Clone RE23450 Report

Search the DGRC for RE23450

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:234
Well:50
Vector:pFlc-1
Associated Gene/TranscriptCG14210-RA
Protein status:RE23450.pep: gold
Preliminary Size:423
Sequenced Size:564

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14210 2001-12-14 Blastp of sequenced clone
CG14210 2002-01-01 Sim4 clustering to Release 2
CG14210 2003-01-01 Sim4 clustering to Release 3
CG14210 2008-04-29 Release 5.5 accounting
CG14210 2008-08-15 Release 5.9 accounting
CG14210 2008-12-18 5.12 accounting

Clone Sequence Records

RE23450.complete Sequence

564 bp (564 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071184

> RE23450.complete
GACGTGCACTCGTGTTTTGTATTTGTGTTGTTTGCATTTGATTTCATATT
AGACTAAACCGAACGCAAAATGAGTGAATCCGCACCGGAAACTGTGCCAG
CCAAGAAGCCGGCAAAGGCCAAGAAGGCGGCAAAGCCGGAGAACAGCATA
CCACGCGGCCAGCCCAAGTCGAACCGGCCGTGGAAGACGCCCAAGCAGAA
ATTTAGCAAGATTAAGAAGACCGTTAACCGACTGTCCTTCGAAAAGAAGA
CGGCCCTGCGCGACGAGCTGCGCTACATCAAGGAGCGCTCCAAGGAGATC
AAGGACAAGCGCAAGGAGGATGCCGTCCAAAAGCACCAGCGCCGCGTGGA
GAATGCCGAGCGCCGGCTGGCGAACGAGCGCCGCTCGGAGGTCGTCCAGG
TCATCAAGAATCCCGCCAAGCTGAAGCGCATGAAGAAGAAACAGATGCGC
ATGATCGAGAAGCGGGACGTCAGCCAGGTGAAGGTGGTCTGAGGTGGCTC
CATTAGATTAACTTGTATTTTTTGATAAATAAATCTAGTTTTAATGCCAA
AAAAAAAAAAAAAA

RE23450.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-RA 701 CG14210-RA 132..684 2..554 2750 99.8 Plus
CG12788-RA 1746 CG12788-RA 1586..1746 554..394 790 99.3 Minus
Tim9b-RC 1746 Tim9b-RC 1586..1746 554..394 790 99.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:35:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19505262..19505609 201..548 1740 100 Plus
chrX 22417052 chrX 19505000..19505198 2..200 995 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19616470..19616823 201..554 1755 99.7 Plus
X 23542271 X 19616208..19616406 2..200 995 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19624568..19624921 201..554 1755 99.7 Plus
X 23527363 X 19624306..19624504 2..200 995 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:35:30 has no hits.

RE23450.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:36:33 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19505262..19505609 201..548 100   Plus
chrX 19504999..19505198 1..200 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:14 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 70..492 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:36:27 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 70..492 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:24:17 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 70..492 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:20:16 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 70..492 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:14 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 1..423 70..492 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:43:36 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 2..548 2..548 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:36:27 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 2..548 2..548 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:17 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 12..559 1..548 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:20:16 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 2..548 2..548 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:14 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
CG14210-RA 12..559 1..548 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:33 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
X 19616207..19616406 1..200 99 -> Plus
X 19616470..19616817 201..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:33 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
X 19616207..19616406 1..200 99 -> Plus
X 19616470..19616817 201..548 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:36:33 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
X 19616207..19616406 1..200 99 -> Plus
X 19616470..19616817 201..548 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:17 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19510240..19510439 1..200 99 -> Plus
arm_X 19510503..19510850 201..548 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:57:35 Download gff for RE23450.complete
Subject Subject Range Query Range Percent Splice Strand
X 19624568..19624915 201..548 100   Plus
X 19624305..19624504 1..200 99 -> Plus

RE23450.pep Sequence

Translation from 69 to 491

> RE23450.pep
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVV*

RE23450.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20411-PA 148 GF20411-PA 32..148 24..140 540 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19238-PA 140 GG19238-PA 1..140 1..140 675 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24941-PA 179 GH24941-PA 54..179 15..140 555 87.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PB 140 CG14210-PB 1..140 1..140 700 100 Plus
CG14210-PA 140 CG14210-PA 1..140 1..140 700 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11118-PA 199 GI11118-PA 83..199 24..140 535 90.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27058-PA 146 GL27058-PA 32..146 26..140 523 87.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12825-PA 146 GA12825-PA 32..146 26..140 517 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22973-PA 140 GM22973-PA 1..140 1..140 684 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15973-PA 181 GJ15973-PA 56..181 15..140 557 88.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10060-PA 140 GK10060-PA 24..140 24..140 533 89.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15857-PA 140 GE15857-PA 1..140 1..140 677 97.9 Plus

RE23450.hyp Sequence

Translation from 69 to 491

> RE23450.hyp
MSESAPETVPAKKPAKAKKAAKPENSIPRGQPKSNRPWKTPKQKFSKIKK
TVNRLSFEKKTALRDELRYIKERSKEIKDKRKEDAVQKHQRRVENAERRL
ANERRSEVVQVIKNPAKLKRMKKKQMRMIEKRDVSQVKVV*

RE23450.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14210-PB 140 CG14210-PB 1..140 1..140 700 100 Plus
CG14210-PA 140 CG14210-PA 1..140 1..140 700 100 Plus