BDGP Sequence Production Resources |
Search the DGRC for RE23430
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 234 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG42343-RD |
Protein status: | RE23430.pep: gold |
Preliminary Size: | 423 |
Sequenced Size: | 1569 |
Gene | Date | Evidence |
---|---|---|
CG12565 | 2001-12-14 | Blastp of sequenced clone |
CG12565 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12565 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12565 | 2008-04-29 | Release 5.5 accounting |
CG42343 | 2008-08-15 | Release 5.9 accounting |
CG42343 | 2008-12-18 | 5.12 accounting |
1569 bp (1569 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071183
> RE23430.complete AGTGCTCGGGCAACTTCCTAGCGCGTCGGTTCAGTTCAGTCCAGTGGATT CGAGACACGAAAGGACTCAGTTTCAAACTAAAAATTCCAAAGTTTCGAAA ACGGGTTTCGAGTGGCGCGAAACAACAACGATACAATGATACAATTACTC TAGCTGAAAGTCGAGAGAAGAGTTTTTGACAAGTGTTAGTTGATTATTTT CAAGTTTTTTTTTAGTGTTGGCCAGTGCTTTGGACTAGTTTCGAAGCTTT GCTTGTTTTTTCGAACAAGCATCCCCATCAAAGTAAACACATGAGAAGTC ATGCTAATGGAAGCTAGGACAGTATTATGATGAACTTGCTGGTGGTGAAG GAGAGCGGCGAGCGGATCGCCGACATCAGCTGTAGCCAGGAGCATACTAC CAAATTTTCACCAAAATTGTCCCAAGTAGCCAAACATCGCAAGCTGGCGC AGCTCGAGATTGCATCAGGTTCGGGATTGGTGGGATTAGGAACGGGAACT GGTACCGGAAGTGGGTGTGGTCCAGCTATTCGGTGGCAGCTATTGCTACT GCTCTTGCTCGGTAACTGCATTGATCTTACCGTTTCGAACAAAATCTCCT CAGTGGGCGCCTTCGAGCCGGACTTTGTGATTCCGCTGGAGAACGTGACC ATCGCCCAAGGTCGGGACGCGACCTTCACGTGCGTGGTGAACAACCTCGG TGGTCATCGGGTGAGTGGTGACGGTTCGTCAGCCCCAGCCAAGGTATGTA TCGGTTTCAAGCGCAGCGTTGAATTCTCAACTTCCGTTCCGTTTCGATTA GTTCCGGTTCGTTTCGTTTCGTTTCAACTCCTTTCGTTTTGTCCCCGATC TCTTTCGTTCTGTTTGATTTGTCATTTCAAGTGCACAATATGCATATAAC TAATACAGTTTTAACGATTTTCCAATCTAAAAGGCACCAATAACAATAAC GAGTTCCCAACTGCACCACAATTATCGCAATTATGTAACCGTTAAGCGCA CCTATTCCTATTATACGCATATCTATAGTTAACTACCAGTATAACAATCA TAGCACCATACAATATTTACTATATATATAGTACCCACAAAAAATATGTA TATAGAGCACTCTGCATATTAAACGCCTCGATGCACAGCAACAGCAACAG CAACAGCAACGACTGAGGCAAAAGGACCAAACAATAACAGTAGCGAAAAT TTCAACAATCGCATTGAATCGATTTCGAATCGATTTGAATCGCATCGACG AATCGAACAGCGGCATCAAAATAAATTTAAATAAACATGACACAATTTGT GCGATGCGAAACCGAAAACGAAATATGCATACCTTATTGTTTTTATCATC GTATTATATTATTATTAGCACTCACATTTAATTTATAACACTCACAAAGC GGGGAGTCCGGGGACCCGGGGATGCGGGGATCCGGGTTCCCGACTCCGGC ATTGTGCCAAAGAATTTAAGCGATAAAAGAGCAGCGCACAAAAACTACCA GCTGAAAGCGATTGTTGTTAACAACAATAAACAATCGTGAATCGTTAAAA CACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42343-RD | 1565 | CG42343-RD | 1..1561 | 1..1561 | 7790 | 99.9 | Plus |
CG42343-RE | 1480 | CG42343-RE | 185..1476 | 270..1561 | 6445 | 99.9 | Plus |
CG42343-RC | 2321 | CG42343-RC | 22..766 | 1..745 | 3725 | 100 | Plus |
CG42343-RE | 1480 | CG42343-RE | 1..184 | 1..184 | 920 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 21305933..21306913 | 1553..573 | 4890 | 99.9 | Minus |
chrX | 22417052 | chrX | 21307580..21307885 | 573..268 | 1530 | 100 | Minus |
chrX | 22417052 | chrX | 21322624..21322892 | 269..1 | 1345 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21440767..21441755 | 1561..573 | 4930 | 99.9 | Minus |
X | 23542271 | X | 21442422..21442727 | 573..268 | 1530 | 100 | Minus |
X | 23542271 | X | 21457466..21457734 | 269..1 | 1345 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21425859..21426847 | 1561..573 | 4930 | 99.8 | Minus |
X | 23527363 | X | 21427514..21427819 | 573..268 | 1530 | 100 | Minus |
X | 23527363 | X | 21442558..21442826 | 269..1 | 1345 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2461 | 1135..1213 | 166 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6804 | 1112..1213 | 165 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2681 | 1137..1223 | 163 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6858 | 1136..1213 | 153 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2434 | 1136..1198 | 149 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2432 | 1136..1208 | 146 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6834 | 1136..1213 | 146 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2413 | 1136..1213 | 141 | 68.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6852 | 1136..1213 | 141 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6880 | 1136..1214 | 140 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6800 | 1136..1194 | 138 | 72.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1130..1179 | 1136..1187 | 138 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2429 | 1136..1208 | 136 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2392 | 1136..1213 | 135 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2393 | 1135..1208 | 133 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2420 | 1136..1208 | 129 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2996 | 1123..1284 | 128 | 58.3 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1041..1126 | 1309..1392 | 128 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6808..6873 | 1135..1198 | 127 | 68.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1097..1154 | 1136..1188 | 125 | 74.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1161 | 1136..1207 | 123 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2910..2996 | 1112..1199 | 122 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6813 | 1135..1213 | 121 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 1136..1190 | 119 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2393..2556 | 1135..1287 | 118 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6919 | 1136..1180 | 117 | 73.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1158 | 1136..1207 | 113 | 65.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 21306705..21306912 | 574..781 | 100 | <- | Minus |
chrX | 21307580..21307883 | 270..573 | 100 | <- | Minus |
chrX | 21322624..21322892 | 1..269 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RE | 1..573 | 327..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RE | 1..573 | 327..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 1..573 | 327..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RE | 1..573 | 327..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 1..573 | 327..899 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 1..1553 | 1..1553 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 1..1553 | 1..1553 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 5..1557 | 1..1553 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 1..1553 | 1..1553 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG42343-RD | 5..1557 | 1..1553 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21440775..21441754 | 574..1553 | 99 | <- | Minus |
X | 21442422..21442725 | 270..573 | 100 | <- | Minus |
X | 21457466..21457734 | 1..269 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21440775..21441754 | 574..1553 | 99 | <- | Minus |
X | 21442422..21442725 | 270..573 | 100 | <- | Minus |
X | 21457466..21457734 | 1..269 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21440775..21441754 | 574..1553 | 99 | <- | Minus |
X | 21442422..21442725 | 270..573 | 100 | <- | Minus |
X | 21457466..21457734 | 1..269 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 21328493..21328761 | 1..269 | 100 | Minus | |
arm_X | 21311802..21312781 | 574..1553 | 99 | <- | Minus |
arm_X | 21313449..21313752 | 270..573 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21425867..21426846 | 574..1553 | 99 | <- | Minus |
X | 21427514..21427817 | 270..573 | 100 | <- | Minus |
X | 21442558..21442826 | 1..269 | 100 | Minus |
Translation from 326 to 898
> RE23430.pep MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21351-PA | 146 | GF21351-PA | 1..132 | 1..144 | 402 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17534-PA | 170 | GG17534-PA | 1..169 | 1..163 | 665 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DIP-beta-PE | 190 | CG12565-PB | 1..190 | 1..190 | 983 | 100 | Plus |
DIP-beta-PD | 190 | CG12565-PA | 1..190 | 1..190 | 983 | 100 | Plus |
DIP-beta-PF | 555 | CG42343-PF | 1..140 | 1..140 | 712 | 100 | Plus |
DIP-beta-PC | 555 | CG42343-PC | 1..140 | 1..140 | 712 | 100 | Plus |
DIP-beta-PG | 534 | CG42343-PG | 1..132 | 1..142 | 595 | 85.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15978-PA | 144 | GL15978-PA | 1..144 | 2..149 | 318 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22891-PA | 197 | GA22891-PA | 79..152 | 70..153 | 260 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22618-PA | 160 | GM22618-PA | 1..159 | 1..158 | 649 | 95 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15494-PA | 74 | GD15494-PA | 8..73 | 93..158 | 337 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15564-PA | 183 | GJ15564-PA | 66..154 | 38..147 | 279 | 62.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15297-PA | 203 | GE15297-PA | 1..193 | 1..180 | 665 | 79.3 | Plus |
Translation from 326 to 898
> RE23430.hyp MMNLLVVKESGERIADISCSQEHTTKFSPKLSQVAKHRKLAQLEIASGSG LVGLGTGTGTGSGCGPAIRWQLLLLLLLGNCIDLTVSNKISSVGAFEPDF VIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVCIGFKRSVEF STSVPFRLVPVRFVSFQLLSFCPRSLSFCLICHFKCTICI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG42343-PE | 190 | CG12565-PB | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PD | 190 | CG12565-PA | 1..190 | 1..190 | 983 | 100 | Plus |
CG42343-PF | 555 | CG42343-PF | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PC | 555 | CG42343-PC | 1..140 | 1..140 | 712 | 100 | Plus |
CG42343-PG | 534 | CG42343-PG | 1..132 | 1..142 | 595 | 85.9 | Plus |