BDGP Sequence Production Resources |
Search the DGRC for RE23556
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 235 |
Well: | 56 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5160-RA |
Protein status: | RE23556.pep: gold |
Preliminary Size: | 1078 |
Sequenced Size: | 1282 |
Gene | Date | Evidence |
---|---|---|
CG5160 | 2001-12-14 | Blastp of sequenced clone |
CG5160 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5160 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5160 | 2008-04-29 | Release 5.5 accounting |
CG5160 | 2008-08-15 | Release 5.9 accounting |
CG5160 | 2008-12-18 | 5.12 accounting |
1282 bp (1282 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071187
> RE23556.complete GATAGCAAACAGGAAGCTGAAGTGTCAACAACTCGCCAAAAAAATAAATC AAAAAATATTAAATTTAAAGCAGCGCGACTCGTGAAACTATTGTAATTCG AATACAAAATGAAAATCTAGCAAAACAATACAGTTTTGCGGAAAACATAA ACTTGTTTCGCCCAACGACAATTGCCCCTGTTATCTGCCATGAATGCCAC CTCGCCAAAGTCATCGCTGGTCAAGTTGGGTCTGCATACCAATAAACAAA AGACTCTGAAGGTTATGGTCCTGGGCCAAAGTGGTGTGGGAAAAACGGCC ATGGTGGTGCGTTTTATTACCCGACGCTTCATTGGCGAGTATGATCCTAA TCTGGAGAAGATTTACACCTGCCAAACCACGCTGGACAAGGAGCAGATTC AGTTTGACATTCTGGACGCCACCGGTCAGCTACAAGAACTAGATGGAGTT AGTCTGGAGTCCAACATCCGCTGGGCCGACGCATTTATACTAATGTACTC CATTACGGACAAGTGTTCCTTCGACGAGTGCAGTCGCCTAAAGTTCCTCA TCAATTACAATAAACGAAGACGCAAGTTGGGCTCGGCCAGTAAAGAATAC GCACTGGATATTCCTGTCATACTGGTGGGCAATAAGACAGATCAGCCGGG CGATCGAATGGTCAGCTTGGAAGAGGGTCAGCGCCGATTCAGGGAGTTAT CCTGCTCCTGTTTTCACGAGATTTCCGTCAGAGAGAGCGTGGATCAAGTG CAGAATGTTTTTCGCGATGTGTTTCGCTTCTGGCGAGTCTTCAGCAAATT CCCCAAGCTCAAGCGCTCCACCAGCGATGTGGCCAATACGGATGGAATCC TCACGCCCGATTCGGGATCCTGTTCCTTCTACGATGCCTCGTCTTTGGGC GTCGGTCGACATTCCTTTCTGGTCATCGGAAGCGCCTGTTTGGAGGAGAG CAACGGTGACCATACGGAGTCTACGGATGAGATTACGAGTAGCAGTTTGA GCAGCTCACGCAGCGACATCGATGCTCCCTTCCGTAGTAGAGCTTCGACG GACGGCACCCTGTTGTCCCGACCACGTAGATGGCGGTATCCACCGCCGGG ATGCCTGCTGCCACACACGAATCGCGTGGAGCGACGGATGAGCATTTCCA CCAGGGGCAGTAATGCCAGTTACTAGAGTGGAATTTTATGCAGGGTGGGT CGAGCTTAGTTAGTCAAAATATGTAGCGACAAATATATAATTATATAGCT AGATGTTATTGTCATAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 7390020..7390537 | 1265..748 | 2590 | 100 | Minus |
chr2L | 23010047 | chr2L | 7390893..7391052 | 595..436 | 785 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 7390677..7390831 | 749..595 | 760 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 7391108..7391246 | 436..298 | 695 | 100 | Minus |
chr2L | 23010047 | chr2L | 7397278..7397438 | 167..2 | 690 | 95.8 | Minus |
chr2L | 23010047 | chr2L | 7391307..7391438 | 298..167 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7390980..7391503 | 1271..748 | 2605 | 99.8 | Minus |
2L | 23513712 | 2L | 7398238..7398403 | 167..2 | 830 | 100 | Minus |
2L | 23513712 | 2L | 7391860..7392019 | 595..436 | 800 | 100 | Minus |
2L | 23513712 | 2L | 7391644..7391798 | 749..595 | 775 | 100 | Minus |
2L | 23513712 | 2L | 7392075..7392213 | 436..298 | 695 | 100 | Minus |
2L | 23513712 | 2L | 7392274..7392405 | 298..167 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 7390980..7391503 | 1271..748 | 2605 | 99.8 | Minus |
2L | 23513712 | 2L | 7398238..7398403 | 167..2 | 830 | 100 | Minus |
2L | 23513712 | 2L | 7391860..7392019 | 595..436 | 800 | 100 | Minus |
2L | 23513712 | 2L | 7391644..7391798 | 749..595 | 775 | 100 | Minus |
2L | 23513712 | 2L | 7392075..7392213 | 436..298 | 695 | 100 | Minus |
2L | 23513712 | 2L | 7392274..7392405 | 298..167 | 660 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 7390018..7390537 | 748..1267 | 99 | <- | Minus |
chr2L | 7390679..7390831 | 595..747 | 99 | <- | Minus |
chr2L | 7390894..7391052 | 436..594 | 99 | <- | Minus |
chr2L | 7391109..7391245 | 299..435 | 100 | <- | Minus |
chr2L | 7391307..7391437 | 168..298 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..987 | 190..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RB | 1..987 | 190..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..987 | 190..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..987 | 190..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..987 | 190..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..1265 | 2..1267 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..1265 | 2..1267 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 347..1612 | 1..1267 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 1..1265 | 2..1267 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5160-RA | 347..1612 | 1..1267 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7390984..7391503 | 748..1267 | 99 | <- | Minus |
2L | 7391646..7391798 | 595..747 | 100 | <- | Minus |
2L | 7391861..7392019 | 436..594 | 100 | <- | Minus |
2L | 7392076..7392212 | 299..435 | 100 | <- | Minus |
2L | 7392274..7392404 | 168..298 | 100 | <- | Minus |
2L | 7398238..7398403 | 1..167 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7390984..7391503 | 748..1267 | 99 | <- | Minus |
2L | 7391646..7391798 | 595..747 | 100 | <- | Minus |
2L | 7391861..7392019 | 436..594 | 100 | <- | Minus |
2L | 7392076..7392212 | 299..435 | 100 | <- | Minus |
2L | 7392274..7392404 | 168..298 | 100 | <- | Minus |
2L | 7398238..7398403 | 1..167 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7390984..7391503 | 748..1267 | 99 | <- | Minus |
2L | 7391646..7391798 | 595..747 | 100 | <- | Minus |
2L | 7391861..7392019 | 436..594 | 100 | <- | Minus |
2L | 7392076..7392212 | 299..435 | 100 | <- | Minus |
2L | 7392274..7392404 | 168..298 | 100 | <- | Minus |
2L | 7398238..7398403 | 1..167 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 7392274..7392404 | 168..298 | 100 | <- | Minus |
arm_2L | 7398238..7398403 | 1..167 | 99 | Minus | |
arm_2L | 7390984..7391503 | 748..1267 | 99 | <- | Minus |
arm_2L | 7391646..7391798 | 595..747 | 100 | <- | Minus |
arm_2L | 7391861..7392019 | 436..594 | 100 | <- | Minus |
arm_2L | 7392076..7392212 | 299..435 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 7392076..7392212 | 299..435 | 100 | <- | Minus |
2L | 7392274..7392404 | 168..298 | 100 | <- | Minus |
2L | 7398238..7398403 | 1..167 | 99 | Minus | |
2L | 7390984..7391503 | 748..1267 | 99 | <- | Minus |
2L | 7391646..7391798 | 595..747 | 100 | <- | Minus |
2L | 7391861..7392019 | 436..594 | 100 | <- | Minus |
Translation from 189 to 1175
> RE23556.pep MNATSPKSSLVKLGLHTNKQKTLKVMVLGQSGVGKTAMVVRFITRRFIGE YDPNLEKIYTCQTTLDKEQIQFDILDATGQLQELDGVSLESNIRWADAFI LMYSITDKCSFDECSRLKFLINYNKRRRKLGSASKEYALDIPVILVGNKT DQPGDRMVSLEEGQRRFRELSCSCFHEISVRESVDQVQNVFRDVFRFWRV FSKFPKLKRSTSDVANTDGILTPDSGSCSFYDASSLGVGRHSFLVIGSAC LEESNGDHTESTDEITSSSLSSSRSDIDAPFRSRASTDGTLLSRPRRWRY PPPGCLLPHTNRVERRMSISTRGSNASY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14027-PA | 329 | GF14027-PA | 1..329 | 1..328 | 1674 | 95.7 | Plus |
Dana\GF23546-PA | 206 | GF23546-PA | 15..168 | 23..194 | 271 | 37.8 | Plus |
Dana\GF13570-PA | 257 | GF13570-PA | 51..205 | 21..187 | 239 | 32.7 | Plus |
Dana\GF24954-PA | 184 | GF24954-PA | 5..162 | 24..196 | 209 | 32.9 | Plus |
Dana\GF10554-PA | 192 | GF10554-PA | 2..170 | 19..202 | 198 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23535-PA | 328 | GG23535-PA | 1..328 | 1..328 | 1733 | 99.1 | Plus |
Dere\GG14386-PA | 207 | GG14386-PA | 16..169 | 23..194 | 270 | 37.8 | Plus |
Dere\GG22302-PA | 264 | GG22302-PA | 58..212 | 21..187 | 240 | 32.7 | Plus |
Dere\GG14553-PA | 184 | GG14553-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dere\GG18572-PA | 235 | GG18572-PA | 13..185 | 24..219 | 193 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13149-PA | 329 | GH13149-PA | 1..329 | 1..328 | 1456 | 89.7 | Plus |
Dgri\GH15851-PA | 207 | GH15851-PA | 16..169 | 23..194 | 267 | 37.2 | Plus |
Dgri\GH19819-PA | 265 | GH19819-PA | 61..215 | 21..187 | 241 | 33.3 | Plus |
Dgri\GH15039-PA | 184 | GH15039-PA | 5..162 | 24..196 | 211 | 32.9 | Plus |
Dgri\GH15920-PA | 192 | GH15920-PA | 2..170 | 19..202 | 200 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5160-PB | 328 | CG5160-PB | 1..328 | 1..328 | 1694 | 100 | Plus |
CG5160-PA | 328 | CG5160-PA | 1..328 | 1..328 | 1694 | 100 | Plus |
CG8519-PA | 207 | CG8519-PA | 16..169 | 23..194 | 264 | 36.6 | Plus |
Ric-PB | 264 | CG8418-PB | 58..211 | 21..186 | 237 | 32.3 | Plus |
Ric-PA | 264 | CG8418-PA | 58..211 | 21..186 | 237 | 32.3 | Plus |
Ras64B-PA | 192 | CG1167-PA | 2..169 | 19..201 | 227 | 33.3 | Plus |
Rap1-PC | 184 | CG1956-PC | 5..173 | 24..209 | 214 | 31.7 | Plus |
Rap1-PB | 184 | CG1956-PB | 5..173 | 24..209 | 214 | 31.7 | Plus |
Rap1-PA | 184 | CG1956-PA | 5..173 | 24..209 | 214 | 31.7 | Plus |
Rap2l-PA | 182 | CG3204-PA | 2..162 | 21..196 | 194 | 33.5 | Plus |
Rala-PB | 197 | CG2849-PB | 13..172 | 24..194 | 190 | 32.2 | Plus |
Rala-PC | 201 | CG2849-PC | 13..185 | 24..219 | 190 | 31.8 | Plus |
Rala-PA | 201 | CG2849-PA | 13..185 | 24..219 | 190 | 31.8 | Plus |
Ras85D-PA | 189 | CG9375-PA | 5..119 | 24..151 | 179 | 31.2 | Plus |
Rheb-PB | 182 | CG1081-PB | 4..162 | 21..194 | 164 | 28.2 | Plus |
Rheb-PA | 182 | CG1081-PA | 4..162 | 21..194 | 164 | 28.2 | Plus |
CG8500-PB | 233 | CG8500-PB | 20..216 | 24..226 | 163 | 30 | Plus |
CG8500-PA | 233 | CG8500-PA | 20..216 | 24..226 | 163 | 30 | Plus |
RhoL-PA | 190 | CG9366-PA | 6..173 | 17..196 | 158 | 24.9 | Plus |
RhoL-PB | 214 | CG9366-PB | 30..197 | 17..196 | 158 | 24.9 | Plus |
CG8641-PB | 434 | CG8641-PB | 168..338 | 24..195 | 156 | 29.9 | Plus |
CG8641-PA | 434 | CG8641-PA | 168..338 | 24..195 | 156 | 29.9 | Plus |
CG8519-PB | 151 | CG8519-PB | 2..113 | 65..194 | 155 | 33.1 | Plus |
Rab23-PA | 268 | CG2108-PA | 38..191 | 23..192 | 150 | 29.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17789-PA | 329 | GI17789-PA | 1..329 | 1..328 | 1531 | 91.2 | Plus |
Dmoj\GI12632-PA | 207 | GI12632-PA | 16..169 | 23..194 | 266 | 37.2 | Plus |
Dmoj\GI20407-PA | 267 | GI20407-PA | 61..215 | 21..187 | 240 | 32.7 | Plus |
Dmoj\GI16691-PA | 184 | GI16691-PA | 5..162 | 24..196 | 206 | 32.4 | Plus |
Dmoj\GI16572-PA | 192 | GI16572-PA | 2..170 | 19..202 | 198 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25936-PA | 330 | GL25936-PA | 1..330 | 1..328 | 1675 | 96.1 | Plus |
Dper\GL13274-PA | 207 | GL13274-PA | 16..169 | 23..194 | 265 | 36.6 | Plus |
Dper\GL19979-PA | 262 | GL19979-PA | 58..212 | 21..187 | 236 | 32.1 | Plus |
Dper\GL23727-PA | 200 | GL23727-PA | 13..170 | 24..196 | 212 | 33.5 | Plus |
Dper\GL12826-PA | 174 | GL12826-PA | 11..160 | 35..199 | 189 | 32.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18698-PA | 330 | GA18698-PA | 1..330 | 1..328 | 1675 | 96.1 | Plus |
Dpse\GA21132-PA | 207 | GA21132-PA | 16..169 | 23..194 | 265 | 36.6 | Plus |
Dpse\GA21063-PA | 262 | GA21063-PA | 58..212 | 21..187 | 236 | 32.1 | Plus |
Dpse\GA15150-PA | 184 | GA15150-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dpse\GA26719-PA | 200 | GA26719-PA | 13..170 | 24..196 | 207 | 32.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13567-PA | 328 | GM13567-PA | 1..328 | 1..328 | 1739 | 99.1 | Plus |
Dsec\GM20091-PA | 264 | GM20091-PA | 58..212 | 21..187 | 240 | 32.7 | Plus |
Dsec\GM14794-PA | 196 | GM14794-PA | 11..158 | 29..194 | 226 | 34.3 | Plus |
Dsec\GM14161-PA | 184 | GM14161-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dsec\GM12716-PA | 235 | GM12716-PA | 13..185 | 24..219 | 193 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22497-PA | 328 | GD22497-PA | 1..328 | 1..328 | 1741 | 99.4 | Plus |
Dsim\GD25569-PA | 264 | GD25569-PA | 58..212 | 21..187 | 240 | 32.7 | Plus |
Dsim\GD13966-PA | 196 | GD13966-PA | 11..158 | 29..194 | 226 | 34.3 | Plus |
Dsim\R-PA | 184 | GD13432-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dsim\GD16321-PA | 235 | GD16321-PA | 13..185 | 24..219 | 193 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17614-PA | 330 | GJ17614-PA | 1..330 | 1..328 | 1499 | 92.4 | Plus |
Dvir\GJ12755-PA | 207 | GJ12755-PA | 16..169 | 23..194 | 275 | 38.4 | Plus |
Dvir\GJ20079-PA | 267 | GJ20079-PA | 61..215 | 21..187 | 241 | 33.3 | Plus |
Dvir\GJ12943-PA | 184 | GJ12943-PA | 5..162 | 24..196 | 206 | 32.4 | Plus |
Dvir\GJ12824-PA | 192 | GJ12824-PA | 2..170 | 19..202 | 199 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24726-PA | 329 | GK24726-PA | 1..329 | 1..328 | 1524 | 91.5 | Plus |
Dwil\GK12552-PA | 204 | GK12552-PA | 27..166 | 37..194 | 228 | 36.1 | Plus |
Dwil\GK20561-PA | 184 | GK20561-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dwil\GK12838-PA | 192 | GK12838-PA | 2..170 | 19..202 | 198 | 33.9 | Plus |
Dwil\GK24932-PA | 235 | GK24932-PA | 13..185 | 24..219 | 196 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18361-PA | 328 | GE18361-PA | 1..328 | 1..328 | 1732 | 98.8 | Plus |
Dyak\GE21573-PA | 207 | GE21573-PA | 16..169 | 23..194 | 270 | 37.8 | Plus |
Dyak\GE14098-PA | 264 | GE14098-PA | 58..212 | 21..187 | 240 | 32.7 | Plus |
Dyak\GE20907-PA | 184 | GE20907-PA | 5..162 | 24..196 | 210 | 32.9 | Plus |
Dyak\GE16885-PA | 235 | GE16885-PA | 13..185 | 24..219 | 193 | 33.2 | Plus |
Translation from 189 to 1175
> RE23556.hyp MNATSPKSSLVKLGLHTNKQKTLKVMVLGQSGVGKTAMVVRFITRRFIGE YDPNLEKIYTCQTTLDKEQIQFDILDATGQLQELDGVSLESNIRWADAFI LMYSITDKCSFDECSRLKFLINYNKRRRKLGSASKEYALDIPVILVGNKT DQPGDRMVSLEEGQRRFRELSCSCFHEISVRESVDQVQNVFRDVFRFWRV FSKFPKLKRSTSDVANTDGILTPDSGSCSFYDASSLGVGRHSFLVIGSAC LEESNGDHTESTDEITSSSLSSSRSDIDAPFRSRASTDGTLLSRPRRWRY PPPGCLLPHTNRVERRMSISTRGSNASY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5160-PB | 328 | CG5160-PB | 1..328 | 1..328 | 1694 | 100 | Plus |
CG5160-PA | 328 | CG5160-PA | 1..328 | 1..328 | 1694 | 100 | Plus |
CG8519-PA | 207 | CG8519-PA | 16..169 | 23..194 | 264 | 36.6 | Plus |
Ric-PB | 264 | CG8418-PB | 58..211 | 21..186 | 237 | 32.3 | Plus |
Ric-PA | 264 | CG8418-PA | 58..211 | 21..186 | 237 | 32.3 | Plus |