BDGP Sequence Production Resources |
Search the DGRC for RE23580
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 235 |
Well: | 80 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14898-RA |
Protein status: | RE23580.pep: gold |
Preliminary Size: | 348 |
Sequenced Size: | 456 |
Gene | Date | Evidence |
---|---|---|
CG14898 | 2001-12-14 | Blastp of sequenced clone |
CG14898 | 2002-01-01 | Sim4 clustering to Release 2 |
CG14898 | 2003-01-01 | Sim4 clustering to Release 3 |
CG14898 | 2008-04-29 | Release 5.5 accounting |
CG14898 | 2008-08-15 | Release 5.9 accounting |
CG14898 | 2008-12-18 | 5.12 accounting |
456 bp (456 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071188
> RE23580.complete TGAGTTTTTAGCCGGCTGCTAAATAGTATAGTATTAGTATGTTATATGAT ATGAACTCAGGATGTCCAGAATTTTGATGAGCCAACTGACCCACCCTCAG AGGGTCCGACTGCTGTACAAAACGATCTTGCGACTGCACAGAGGACTTCC AGCGGAACTTCGTGCTCTGGGCGATAACTATGTGCGGGACGAGTTCCGGC GACACCTCAAGTGCAATCCCATGGAGGCACAGCTCTTTATGACAGAGTGG GCCCGATATGCGTCCACAATCACCCAACAACTAGGGATTCGGGGCAAGCC CAAGGGAGAGCTGGGCGAAGAGATTGACCCCAAGACTGTAGAAATGTTGA AAGACGACCAAGTAGTCCAACTATACGAGCTGATGCTGGCGGCCAAGGGA GTAGAAGATGCGCAAGGCAAATAAATCAGTGTATTATTTTAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 12306538..12306724 | 440..254 | 935 | 100 | Minus |
chr3R | 27901430 | chr3R | 12306956..12307097 | 144..3 | 710 | 100 | Minus |
chr3R | 27901430 | chr3R | 12306781..12306892 | 253..142 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 16481860..16482047 | 441..254 | 940 | 100 | Minus |
3R | 32079331 | 3R | 16482279..16482420 | 144..3 | 710 | 100 | Minus |
3R | 32079331 | 3R | 16482104..16482215 | 253..142 | 560 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 16222691..16222878 | 441..254 | 940 | 100 | Minus |
3R | 31820162 | 3R | 16223110..16223251 | 144..3 | 710 | 100 | Minus |
3R | 31820162 | 3R | 16222935..16223046 | 253..142 | 560 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 12306538..12306724 | 254..440 | 100 | <- | Minus |
chr3R | 12306781..12306890 | 144..253 | 100 | <- | Minus |
chr3R | 12306957..12307098 | 1..143 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 1..363 | 62..424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 1..363 | 62..424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 1..363 | 62..424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 1..363 | 62..424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 1..363 | 62..424 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 2..439 | 3..440 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 2..439 | 3..440 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 31..470 | 1..440 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 2..439 | 3..440 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14898-RA | 31..470 | 1..440 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16481861..16482047 | 254..440 | 100 | <- | Minus |
3R | 16482104..16482213 | 144..253 | 100 | <- | Minus |
3R | 16482280..16482421 | 1..143 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16481861..16482047 | 254..440 | 100 | <- | Minus |
3R | 16482104..16482213 | 144..253 | 100 | <- | Minus |
3R | 16482280..16482421 | 1..143 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16481861..16482047 | 254..440 | 100 | <- | Minus |
3R | 16482104..16482213 | 144..253 | 100 | <- | Minus |
3R | 16482280..16482421 | 1..143 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 12308002..12308143 | 1..143 | 99 | Minus | |
arm_3R | 12307583..12307769 | 254..440 | 100 | <- | Minus |
arm_3R | 12307826..12307935 | 144..253 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 16222692..16222878 | 254..440 | 100 | <- | Minus |
3R | 16222935..16223044 | 144..253 | 100 | <- | Minus |
3R | 16223111..16223252 | 1..143 | 99 | Minus |
Translation from 61 to 423
> RE23580.pep MSRILMSQLTHPQRVRLLYKTILRLHRGLPAELRALGDNYVRDEFRRHLK CNPMEAQLFMTEWARYASTITQQLGIRGKPKGELGEEIDPKTVEMLKDDQ VVQLYELMLAAKGVEDAQGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16511-PA | 127 | GF16511-PA | 1..115 | 1..115 | 563 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19917-PA | 120 | GG19917-PA | 1..120 | 1..120 | 620 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18290-PA | 129 | GH18290-PA | 1..115 | 1..115 | 565 | 88.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sdhaf3-PA | 120 | CG14898-PA | 1..120 | 1..120 | 616 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24099-PA | 129 | GI24099-PA | 1..114 | 1..114 | 536 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21649-PA | 131 | GL21649-PA | 1..115 | 1..115 | 554 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26360-PA | 131 | GA26360-PA | 1..115 | 1..115 | 546 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15427-PA | 120 | GM15427-PA | 1..120 | 1..120 | 619 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20284-PA | 120 | GD20284-PA | 1..120 | 1..120 | 633 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10918-PA | 129 | GJ10918-PA | 1..115 | 1..115 | 547 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18007-PA | 124 | GK18007-PA | 3..124 | 6..120 | 531 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26309-PA | 120 | GE26309-PA | 1..120 | 1..120 | 620 | 97.5 | Plus |
Translation from 61 to 423
> RE23580.hyp MSRILMSQLTHPQRVRLLYKTILRLHRGLPAELRALGDNYVRDEFRRHLK CNPMEAQLFMTEWARYASTITQQLGIRGKPKGELGEEIDPKTVEMLKDDQ VVQLYELMLAAKGVEDAQGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14898-PA | 120 | CG14898-PA | 1..120 | 1..120 | 616 | 100 | Plus |