BDGP Sequence Production Resources |
Search the DGRC for RE23260
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 232 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Srp9-RA |
Protein status: | RE23260.pep: gold |
Preliminary Size: | 660 |
Sequenced Size: | 835 |
Gene | Date | Evidence |
---|---|---|
CG8268 | 2001-12-14 | Blastp of sequenced clone |
CG8268 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8268 | 2003-01-01 | Sim4 clustering to Release 3 |
Srp9 | 2008-04-29 | Release 5.5 accounting |
Srp9 | 2008-08-15 | Release 5.9 accounting |
Srp9 | 2008-12-18 | 5.12 accounting |
835 bp (835 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071180
> RE23260.complete GTTGGTTTGGTATTTTTTCGATAGCTTCAACGTCACGCCGTCCAGTTGCT GTTGTTGTTTTTAATAATTTCGCCTGGATTTCCATTTGTTTAAATAAAAA ATGGTTTTTGTAAAGAACTGGGATGATTTCGAGATTGCCGTCGAGAACAT GTACTTGGCCAATCCACAGAACTGTCGACTTACCATGAAATACGCGCACT CCAAGGGCCACATTCTGCTAAAAATGACGGACAACGTTAAGTGTGTGCAG TACAAAGCGGAGAACATGCCGGATCTCAGAAAAATCGAGAAGATCACCAG CAACTTGGTGGGACACATGGCGTCCAAGGAATAGAACGCAGAAAAACAGA AACTTTTTGGCCACGGCGACACTTCTGCCCAGGAACAACAACAAAGATCA TAGCACATGCATGAGCATATGAATCGGCCACGAATGTTGTTGTTGCTTCG CCGGAGCAGGTGTGTGCTTGTGTGTGTGCCATCAACACCCGCATTGAATT TAGTTTTTAAGCACCAAAAAAGCCGCCGAGTTTTTGACATTCGAATGTGG CGATCAGAGTAGCTGCTGCATTTAGCCTGCTTTTAAACGACATTTTATAA ATGTCTGCTCTGTACACGTTGCGAATGAACTGCGGATGGAATCATCATCA TCATTACTTCTCTTCTGGTGGTCCAAATCCCCATCTGCAGGCAGCGGCGG CGGTGCAAAATGTTTTTCATAATGTTAACCATACGGTTTTGTATTTATCG TAAGAGTCAATCGGTCTTTCAACACATTTCCATGAAACGATTAGCATGAA ATAAATCAAGGGAGAACCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp9-RA | 1005 | Srp9-RA | 149..972 | 1..824 | 4105 | 99.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7928504..7928744 | 1..241 | 99 | -> | Plus |
chr3L | 7928810..7929387 | 242..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..234 | 101..334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..234 | 101..334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..234 | 101..334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..234 | 101..334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..234 | 101..334 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..819 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..819 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 3..821 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 1..819 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp9-RA | 3..821 | 1..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7936375..7936615 | 1..241 | 100 | -> | Plus |
3L | 7936681..7937258 | 242..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7936375..7936615 | 1..241 | 100 | -> | Plus |
3L | 7936681..7937258 | 242..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7936375..7936615 | 1..241 | 100 | -> | Plus |
3L | 7936681..7937258 | 242..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7929475..7929715 | 1..241 | 100 | -> | Plus |
arm_3L | 7929781..7930358 | 242..819 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7929475..7929715 | 1..241 | 100 | -> | Plus |
3L | 7929781..7930358 | 242..819 | 99 | Plus |
Translation from 100 to 333
> RE23260.hyp MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQ YKAENMPDLRKIEKITSNLVGHMASKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp9-PA | 77 | CG8268-PA | 1..77 | 1..77 | 409 | 100 | Plus |
Translation from 100 to 333
> RE23260.pep MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQ YKAENMPDLRKIEKITSNLVGHMASKE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23801-PA | 77 | GF23801-PA | 1..77 | 1..77 | 388 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14456-PA | 77 | GG14456-PA | 1..77 | 1..77 | 390 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14982-PA | 77 | GH14982-PA | 1..77 | 1..77 | 384 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp9-PA | 77 | CG8268-PA | 1..77 | 1..77 | 409 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13144-PA | 77 | GI13144-PA | 1..77 | 1..77 | 380 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18044-PA | 175 | GL18044-PA | 1..75 | 1..74 | 308 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20942-PA | 77 | GA20942-PA | 1..77 | 1..77 | 382 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25006-PA | 77 | GM25006-PA | 1..77 | 1..77 | 399 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14042-PA | 77 | GD14042-PA | 1..77 | 1..77 | 413 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13892-PA | 77 | GJ13892-PA | 1..77 | 1..77 | 385 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20584-PA | 77 | GK20584-PA | 1..77 | 1..77 | 384 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21646-PA | 77 | GE21646-PA | 1..77 | 1..77 | 390 | 93.5 | Plus |