Clone RE23632 Report

Search the DGRC for RE23632

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:236
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG12746-RB
Protein status:RE23632.pep: gold
Preliminary Size:1228
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12746 2002-10-01 Blastp of sequenced clone
CG12746 2003-01-01 Sim4 clustering to Release 3
CG12746 2008-04-29 Release 5.5 accounting
CG12746 2008-08-15 Release 5.9 accounting
CG12746 2008-12-18 5.12 accounting

Clone Sequence Records

RE23632.complete Sequence

1353 bp (1353 high quality bases) assembled on 2002-10-01

GenBank Submission: BT001579

> RE23632.complete
AGCCCTATTCTGATTTGCAAACTAACAACCGACTGATTTGAATCAAAACG
AAAAGAAACGGCTGAAAAAAGTTTGGTTTTGTCGCGTGCATACGAGTTTT
ACGCAATGAATTGCGACAAGCACCAGGCCTAAGCTGACAACCGAATATAC
CCAACGGACTAACGAAATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGC
GAACCCTCAGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGG
ACCAGGACCAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACAC
GGACAGCAGCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAA
CAGGAAACTCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGC
GTTCTCCTCGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAA
ACGGGAAATCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGAC
CGGACATTGTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCC
TTTCTGGTCACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTT
TAGAGCCGCCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCC
CAACGAGCGTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTT
TACCGCTGCTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGG
CGTGGACACCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACA
TAAACGAAGGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTT
GCGAGTTTCGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTT
TGATAGCCGGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATAC
CTCTGTTTATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCAC
CACCACTGGCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGG
CTATATAAGCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCCG
GCATACCACTGGTCAGGTGGCCCAGCAGAGAGGGAAGCCAGTACCAGCGA
CTGTCTGGAAAGGACGACAATGGCAGTCGTGGTCCCCACCATCTCGATGG
TGGGGATGCGGTGCGGAGACCTCTGCTCGCTGACAAGGAGGAGTCCAAAT
GGTACTAAAAGCTTTACGTAATATTATTGTGAGTGTTGCTTTCCCGTTTA
AGGTTTTTAAACATATTAGACAATTTCTGATTTAAAGAAAAAAAAAAAAA
AAA

RE23632.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-RB 1403 CG12746-RB 17..1352 1..1336 6680 100 Plus
CG12746-RD 1455 CG12746-RD 171..1394 113..1336 6120 100 Plus
CG12746.b 1273 CG12746.b 29..1252 113..1336 6120 100 Plus
CG12746-RD 1455 CG12746-RD 17..129 1..113 565 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1392604..1393097 843..1336 2470 100 Plus
chr3R 27901430 chr3R 1392126..1392544 424..842 2095 100 Plus
chr3R 27901430 chr3R 1391747..1392057 113..423 1555 100 Plus
chr3R 27901430 chr3R 1390530..1390642 1..113 565 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5566945..5567438 843..1336 2470 100 Plus
3R 32079331 3R 5566467..5566885 424..842 2095 100 Plus
3R 32079331 3R 5566088..5566398 113..423 1555 100 Plus
3R 32079331 3R 5564871..5564983 1..113 565 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5307776..5308269 843..1336 2470 100 Plus
3R 31820162 3R 5307298..5307716 424..842 2095 100 Plus
3R 31820162 3R 5306919..5307229 113..423 1555 100 Plus
3R 31820162 3R 5305702..5305814 1..113 565 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:01:31 has no hits.

RE23632.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:02:36 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1390530..1390641 1..112 100 -> Plus
chr3R 1391747..1392057 113..423 100 -> Plus
chr3R 1392126..1392544 424..842 100 -> Plus
chr3R 1392604..1393097 843..1337 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:23 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..1092 167..1258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:13:05 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..1092 167..1258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:48:41 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 1..1092 167..1258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:04:09 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RE 1..1092 167..1258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:25 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 1..1092 167..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:35:35 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 1..1334 1..1334 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:13:04 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 1..1333 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:48:41 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 7..1339 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:04:10 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 1..1334 1..1334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:25 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
CG12746-RB 7..1339 1..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:36 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5564871..5564982 1..112 100 -> Plus
3R 5566088..5566398 113..423 100 -> Plus
3R 5566467..5566885 424..842 100 -> Plus
3R 5566945..5567438 843..1337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:36 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5564871..5564982 1..112 100 -> Plus
3R 5566088..5566398 113..423 100 -> Plus
3R 5566467..5566885 424..842 100 -> Plus
3R 5566945..5567438 843..1337 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:36 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5564871..5564982 1..112 100 -> Plus
3R 5566088..5566398 113..423 100 -> Plus
3R 5566467..5566885 424..842 100 -> Plus
3R 5566945..5567438 843..1337 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:48:41 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1390593..1390704 1..112 100 -> Plus
arm_3R 1391810..1392120 113..423 100 -> Plus
arm_3R 1392189..1392607 424..842 100 -> Plus
arm_3R 1392667..1393160 843..1337 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:35:50 Download gff for RE23632.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5306919..5307229 113..423 100 -> Plus
3R 5307298..5307716 424..842 100 -> Plus
3R 5307776..5308269 843..1337 99   Plus
3R 5305702..5305813 1..112 100 -> Plus

RE23632.pep Sequence

Translation from 166 to 1257

> RE23632.pep
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWY*

RE23632.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11605-PA 356 GF11605-PA 1..356 1..363 1459 74.1 Plus
Dana\GF23463-PA 331 GF23463-PA 78..219 161..303 190 34.9 Plus
Dana\GF13080-PA 377 GF13080-PA 191..336 152..297 187 31.6 Plus
Dana\GF11822-PA 347 GF11822-PA 196..336 152..292 170 31.3 Plus
Dana\GF10980-PA 345 GF10980-PA 140..286 152..298 165 30.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12892-PA 409 GG12892-PA 50..409 1..363 1665 89.3 Plus
Dere\GG10557-PA 372 GG10557-PA 189..340 152..298 196 32.3 Plus
Dere\GG16258-PA 340 GG16258-PA 149..292 163..307 190 34.7 Plus
Dere\GG13182-PA 337 GG13182-PA 60..265 143..348 179 28.8 Plus
Dere\GG23436-PA 351 GG23436-PA 200..340 152..292 156 32 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22403-PA 342 GH22403-PA 6..342 9..363 1120 60 Plus
Dgri\GH16694-PA 345 GH16694-PA 153..298 163..309 205 35.3 Plus
Dgri\GH21309-PA 380 GH21309-PA 208..342 161..297 191 34.3 Plus
Dgri\GH20575-PA 365 GH20575-PA 216..357 151..292 166 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..363 1..363 1950 100 Plus
CG12746-PD 363 CG12746-PD 1..363 1..363 1950 100 Plus
CG12746-PB 363 CG12746-PB 1..363 1..363 1950 100 Plus
wun-PA 300 CG8804-PA 123..268 158..298 184 32.5 Plus
wun-PB 379 CG8804-PB 202..347 158..298 184 32.5 Plus
wun-PC 364 CG8804-PC 202..341 158..297 183 31.8 Plus
CG11426-PA 340 CG11426-PA 149..292 163..307 178 32.5 Plus
CG11425-PA 305 CG11425-PA 14..247 69..291 171 26.6 Plus
laza-PA 334 CG11440-PA 78..210 161..292 171 34.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24490-PA 340 GI24490-PA 34..316 36..325 1097 67.6 Plus
Dmoj\GI19743-PA 298 GI19743-PA 124..266 161..298 198 35.6 Plus
Dmoj\GI19768-PA 375 GI19768-PA 226..369 154..297 173 30.7 Plus
Dmoj\GI13921-PA 361 GI13921-PA 78..216 161..298 169 31.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21673-PA 359 GL21673-PA 1..359 1..363 1346 68.9 Plus
Dper\GL16886-PA 306 GL16886-PA 123..268 158..298 196 34.2 Plus
Dper\GL23165-PA 343 GL23165-PA 132..300 145..314 187 31.4 Plus
Dper\GL23176-PA 274 GL23176-PA 36..205 116..297 161 30 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11785-PA 359 GA11785-PA 1..359 1..363 1358 69.8 Plus
Dpse\GA21332-PB 365 GA21332-PB 203..336 158..291 195 34.3 Plus
Dpse\GA21332-PA 386 GA21332-PA 203..348 158..298 195 33.6 Plus
Dpse\GA21332-PC 306 GA21332-PC 123..268 158..298 190 33.6 Plus
Dpse\GA10999-PA 343 GA10999-PA 132..300 145..314 187 31.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10814-PA 407 GM10814-PA 50..407 1..363 1678 92 Plus
Dsec\GM20603-PA 372 GM20603-PA 189..340 152..298 192 31.6 Plus
Dsec\GM22448-PA 340 GM22448-PA 127..292 137..307 180 31.1 Plus
Dsec\GM22093-PA 337 GM22093-PA 60..216 143..298 176 30.9 Plus
Dsec\GM22449-PA 305 GM22449-PA 111..247 159..291 157 31.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19793-PA 407 GD19793-PA 50..407 1..363 1569 86 Plus
Dsim\GD10076-PA 372 GD10076-PA 189..340 152..298 198 31.6 Plus
Dsim\GD15031-PA 340 GD15031-PA 127..292 137..307 178 31.1 Plus
Dsim\GD12067-PA 343 GD12067-PA 60..216 143..298 177 30.9 Plus
Dsim\GD15032-PA 305 GD15032-PA 111..247 159..291 165 31.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24555-PA 327 GJ24555-PA 1..326 1..362 1123 58.6 Plus
Dvir\GJ18026-PA 378 GJ18026-PA 201..346 158..298 197 34.2 Plus
Dvir\GJ11638-PA 337 GJ11638-PA 145..297 163..315 183 33.8 Plus
Dvir\GJ13711-PA 340 GJ13711-PA 78..216 161..298 170 31.2 Plus
Dvir\GJ18273-PA 332 GJ18273-PA 165..306 151..292 163 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14299-PA 357 GK14299-PA 11..356 5..355 1184 63.9 Plus
Dwil\GK21745-PA 385 GK21745-PA 212..354 161..298 199 35.6 Plus
Dwil\GK16761-PA 362 GK16761-PA 166..309 163..307 173 31.8 Plus
Dwil\GK17452-PA 349 GK17452-PA 78..219 161..303 173 33.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10136-PA 404 GE10136-PA 50..404 1..363 1549 84.3 Plus
Dyak\GE22302-PA 369 GE22302-PA 186..337 152..298 197 31.6 Plus
Dyak\GE19508-PA 334 GE19508-PA 60..216 143..298 175 32.5 Plus
Dyak\GE19506-PA 340 GE19506-PA 127..284 137..298 175 30.4 Plus
Dyak\GE23019-PA 340 GE23019-PA 127..284 137..298 174 30.4 Plus

RE23632.hyp Sequence

Translation from 166 to 1257

> RE23632.hyp
MTASKEGQESRRTLSDSSAEDVRNTGSRTRTNDDEMWRNELAMNTDSSSV
QPEKREERSHRTGNSNAKLSDAVDVVLRVLLVITFFKLETMTAFKREIHE
EELWLYKNPRRPDIVRGGELLFWVIVAPFLVTIAFYWYTRDRRDFRAASW
AWTLALCMNGIPTSVLKITVGRPRPDYFYRCFPDGVMVLNTTSNGVDTSI
LDFNCTGLPGDINEGRKSFPSGHSSFAFASFGFIAYYIGAKLHAFDSRGR
GHTWRLCIAVIPLFIALLVAVSRTCDYHHHWQDVTIGGLIGLFAGYISYT
QYYPSIFCPDAGIPLVRWPSREGSQYQRLSGKDDNGSRGPHHLDGGDAVR
RPLLADKEESKWY*

RE23632.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12746-PE 363 CG12746-PE 1..363 1..363 1950 100 Plus
CG12746-PD 363 CG12746-PD 1..363 1..363 1950 100 Plus
CG12746-PB 363 CG12746-PB 1..363 1..363 1950 100 Plus
wun-PA 300 CG8804-PA 123..268 158..298 184 32.5 Plus
wun-PB 379 CG8804-PB 202..347 158..298 184 32.5 Plus