Clone RE23670 Report

Search the DGRC for RE23670

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:236
Well:70
Vector:pFlc-1
Associated Gene/TranscriptCG10914-RA
Protein status:RE23670.pep: gold
Preliminary Size:1879
Sequenced Size:2073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10914 2001-12-14 Blastp of sequenced clone
CG10914 2002-01-01 Sim4 clustering to Release 2
CG10914 2003-01-01 Sim4 clustering to Release 3
CG10914 2008-04-29 Release 5.5 accounting
CG10914 2008-08-15 Release 5.9 accounting
CG10914 2008-12-18 5.12 accounting

Clone Sequence Records

RE23670.complete Sequence

2073 bp (2073 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071190

> RE23670.complete
ACTGTGAGAATTCTTGTGGGCATTGCAAAATGTTTAAAACCACACGTTTA
TATAAAATTATAAATAAAAATGTGGTTATCACATGTTCGAGGCGGCAGAA
TACCGCCGCTGAAGTGGGACAGAGCTTTCGGCAGAGGGCGTGGCTGCTCG
CCAGAGAGCGGTACAAGGATCATGAGCACGTTCATTACAGCTCTGTTCTG
GAGACCAAAATAAAACCCTCTTTCTCGATTCCTGAGACACAACAGCATTT
GCCCGACGACTGGATGGACGACTACGAGTTCTATCAGGGCGCCCAGGAGG
GAGGGAATAAGCAGGGCACACCGGATCCTTCGTTACCCGCCTCAAAGGTT
CCATGCAACGGCTGCGGCGCAGACCTTCATTGCACGAATGCCTCCCTGCC
AGGCTATATACCAAGTGAAATATTCAGGGATAGGACGCAGCAGGAACTGC
AAACGATCACCTGCAAGCGTTGTCACTTTCTGAACCACTACAACATCGCA
TTGGATGTGGTGGTGGCCCCATCGACCTATGTGGACACCATATCCCGCAT
TCAAGACAAATTTGCACTGGCTATTGTTCTGGTGGACCTTCTCGATTTTC
CCTGCTCCATTTGGCCGGGCATGCAAAACATATTGGGCGCAAAGCGACCC
GTCTTCCTGGTGGGCAACAAGGTCGATCTGCTGCCGCGCGACTCCAACAT
CTATCTTCAGCATATTAAGGATTCTCTGCAGCGCGAGTTCATCAAGCATG
GCGGTGGAAATGGTCTAAATATCAAGAATGTCAGTTTGATATCCGCCAAA
ACGGGCTATGGCATCGAGGAGCTAATAACGCAGCTGCACAAAACGTGGGC
CTACAAAGGCGATGTCTATCTGGTGGGCTGCACCAATGTGGGCAAGAGCT
CGCTGTTCAACATTCTGCTTAACTCGGACTACTGCCGGCCGGAGGCCAGT
GACCTGGTGCGCAAGGCCACCACCTGTCCGTGGCCGGGCACCACACTCAA
ACTGCTGCGGTTTCCAATCTTGCGTCCATCGAACGATCGAGTCTATCAGC
GCTTTAAGAGATTGGTTTCGGAGCGCAGCGAGAAGGCGGAAATGGAAAAG
GAGCGTCGCGCAGTGGCAAGGGAAACGGGTTCAGCGGCAGCTGCTCAACC
AGTGGCTCCGGTTGGACGCACCTTCGATCGACGCGAAAATCTCCATGATG
CCTTTGCCATGGCCGGTGGCTCGCGACCGATTACAACGCTAAACGATCGG
GGCAAGGAGTACAAGGAAGCGCGTTGGGTCTACGACACACCGGGTGTGAT
GCAACCCGACCAAATATCTCCCCTGCTCACCGCCGAGGAGCTGGTAAAGC
TGCAGCCCGCCACCATGATCCGACCGCGCGCCTTTCGGCTGCGGCCCCAG
ATGAGCATACTACTGGGCGGTTTGGCCAGATTGGATCTGCTGGAAATAAC
AAGCCCAAGGAAACACTTTGACTGGCTGAAGGTGTTTGTATTTGCCTCAG
AGCATCTTCCCATCATGATAGCAGATACACAGGAGGCGGAAAGCGTGTAC
AAAAGATACGTGGGTTCGCCCTTTCTGGGTGTTCCCTTCGCTAGCGAGAA
CTTGGAGGCCCGCCTGCGACGCTGGCCGGGATTGCAATGCAAGGATGGGG
ATATTGTGCTGGCAAGTGAAGGAAGGAACGAGGAAACGAGGCTTAACTGT
GATATTACGCTCAGCTCTGCGGGCTGGATGGGAATCCTGCTGCCGGGCCA
CTCGGAGTGTCGTCTACGGGCCTGGACACCAAAGGCGGCAGGGATTTACA
GACGTGAACCGGCTTTAATACCTTTAGCCGATCGATTGGTTGGCAAGCAC
ATAAGGTATTCCCTGGCCTACAACACCGCCAAGCCCTTTGTTTACAAAAA
ATAAAAAACAAATTGTTTATAAATTGTAAATAAATACAATTGTTTAAATT
ACTTAATAATATATTCTACCAAACTAAAGCAATTTGCACCGCTTTAGTTA
TTTTCAGCATACCCCGATTTTTATAATAAAGTTTGTGCTATTATAAAAAA
AAAAAAGAAAAAAAAAAAAAAAA

RE23670.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10914-RA 2044 CG10914-RA 1..2044 1..2044 10220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14045422..14047466 1..2045 10105 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18158267..18160311 1..2045 10225 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18159466..18161510 1..2045 10225 100 Plus
Blast to na_te.dros performed 2019-03-15 22:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 4810..4844 1495..1530 123 86.1 Plus
roo 9092 roo DM_ROO 9092bp 1452..1547 8..103 119 62.2 Plus

RE23670.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:39:40 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14045422..14047316 1..1895 98 == Plus
chr2R 14047387..14047459 1966..2038 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:26 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..1875 30..1904 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:58 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..1875 30..1904 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:03 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..1875 30..1904 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:29:39 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..1875 30..1904 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:31:49 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..1875 30..1904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:32:41 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..2044 1..2044 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:58 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..2044 1..2044 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:03 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 11..2054 1..2044 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:29:39 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 1..2044 1..2044 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:31:49 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
CG10914-RA 11..2054 1..2044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:40 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18158267..18160310 1..2044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:40 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18158267..18160310 1..2044 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:39:40 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18158267..18160310 1..2044 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:03 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14045772..14047815 1..2044 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:05:42 Download gff for RE23670.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18159466..18161509 1..2044 100   Plus

RE23670.hyp Sequence

Translation from 2 to 1903

> RE23670.hyp
CENSCGHCKMFKTTRLYKIINKNVVITCSRRQNTAAEVGQSFRQRAWLLA
RERYKDHEHVHYSSVLETKIKPSFSIPETQQHLPDDWMDDYEFYQGAQEG
GNKQGTPDPSLPASKVPCNGCGADLHCTNASLPGYIPSEIFRDRTQQELQ
TITCKRCHFLNHYNIALDVVVAPSTYVDTISRIQDKFALAIVLVDLLDFP
CSIWPGMQNILGAKRPVFLVGNKVDLLPRDSNIYLQHIKDSLQREFIKHG
GGNGLNIKNVSLISAKTGYGIEELITQLHKTWAYKGDVYLVGCTNVGKSS
LFNILLNSDYCRPEASDLVRKATTCPWPGTTLKLLRFPILRPSNDRVYQR
FKRLVSERSEKAEMEKERRAVARETGSAAAAQPVAPVGRTFDRRENLHDA
FAMAGGSRPITTLNDRGKEYKEARWVYDTPGVMQPDQISPLLTAEELVKL
QPATMIRPRAFRLRPQMSILLGGLARLDLLEITSPRKHFDWLKVFVFASE
HLPIMIADTQEAESVYKRYVGSPFLGVPFASENLEARLRRWPGLQCKDGD
IVLASEGRNEETRLNCDITLSSAGWMGILLPGHSECRLRAWTPKAAGIYR
REPALIPLADRLVGKHIRYSLAYNTAKPFVYKK*

RE23670.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10914-PA 624 CG10914-PA 1..624 10..633 3293 100 Plus

RE23670.pep Sequence

Translation from 29 to 1903

> RE23670.pep
MFKTTRLYKIINKNVVITCSRRQNTAAEVGQSFRQRAWLLARERYKDHEH
VHYSSVLETKIKPSFSIPETQQHLPDDWMDDYEFYQGAQEGGNKQGTPDP
SLPASKVPCNGCGADLHCTNASLPGYIPSEIFRDRTQQELQTITCKRCHF
LNHYNIALDVVVAPSTYVDTISRIQDKFALAIVLVDLLDFPCSIWPGMQN
ILGAKRPVFLVGNKVDLLPRDSNIYLQHIKDSLQREFIKHGGGNGLNIKN
VSLISAKTGYGIEELITQLHKTWAYKGDVYLVGCTNVGKSSLFNILLNSD
YCRPEASDLVRKATTCPWPGTTLKLLRFPILRPSNDRVYQRFKRLVSERS
EKAEMEKERRAVARETGSAAAAQPVAPVGRTFDRRENLHDAFAMAGGSRP
ITTLNDRGKEYKEARWVYDTPGVMQPDQISPLLTAEELVKLQPATMIRPR
AFRLRPQMSILLGGLARLDLLEITSPRKHFDWLKVFVFASEHLPIMIADT
QEAESVYKRYVGSPFLGVPFASENLEARLRRWPGLQCKDGDIVLASEGRN
EETRLNCDITLSSAGWMGILLPGHSECRLRAWTPKAAGIYRREPALIPLA
DRLVGKHIRYSLAYNTAKPFVYKK*

RE23670.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12654-PA 566 GF12654-PA 5..566 62..624 2435 77.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21848-PA 623 GG21848-PA 1..623 1..624 3066 90.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21055-PA 649 GH21055-PA 1..649 1..624 2290 64.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10914-PA 624 CG10914-PA 1..624 1..624 3293 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18656-PA 547 GI18656-PA 1..547 79..624 2097 68.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11551-PA 623 GL11551-PA 1..623 1..624 2558 73.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10638-PA 623 GA10638-PA 1..623 1..624 2561 73.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21850-PA 624 GM21850-PA 1..624 1..624 3148 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11344-PA 499 GD11344-PA 14..499 144..624 2393 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21673-PA 647 GJ21673-PA 1..647 1..624 2242 65.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19491-PA 644 GK19491-PA 38..644 21..624 2200 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11927-PA 623 GE11927-PA 1..623 1..624 3065 90.4 Plus