BDGP Sequence Production Resources |
Search the DGRC for RE23541
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 235 |
Well: | 41 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG10874-RA |
Protein status: | RE23541.pep: gold |
Preliminary Size: | 1338 |
Sequenced Size: | 1594 |
Gene | Date | Evidence |
---|---|---|
CG10874 | 2001-12-14 | Blastp of sequenced clone |
CG10874 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10874 | 2003-01-01 | Sim4 clustering to Release 3 |
CG10874 | 2008-04-29 | Release 5.5 accounting |
CG10874 | 2008-08-15 | Release 5.9 accounting |
CG10874 | 2008-12-18 | 5.12 accounting |
1594 bp (1594 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071186
> RE23541.complete AGAAATATCGAAGTGCGATAGGCCCCGATAGTTTCGCCTCCAAATAAAAA CAAAGAAAATTCGGTTTTCTTGACCGAATTTAGCGTAATCTAACACGGAA AATCAGCCAAATGGAGCCCAACGATGAGGTGGTGGAGCGACAGAAGCTGG TGAACGACGTGGAAACGGAGGAGGAAGCCCAAAGCGCACCGAAATCGGCC ACACCCGCCTCGCCCGCCGTTCCGAATATCAAAATCAAAGGCATATCCAG CGGCGAGACCACTCGCAGCAGAAACTCGGCCTCCTGCTCCATCGAGAGGA CGATATCCGAAAAGGAGAAGGACAAGAGCCAGGGCCAGGGTCAAGCGGCC ACCAAGGTGACCTATGTGAATGAGCGCCGGCCACGCCCGCAGGCGCACGG CGGCAGTGGCGGGGGTGCCGGCGACGAAAGATTCGAGTTCAAGACCCGGC CGCGCAAACTCCTGAAAGATCGTGATGAGTTGGAACCCACCACCAACAGT GCCAACAGCCTGAACGCCATCACCTTGGTGAGCAGCGAGTGGCTAGCACC TGATCCCACAGCCACAGACAATCACAACACCCCCAAGAACAACAACAACG ATAGCACGAAACCCAACAATAACAATCAGCACAGCAATAGCAATCAGAAC ACACCGCGATTGCAGCGCCGCAAGAATCCCACAGCGTCGATGCCAAACGC CAGTGCCCACAGCGATAAGTTCGACGATCGTCCAATAAAACATCATTCCT TTGTCTCCGAAGTTCCCGATGTTAAGCACATGGAAAGAGCTCTCCTCGGA CTGCTGGACGACTTTCACTCCGGCAAGCTGAGGGCATTCGGCTCCGGCTG CACAATGGACCAGATGACCAAGATTCGCGAGCAGCAGGAGAGCCTGGCCA AATTGCATTTCGAACTGGCTGCCGCCGAGGAGGATTCGCTGGAGCACGGC AACGAGTTCAACACCAACAAGGCGCAGGAGAACATGCTGCAGCTGATGCA GCGCCTGGAACAGCTATCCATCTCCATCGAGCAGCTGCAGACGAGCCACA CGGGTCTCTGAGATTTGGCCCAGCCGCAGGCCTGGGATCAACGCCTGCTC TGGCTCTGAGCACACCTATGGGGAAACGAGGAATGCCAAAGTGGAGCTGG ATTGGGATTTCACACAAGACTAGCGACTTTTCGACGGTGCGGACAGTTGG GATACTGTGTAAATATTTTAAGTTGTACGCTTAAGTGGGCGGATTCGATG GGCTTCTCATGCTAAATAGTTTAGCGAACTCGCAGTGATTGTGAAACTAA TTTAGATTGTCTTCGCGTAGCCATAGCCATAGCGTTAAATTATTACTATA ATAGACCAAGGGTGCCAAGGGGTGGTGCTAAAACGAATTATTTCATTGCA ATTCGATTCGACTCGATTTGATTGATGTGTGTGCTGCAGGTTATCAGGCT TCGATAATGATGCGAATCTGTTCCGCTTATTGTTTGTTATAGTTATTTGC AATATACATAGACACCTAATCATACACATGTACGAAACTCGGACCCATTA AAGTTATCATTTTTATAAATAAAAAAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10874-RA | 1711 | CG10874-RA | 72..1640 | 3..1571 | 7845 | 100 | Plus |
CG10874.a | 1714 | CG10874.a | 72..1643 | 3..1571 | 7790 | 99.8 | Plus |
CG10874-RB | 1390 | CG10874-RB | 535..1346 | 760..1571 | 4060 | 100 | Plus |
CG10874-RB | 1390 | CG10874-RB | 72..537 | 3..468 | 2330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 2189663..2190394 | 1571..840 | 3615 | 99.6 | Minus |
chr2L | 23010047 | chr2L | 2190456..2190830 | 841..467 | 1875 | 100 | Minus |
chr2L | 23010047 | chr2L | 2191600..2191840 | 468..228 | 1205 | 100 | Minus |
chr2L | 23010047 | chr2L | 2191897..2192121 | 227..3 | 1125 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2189913..2190644 | 1571..840 | 3660 | 100 | Minus |
2L | 23513712 | 2L | 2190706..2191080 | 841..467 | 1875 | 100 | Minus |
2L | 23513712 | 2L | 2191850..2192090 | 468..228 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 2192147..2192371 | 227..3 | 1125 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 2189913..2190644 | 1571..840 | 3660 | 100 | Minus |
2L | 23513712 | 2L | 2190706..2191080 | 841..467 | 1875 | 100 | Minus |
2L | 23513712 | 2L | 2191850..2192090 | 468..228 | 1205 | 100 | Minus |
2L | 23513712 | 2L | 2192147..2192371 | 227..3 | 1125 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2474 | 488..643 | 201 | 62.7 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2492..2681 | 457..643 | 176 | 57.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1058..1180 | 500..626 | 128 | 59.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 2191897..2192122 | 1..227 | 99 | Minus | |
chr2L | 2189663..2190393 | 841..1571 | 99 | <- | Minus |
chr2L | 2190457..2190828 | 469..840 | 100 | <- | Minus |
chr2L | 2191600..2191840 | 228..468 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..951 | 111..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..951 | 111..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..951 | 111..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..951 | 111..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..951 | 111..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..1570 | 3..1571 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..1570 | 3..1571 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 14..1584 | 1..1571 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 1..1570 | 3..1571 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG10874-RA | 14..1583 | 1..1570 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2189913..2190643 | 841..1571 | 100 | <- | Minus |
2L | 2190707..2191078 | 469..840 | 100 | <- | Minus |
2L | 2191850..2192090 | 228..468 | 100 | <- | Minus |
2L | 2192147..2192372 | 1..227 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2189913..2190643 | 841..1571 | 100 | <- | Minus |
2L | 2190707..2191078 | 469..840 | 100 | <- | Minus |
2L | 2191850..2192090 | 228..468 | 100 | <- | Minus |
2L | 2192147..2192372 | 1..227 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2189913..2190643 | 841..1571 | 100 | <- | Minus |
2L | 2190707..2191078 | 469..840 | 100 | <- | Minus |
2L | 2191850..2192090 | 228..468 | 100 | <- | Minus |
2L | 2192147..2192372 | 1..227 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 2191850..2192090 | 228..468 | 100 | <- | Minus |
arm_2L | 2192147..2192372 | 1..227 | 99 | Minus | |
arm_2L | 2189913..2190643 | 841..1571 | 100 | <- | Minus |
arm_2L | 2190707..2191078 | 469..840 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 2189913..2190643 | 841..1571 | 100 | <- | Minus |
2L | 2190707..2191078 | 469..840 | 100 | <- | Minus |
2L | 2191850..2192090 | 228..468 | 100 | <- | Minus |
2L | 2192147..2192372 | 1..227 | 99 | Minus |
Translation from 110 to 1060
> RE23541.hyp MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE QLSISIEQLQTSHTGL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10874-PA | 316 | CG10874-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
CG10874-PD | 317 | CG10874-PD | 1..317 | 1..316 | 1622 | 99.7 | Plus |
CG10874-PB | 218 | CG10874-PB | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PC | 219 | CG10874-PC | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PB | 218 | CG10874-PB | 66..218 | 163..316 | 514 | 70.7 | Plus |
CG10874-PC | 219 | CG10874-PC | 66..219 | 163..316 | 502 | 70.3 | Plus |
Translation from 110 to 1060
> RE23541.pep MEPNDEVVERQKLVNDVETEEEAQSAPKSATPASPAVPNIKIKGISSGET TRSRNSASCSIERTISEKEKDKSQGQGQAATKVTYVNERRPRPQAHGGSG GGAGDERFEFKTRPRKLLKDRDELEPTTNSANSLNAITLVSSEWLAPDPT ATDNHNTPKNNNNDSTKPNNNNQHSNSNQNTPRLQRRKNPTASMPNASAH SDKFDDRPIKHHSFVSEVPDVKHMERALLGLLDDFHSGKLRAFGSGCTMD QMTKIREQQESLAKLHFELAAAEEDSLEHGNEFNTNKAQENMLQLMQRLE QLSISIEQLQTSHTGL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15303-PA | 285 | GF15303-PA | 1..285 | 1..316 | 1025 | 75.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24552-PA | 326 | GG24552-PA | 1..326 | 1..316 | 1413 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11474-PA | 313 | GH11474-PA | 1..313 | 1..316 | 1074 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG10874-PA | 316 | CG10874-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
CG10874-PD | 317 | CG10874-PD | 1..317 | 1..316 | 1622 | 99.7 | Plus |
CG10874-PB | 218 | CG10874-PB | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PC | 219 | CG10874-PC | 1..122 | 1..122 | 605 | 98.4 | Plus |
CG10874-PB | 218 | CG10874-PB | 66..218 | 163..316 | 514 | 70.7 | Plus |
CG10874-PC | 219 | CG10874-PC | 66..219 | 163..316 | 502 | 70.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16960-PA | 305 | GI16960-PA | 1..305 | 1..316 | 1079 | 75.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19419-PA | 337 | GL19419-PA | 1..337 | 1..316 | 1230 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10612-PA | 337 | GA10612-PA | 1..337 | 1..316 | 1230 | 81.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18261-PA | 316 | GM18261-PA | 1..316 | 1..316 | 1651 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22870-PA | 316 | GD22870-PA | 1..316 | 1..316 | 1641 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17216-PA | 303 | GJ17216-PA | 1..303 | 1..316 | 1094 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15138-PA | 328 | GK15138-PA | 1..328 | 1..316 | 1207 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15219-PA | 319 | GE15219-PA | 1..319 | 1..316 | 1609 | 96.2 | Plus |