Clone RE23541 Report

Search the DGRC for RE23541

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:235
Well:41
Vector:pFlc-1
Associated Gene/TranscriptCG10874-RA
Protein status:RE23541.pep: gold
Preliminary Size:1338
Sequenced Size:1594

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10874 2001-12-14 Blastp of sequenced clone
CG10874 2002-01-01 Sim4 clustering to Release 2
CG10874 2003-01-01 Sim4 clustering to Release 3
CG10874 2008-04-29 Release 5.5 accounting
CG10874 2008-08-15 Release 5.9 accounting
CG10874 2008-12-18 5.12 accounting

Clone Sequence Records

RE23541.complete Sequence

1594 bp (1594 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071186

> RE23541.complete
AGAAATATCGAAGTGCGATAGGCCCCGATAGTTTCGCCTCCAAATAAAAA
CAAAGAAAATTCGGTTTTCTTGACCGAATTTAGCGTAATCTAACACGGAA
AATCAGCCAAATGGAGCCCAACGATGAGGTGGTGGAGCGACAGAAGCTGG
TGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAATCGGCC
ACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAG
CGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCGAGAGGA
CGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAAGCGGCC
ACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGCGCACGG
CGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGACCCGGC
CGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACCAACAGT
GCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCTAGCACC
TGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACAACAACG
ATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAATCAGAAC
ACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCCAAACGC
CAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATCATTCCT
TTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGA
CTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTCCGGCTG
CACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCCTGGCCA
AATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAGCACGGC
AACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCTGATGCA
GCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGAGCCACA
CGGGTCTCTGAGATTTGGCCCAGCCGCAGGCCTGGGATCAACGCCTGCTC
TGGCTCTGAGCACACCTATGGGGAAACGAGGAATGCCAAAGTGGAGCTGG
ATTGGGATTTCACACAAGACTAGCGACTTTTCGACGGTGCGGACAGTTGG
GATACTGTGTAAATATTTTAAGTTGTACGCTTAAGTGGGCGGATTCGATG
GGCTTCTCATGCTAAATAGTTTAGCGAACTCGCAGTGATTGTGAAACTAA
TTTAGATTGTCTTCGCGTAGCCATAGCCATAGCGTTAAATTATTACTATA
ATAGACCAAGGGTGCCAAGGGGTGGTGCTAAAACGAATTATTTCATTGCA
ATTCGATTCGACTCGATTTGATTGATGTGTGTGCTGCAGGTTATCAGGCT
TCGATAATGATGCGAATCTGTTCCGCTTATTGTTTGTTATAGTTATTTGC
AATATACATAGACACCTAATCATACACATGTACGAAACTCGGACCCATTA
AAGTTATCATTTTTATAAATAAAAAAAAGAAAAAAAAAAAAAAA

RE23541.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-RA 1711 CG10874-RA 72..1640 3..1571 7845 100 Plus
CG10874.a 1714 CG10874.a 72..1643 3..1571 7790 99.8 Plus
CG10874-RB 1390 CG10874-RB 535..1346 760..1571 4060 100 Plus
CG10874-RB 1390 CG10874-RB 72..537 3..468 2330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2189663..2190394 1571..840 3615 99.6 Minus
chr2L 23010047 chr2L 2190456..2190830 841..467 1875 100 Minus
chr2L 23010047 chr2L 2191600..2191840 468..228 1205 100 Minus
chr2L 23010047 chr2L 2191897..2192121 227..3 1125 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2189913..2190644 1571..840 3660 100 Minus
2L 23513712 2L 2190706..2191080 841..467 1875 100 Minus
2L 23513712 2L 2191850..2192090 468..228 1205 100 Minus
2L 23513712 2L 2192147..2192371 227..3 1125 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2189913..2190644 1571..840 3660 100 Minus
2L 23513712 2L 2190706..2191080 841..467 1875 100 Minus
2L 23513712 2L 2191850..2192090 468..228 1205 100 Minus
2L 23513712 2L 2192147..2192371 227..3 1125 100 Minus
Blast to na_te.dros performed 2019-03-16 01:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2474 488..643 201 62.7 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2492..2681 457..643 176 57.6 Plus
roo 9092 roo DM_ROO 9092bp 1058..1180 500..626 128 59.8 Plus

RE23541.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:36:40 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2191897..2192122 1..227 99   Minus
chr2L 2189663..2190393 841..1571 99 <- Minus
chr2L 2190457..2190828 469..840 100 <- Minus
chr2L 2191600..2191840 228..468 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:18 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 111..1061 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 111..1061 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 111..1061 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:11 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 111..1061 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:37:08 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..951 111..1061 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:07 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..1570 3..1571 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..1570 3..1571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 14..1584 1..1571 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:12 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 1..1570 3..1571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:37:08 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
CG10874-RA 14..1583 1..1570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:40 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189913..2190643 841..1571 100 <- Minus
2L 2190707..2191078 469..840 100 <- Minus
2L 2191850..2192090 228..468 100 <- Minus
2L 2192147..2192372 1..227 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:40 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189913..2190643 841..1571 100 <- Minus
2L 2190707..2191078 469..840 100 <- Minus
2L 2191850..2192090 228..468 100 <- Minus
2L 2192147..2192372 1..227 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:40 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189913..2190643 841..1571 100 <- Minus
2L 2190707..2191078 469..840 100 <- Minus
2L 2191850..2192090 228..468 100 <- Minus
2L 2192147..2192372 1..227 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2191850..2192090 228..468 100 <- Minus
arm_2L 2192147..2192372 1..227 99   Minus
arm_2L 2189913..2190643 841..1571 100 <- Minus
arm_2L 2190707..2191078 469..840 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:41 Download gff for RE23541.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2189913..2190643 841..1571 100 <- Minus
2L 2190707..2191078 469..840 100 <- Minus
2L 2191850..2192090 228..468 100 <- Minus
2L 2192147..2192372 1..227 99   Minus

RE23541.hyp Sequence

Translation from 110 to 1060

> RE23541.hyp
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT
ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH
SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD
QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE
QLSISIEQLQTSHTGL*

RE23541.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PA 316 CG10874-PA 1..316 1..316 1634 100 Plus
CG10874-PD 317 CG10874-PD 1..317 1..316 1622 99.7 Plus
CG10874-PB 218 CG10874-PB 1..122 1..122 605 98.4 Plus
CG10874-PC 219 CG10874-PC 1..122 1..122 605 98.4 Plus
CG10874-PB 218 CG10874-PB 66..218 163..316 514 70.7 Plus
CG10874-PC 219 CG10874-PC 66..219 163..316 502 70.3 Plus

RE23541.pep Sequence

Translation from 110 to 1060

> RE23541.pep
MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET
TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG
GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT
ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH
SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD
QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE
QLSISIEQLQTSHTGL*

RE23541.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15303-PA 285 GF15303-PA 1..285 1..316 1025 75.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24552-PA 326 GG24552-PA 1..326 1..316 1413 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11474-PA 313 GH11474-PA 1..313 1..316 1074 73.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10874-PA 316 CG10874-PA 1..316 1..316 1634 100 Plus
CG10874-PD 317 CG10874-PD 1..317 1..316 1622 99.7 Plus
CG10874-PB 218 CG10874-PB 1..122 1..122 605 98.4 Plus
CG10874-PC 219 CG10874-PC 1..122 1..122 605 98.4 Plus
CG10874-PB 218 CG10874-PB 66..218 163..316 514 70.7 Plus
CG10874-PC 219 CG10874-PC 66..219 163..316 502 70.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16960-PA 305 GI16960-PA 1..305 1..316 1079 75.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19419-PA 337 GL19419-PA 1..337 1..316 1230 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10612-PA 337 GA10612-PA 1..337 1..316 1230 81.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18261-PA 316 GM18261-PA 1..316 1..316 1651 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22870-PA 316 GD22870-PA 1..316 1..316 1641 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17216-PA 303 GJ17216-PA 1..303 1..316 1094 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15138-PA 328 GK15138-PA 1..328 1..316 1207 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15219-PA 319 GE15219-PA 1..319 1..316 1609 96.2 Plus