BDGP Sequence Production Resources |
Search the DGRC for RE23444
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 234 |
Well: | 44 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rbp2-RB |
Protein status: | RE23444.pep: gold |
Sequenced Size: | 1826 |
Gene | Date | Evidence |
---|---|---|
Rbp2-RB | 2010-11-11 | Gleaning Pick By Joe Carlson |
1826 bp assembled on 2011-01-31
GenBank Submission: BT125964.1
> RE23444.complete AAAAACATGGCTGGAAGAGGTGGTTATGAACACGCTAGCGGATTCGGTGG GGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTCATCGCATTTG TCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGATCAAAATATTC CAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACCGGGAAACGGA TCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTGGACAATCTGG AGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGATCTGTCGGCG CCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATCGCCCTGGTGG CGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGACGGCGGCAGAG ACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAGCAGTCAGTCC TACAGCCGGGGAGGTCCTGGCACTGGCGGCGGCGGTCGGGAGGGCGGCGG CGGTTCGGGTAATCGCGGCGATAGTAGAGATCGGCCGGCAAATCGTGGTC GGTACGGCAGTTTCAATAACGACGATCGACCATTCGAGCGTAACCAGGAT CGGGATCGCGGTCAGCGGGAAGGCAGCTATGGCAACCAGTCGCGCGACGG CGATCGCTACAACAACTTCAACCGGCACCGCGACCGCGAGCGCACCCACT ACAATCCCAACCAGCAGAGCGAACGTCCCAGTGGCGGCATGACCGGCCTT GGCGGCGGCTCCGGCGGATCAGGAGGCCTAGGCGTTGGCGGTGGTTCCTC AATGGGCGCCATTGACGACAATGAGCGGCCACGTCTGCAGCTGAAGCCAC GGACCATTGCCGCGCCCATTAACGCGGTGGCAGAGACCAAGCAATCGGCC TCGATCTTTGGCAACGCCAAGCCGCGCGAAGAGAAGCTGAAGGAGCTGCA GCAGAATGTCAATCACAACGGCGATAACTAGAGGGCTGGAGTTGGTCCGC AATACAATATATGCCTGATATGATATTTTGATGTGCGAGAACGAGATAAT CCGAGATAGAGGGAGAGAAGGCGAGGAAGAGAAGAGGAGGAAGCAGAAAT AGCAAGGGGGGAGGAGGAGGAGGAGGAGGAGGATGATGATGATGATGACG ATGACAAGGAGCATCAGCAGCATGCATATATAAACACATACATTAATTAA TAACACTACGCTACATACCTATTATATACGAATGATATGTACTACATTAC AAGAACGAAGATGGAACAACAGGCTGGCCTCTGTGTCTCTGTGTCAGTGT CCAGTGTCAGTCAGCAAGCAACTTAACAACAAGCAACAAGCAACATGCAA CACGCAACATCAGCAACAAAGCCAAGCAGCAATAATGCAACTATTCTAAC TCTTTGCAACCAGAAAACATCCGCAACAGCAATGGAAAGTCTTTAAATGT TAGTCCTTAAGCAGCGATAAACTTTAGTCTCGTGCATATGGCCAATATAT ATAGTATATATATATATATGGTATATATATATATACGGTTATGTGCGCTT CATTGTACAGCAGCTGTATGCACGCTGCTATTTGTTAGTTAAGTGATGGA TATAAACCAACAAAACAAAACATAAGAGGAGGAAAGTTCTACCATTAAGG TATAAATAGTAAACAAAAAACAAGTAAAACAAAACAAAAAAATGAAAACA ATGCAAAACAAAAAAGAAAAAACTCGAAAAACAAAGCAAAAATCGAAAAC AAAAACTTTTTGACAAAACGTTCAGCGTAGCAGGCAGGCAATTTATACAG TTTATATAGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 16341642..16342638 | 814..1810 | 4970 | 99.9 | Plus |
chrX | 22417052 | chrX | 16339599..16339903 | 37..341 | 1525 | 100 | Plus |
chrX | 22417052 | chrX | 16340997..16341283 | 528..814 | 1435 | 100 | Plus |
chrX | 22417052 | chrX | 16340037..16340225 | 341..529 | 945 | 100 | Plus |
chr3R | 27901430 | chr3R | 26548986..26549160 | 67..241 | 350 | 80 | Plus |
chrX | 22417052 | chrX | 16338408..16338444 | 2..38 | 185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 16451918..16452930 | 814..1826 | 5035 | 99.8 | Plus |
X | 23542271 | X | 16449875..16450179 | 37..341 | 1525 | 100 | Plus |
X | 23542271 | X | 16451273..16451559 | 528..814 | 1435 | 100 | Plus |
X | 23542271 | X | 16450313..16450501 | 341..529 | 945 | 100 | Plus |
3R | 32079331 | 3R | 30726475..30726649 | 67..241 | 350 | 80 | Plus |
X | 23542271 | X | 16448693..16448729 | 2..38 | 185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 16460016..16461028 | 814..1826 | 5035 | 99.8 | Plus |
X | 23527363 | X | 16457973..16458277 | 37..341 | 1525 | 100 | Plus |
X | 23527363 | X | 16459371..16459657 | 528..814 | 1435 | 100 | Plus |
X | 23527363 | X | 16458411..16458599 | 341..529 | 945 | 100 | Plus |
3R | 31820162 | 3R | 30467306..30467480 | 67..241 | 350 | 80 | Plus |
X | 23527363 | X | 16456791..16456827 | 2..38 | 185 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 674..788 | 1600..1715 | 163 | 64.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16340999..16341283 | 530..814 | 100 | -> | Plus |
chrX | 16338406..16338444 | 1..38 | 97 | -> | Plus |
chrX | 16339601..16339903 | 39..341 | 100 | == | Plus |
chrX | 16340101..16340225 | 405..529 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 1..975 | 7..981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 1..975 | 7..981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 1..975 | 7..981 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 15..1825 | 1..1810 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 27..1837 | 1..1810 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rbp2-RB | 27..1837 | 1..1810 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16448691..16448729 | 1..38 | 97 | -> | Plus |
X | 16449877..16450179 | 39..341 | 100 | -> | Plus |
X | 16450314..16450501 | 342..529 | 100 | -> | Plus |
X | 16451275..16451559 | 530..814 | 100 | -> | Plus |
X | 16451919..16452914 | 815..1810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16448691..16448729 | 1..38 | 97 | -> | Plus |
X | 16449877..16450179 | 39..341 | 100 | -> | Plus |
X | 16450314..16450501 | 342..529 | 100 | -> | Plus |
X | 16451275..16451559 | 530..814 | 100 | -> | Plus |
X | 16451919..16452914 | 815..1810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16448691..16448729 | 1..38 | 97 | -> | Plus |
X | 16449877..16450179 | 39..341 | 100 | -> | Plus |
X | 16450314..16450501 | 342..529 | 100 | -> | Plus |
X | 16451275..16451559 | 530..814 | 100 | -> | Plus |
X | 16451919..16452914 | 815..1810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16343910..16344212 | 39..341 | 100 | -> | Plus |
arm_X | 16342724..16342762 | 1..38 | 97 | -> | Plus |
arm_X | 16344347..16344534 | 342..529 | 100 | -> | Plus |
arm_X | 16345308..16345592 | 530..814 | 100 | -> | Plus |
arm_X | 16345952..16346947 | 815..1810 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16457975..16458277 | 39..341 | 100 | -> | Plus |
X | 16458412..16458599 | 342..529 | 100 | -> | Plus |
X | 16459373..16459657 | 530..814 | 100 | -> | Plus |
X | 16460017..16461012 | 815..1810 | 100 | Plus | |
X | 16456789..16456827 | 1..38 | 97 | -> | Plus |
Translation from 0 to 980
> RE23444.pep KNMAGRGGYEHASGFGGDRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIF QDFEVKYVRLVKDRETDQFKGFCYVEFETLDNLERALECDGRIKLDDLSA PLRIDIADRRKNDRPGGGVGGGNGGMTRGDGGRDGFQKRGPPRQGGSSQS YSRGGPGTGGGGREGGGGSGNRGDSRDRPANRGRYGSFNNDDRPFERNQD RDRGQREGSYGNQSRDGDRYNNFNRHRDRERTHYNPNQQSERPSGGMTGL GGGSGGSGGLGVGGGSSMGAIDDNERPRLQLKPRTIAAPINAVAETKQSA SIFGNAKPREEKLKELQQNVNHNGDN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19517-PA | 369 | GF19517-PA | 1..369 | 3..326 | 1109 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17966-PA | 358 | GG17966-PA | 1..358 | 3..326 | 1573 | 89.1 | Plus |
Dere\GG11771-PA | 495 | GG11771-PA | 62..150 | 23..111 | 402 | 78.7 | Plus |
Dere\GG11771-PA | 495 | GG11771-PA | 342..446 | 220..311 | 203 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24789-PA | 145 | GH24789-PA | 14..145 | 180..326 | 560 | 77.5 | Plus |
Dgri\GH22433-PA | 113 | GH22433-PA | 1..113 | 3..114 | 526 | 89.4 | Plus |
Dgri\GH14211-PA | 410 | GH14211-PA | 56..143 | 24..111 | 378 | 77.3 | Plus |
Dgri\GH14211-PA | 410 | GH14211-PA | 302..395 | 205..319 | 173 | 40.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
eIF4H1-PB | 324 | CG4429-PB | 1..324 | 3..326 | 1741 | 100 | Plus |
eIF4H1-PA | 325 | CG4429-PA | 1..325 | 3..326 | 1729 | 99.7 | Plus |
eIF4H1-PC | 358 | CG4429-PC | 1..358 | 3..326 | 1685 | 90.5 | Plus |
eIF4H1-PE | 317 | CG4429-PE | 5..317 | 14..326 | 1681 | 100 | Plus |
eIF4H1-PD | 388 | CG4429-PD | 1..388 | 3..326 | 1644 | 83.5 | Plus |
eIF4H2-PC | 459 | CG1340-PC | 34..427 | 2..311 | 584 | 39.5 | Plus |
eIF4H2-PA | 459 | CG1340-PA | 34..427 | 2..311 | 584 | 39.5 | Plus |
caz-PD | 355 | CG3606-PD | 47..337 | 5..266 | 199 | 28.6 | Plus |
caz-PC | 384 | CG3606-PC | 76..366 | 5..266 | 199 | 28.6 | Plus |
caz-PB | 399 | CG3606-PB | 91..381 | 5..266 | 199 | 28.6 | Plus |
Hrb87F-PE | 385 | CG12749-PE | 118..339 | 33..277 | 190 | 29.2 | Plus |
Hrb87F-PD | 385 | CG12749-PD | 118..339 | 33..277 | 190 | 29.2 | Plus |
Hrb87F-PC | 385 | CG12749-PC | 118..339 | 33..277 | 190 | 29.2 | Plus |
Hrb87F-PA | 385 | CG12749-PA | 118..339 | 33..277 | 190 | 29.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 234..367 | 115..270 | 178 | 35.9 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 234..367 | 115..270 | 178 | 35.9 | Plus |
CG5787-PB | 950 | CG5787-PB | 270..442 | 112..270 | 178 | 31.8 | Plus |
CG5787-PA | 950 | CG5787-PA | 270..442 | 112..270 | 178 | 31.8 | Plus |
Hrb98DE-PE | 360 | CG9983-PE | 120..350 | 33..263 | 169 | 26.4 | Plus |
Hrb98DE-PF | 361 | CG9983-PF | 121..351 | 33..263 | 169 | 26.4 | Plus |
Hrb98DE-PD | 361 | CG9983-PD | 121..351 | 33..263 | 169 | 26.4 | Plus |
Hrb98DE-PA | 364 | CG9983-PA | 124..354 | 33..263 | 169 | 26.4 | Plus |
Hrb98DE-PC | 365 | CG9983-PC | 125..355 | 33..263 | 169 | 26.4 | Plus |
Hrb98DE-PB | 365 | CG9983-PB | 125..355 | 33..263 | 169 | 26.4 | Plus |
CG5172-PD | 172 | CG5172-PD | 30..165 | 116..269 | 162 | 30.5 | Plus |
glo-PA | 586 | CG6946-PA | 146..394 | 30..269 | 160 | 25.9 | Plus |
glo-PB | 586 | CG6946-PB | 146..394 | 30..269 | 160 | 25.9 | Plus |
snRNP-U1-70K-PC | 448 | CG8749-PC | 97..323 | 26..242 | 152 | 28.5 | Plus |
snRNP-U1-70K-PA | 448 | CG8749-PA | 97..323 | 26..242 | 152 | 28.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21487-PA | 206 | GI21487-PA | 1..153 | 3..153 | 624 | 85.2 | Plus |
Dmoj\GI22119-PA | 309 | GI22119-PA | 198..278 | 214..309 | 203 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20267-PA | 300 | GL20267-PA | 1..285 | 3..325 | 1033 | 71.8 | Plus |
Dper\GL13513-PA | 471 | GL13513-PA | 98..190 | 20..112 | 397 | 74.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18178-PB | 335 | GA18178-PB | 1..334 | 3..325 | 1212 | 84.8 | Plus |
Dpse\GA18178-PA | 368 | GA18178-PA | 1..367 | 3..325 | 1164 | 77.2 | Plus |
Dpse\GA12257-PB | 471 | GA12257-PB | 98..190 | 20..112 | 397 | 74.2 | Plus |
Dpse\GA12257-PB | 471 | GA12257-PB | 371..453 | 220..312 | 181 | 49.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13442-PA | 358 | GM13442-PA | 1..358 | 3..326 | 1591 | 90.2 | Plus |
Dsec\GM12901-PA | 502 | GM12901-PA | 354..458 | 220..311 | 195 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17286-PA | 256 | GD17286-PA | 12..256 | 115..326 | 1000 | 86.1 | Plus |
Dsim\GD21542-PA | 472 | GD21542-PA | 324..428 | 220..311 | 200 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19028-PA | 332 | GJ19028-PA | 1..332 | 3..326 | 1207 | 77.2 | Plus |
Dvir\GJ24240-PA | 454 | GJ24240-PA | 41..129 | 23..111 | 381 | 75.3 | Plus |
Dvir\GJ24240-PA | 454 | GJ24240-PA | 339..422 | 214..312 | 191 | 46.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25675-PA | 354 | GK25675-PA | 1..352 | 3..325 | 1115 | 75.1 | Plus |
Dwil\GK14152-PA | 461 | GK14152-PA | 71..160 | 22..111 | 398 | 76.7 | Plus |
Dwil\GK14152-PA | 461 | GK14152-PA | 342..434 | 224..312 | 177 | 48.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17274-PA | 358 | GE17274-PA | 1..358 | 3..326 | 1573 | 89.1 | Plus |
Dyak\GE10899-PA | 502 | GE10899-PA | 74..162 | 23..111 | 400 | 78.7 | Plus |
Dyak\GE10899-PA | 502 | GE10899-PA | 356..460 | 220..311 | 198 | 46.2 | Plus |
Translation from 6 to 980
> RE23444.hyp MAGRGGYEHASGFGGDRASKQLPTEPPFIAFVGNLPQGLVQGDVIKIFQD FEVKYVRLVKDRETDQFKGFCYVEFETLDNLERALECDGRIKLDDLSAPL RIDIADRRKNDRPGGGVGGGNGGMTRGDGGRDGFQKRGPPRQGGSSQSYS RGGPGTGGGGREGGGGSGNRGDSRDRPANRGRYGSFNNDDRPFERNQDRD RGQREGSYGNQSRDGDRYNNFNRHRDRERTHYNPNQQSERPSGGMTGLGG GSGGSGGLGVGGGSSMGAIDDNERPRLQLKPRTIAAPINAVAETKQSASI FGNAKPREEKLKELQQNVNHNGDN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rbp2-PB | 324 | CG4429-PB | 1..324 | 1..324 | 1741 | 100 | Plus |
Rbp2-PA | 325 | CG4429-PA | 1..325 | 1..324 | 1729 | 99.7 | Plus |
Rbp2-PC | 358 | CG4429-PC | 1..358 | 1..324 | 1685 | 90.5 | Plus |
Rbp2-PE | 317 | CG4429-PE | 5..317 | 12..324 | 1681 | 100 | Plus |
Rbp2-PD | 388 | CG4429-PD | 1..388 | 1..324 | 1644 | 83.5 | Plus |