 1..130 649 100 Plus
CG7215-PA 130 CG7215-PA 1..130 1..130 649 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23879-PA 125 GI23879-PA 1..125 1..125 484 74.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12015-PA 130 GL12015-PA 1..130 1..130 495 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17200-PA 130 GA17200-PA 1..130 1..130 497 71.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15326-PA 130 GM15326-PA 1..130 1..130 649 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20202-PA 130 GD20202-PA 1..130 1..130 649 95.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23969-PA 125 GJ23969-PA 1..125 1..125 511 77.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11832-PA 127 GK11832-PA 1..126 1..126 473 70.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14745-PA 130 GE14745-PA 1..130 1..130 630 92.3 Plus
Dyak\GE25235-PA 130 GE25235-PA 1..130 1..130 626 91.5 Plus

RE23139.hyp Sequence

Translation from 725 to 1297

> RE23139.hyp
MRVLSCKFLGRVVNSALPQQIISLRSLSKTSAAMVKVGDSLPSVDLFEDS
PANKINTGDLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGV
DEIVCVSVNDPFVMSAWGKEHGAAGKVRLLADPAGGFTKALDVTIDLPPL
GGVRSKRYSLVVENGKVTELNVEPDGTGLSCSLANNIGKK*

RE23139.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-PB 190 CG7217-PB 1..190 1..190 969 100 Plus
Prx5-PA 190 CG7217-PA 1..190 1..190 969 100 Plus