BDGP Sequence Production Resources |
Search the DGRC for RE23826
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 238 |
Well: | 26 |
Vector: | pFlc-1 |
Associated Gene/Transcript | AdSS-RA |
Protein status: | RE23826.pep: gold |
Preliminary Size: | 1984 |
Sequenced Size: | 2000 |
Gene | Date | Evidence |
---|---|---|
CG17273 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17273 | 2002-04-22 | Blastp of sequenced clone |
CG17273 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17273 | 2008-04-29 | Release 5.5 accounting |
CG17273 | 2008-08-15 | Release 5.9 accounting |
CG17273 | 2008-12-18 | 5.12 accounting |
2000 bp (2000 high quality bases) assembled on 2002-04-22
GenBank Submission: AY113428
> RE23826.complete AGGACCGCTCGCCCGCACCGGGCCACCCTCTGTTTGTTTTATAGCCAAAT GCTGGTCGAGCGCAGCCAGCAGAGAGTAATCACAACGTGTTCGCGAACGA TTTCCGAGTGCCCGAGATCCGTGTCCGTGCTCCGATCCGATCCGATCTGT TCCGTTCCACTACGGGGAAATGTCTGCCAGCGCCACCAACGGCACGCACT ACGAGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGAC GTCGTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGA CATGCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACA ACGCTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTC CTGCCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGG CGTCGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAG CCAAGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCC CACCTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGA GAAGGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTT ACTCCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGC GACTTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGT GCGCCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCT ACAAGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGC TTCCTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAGGCGC CAACGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGA GCAGCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCG CAGACGATTGGCGAGGTGATTGGCGTGGTCAAGGCCTATACGACGCGAGT GGGCGACGGTCCATTCCCCACCGAGCAGCTAAATGATATTGGCGACTTGC TGCAGACGCGCGGCTTTGAAGTCGGTGTCACTACCAAGCGGAAGCGCCGC TGCGGCTGGCTGGACATACCGCTGCTGAAGTACACCTCGCTGGTCAACGG CTACACGTGCATCTGTCTGACCAAGCTGGATATTCTCGACACGCTGCCGG AGATCAAGGTGGCCGTGGCCTACAAGAAGCCCAATGGCGAGAAGCTTGAC CACTTCCCCGGCACCATTGCCGAGCTCGGAAACATCGAGGTGGAGTACGC CGTGCTGCCTGGCTGGCAGACATCCACTGAGGAGGTGCGCAACTTCAAGG AGCTGCCGGAGAATGCCCAGAGCTACGTCCGGTTTCTGGAGAGCGAGCTG AGTGTGCCCGTGCGCTGGGTGGGCGTTGGAAAGGGCCGTGAGTCCATCAT CAATGTGCATTAACCAGCAAAGGCAAGGGTGCCGACGACGTACTTATGCC TACCAGTTCGTGTATCTGAGACGGAAACGCTTTAGTAGAGCCCATTGGGC AGAAACGGCGCTTAAAATATCCAAACACAACTACAGACCTAACCACCCAC AAATACAACTAATATTTCGACTATCTACAACATTTGGACACAAATTATTA GCATATTGCTTCTTTAAGCTATACTTTCTAGTTTTGATGTTCACAAATTC ATTTGAAGCGGTGCCGTCCGGGGCTCGCAAGCATATATTATATACTATAA CTTCTTGTTTGATGAGGACGTACTTAGTTTTTAAGATCATCAGGTGCAGT TTCAGATTTTTTGTATGCAAAGGGAAGCAGATATTTTTTATTGTACAATA ACTAAATAATGTTGTTTTAATATTTAAATACAACAGTGTGCTCTGACTTG TGTAATTGTGTCGCAAGGTAAATACATTTTAAAGTCAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG17273-RA | 2093 | CG17273-RA | 89..2084 | 1..1996 | 9965 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16648582..16649483 | 1986..1085 | 4510 | 100 | Minus |
chr3R | 27901430 | chr3R | 16649547..16649908 | 1085..724 | 1810 | 100 | Minus |
chr3R | 27901430 | chr3R | 16654190..16654530 | 341..1 | 1705 | 100 | Minus |
chr3R | 27901430 | chr3R | 16649977..16650259 | 725..443 | 1415 | 100 | Minus |
chr3R | 27901430 | chr3R | 16651894..16652000 | 444..338 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 20824657..20825568 | 1996..1085 | 4545 | 99.9 | Minus |
3R | 32079331 | 3R | 20825632..20825993 | 1085..724 | 1810 | 100 | Minus |
3R | 32079331 | 3R | 20830275..20830615 | 341..1 | 1705 | 100 | Minus |
3R | 32079331 | 3R | 20826062..20826344 | 725..443 | 1415 | 100 | Minus |
3R | 32079331 | 3R | 20827979..20828085 | 444..338 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20565488..20566399 | 1996..1085 | 4545 | 99.8 | Minus |
3R | 31820162 | 3R | 20566463..20566824 | 1085..724 | 1810 | 100 | Minus |
3R | 31820162 | 3R | 20571106..20571446 | 341..1 | 1705 | 100 | Minus |
3R | 31820162 | 3R | 20566893..20567175 | 725..443 | 1415 | 100 | Minus |
3R | 31820162 | 3R | 20568810..20568916 | 444..338 | 535 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16649979..16650258 | 444..723 | 100 | <- | Minus |
chr3R | 16648582..16649483 | 1085..1986 | 100 | <- | Minus |
chr3R | 16649548..16649908 | 724..1084 | 100 | <- | Minus |
chr3R | 16651895..16651997 | 341..443 | 100 | <- | Minus |
chr3R | 16654191..16654530 | 1..340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1344 | 170..1513 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1344 | 170..1513 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1344 | 170..1513 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1344 | 170..1513 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AdSS-RA | 1..1344 | 170..1513 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1986 | 1..1986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1986 | 1..1986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1951 | 36..1986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17273-RA | 1..1986 | 1..1986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
AdSS-RA | 1..1951 | 36..1986 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20824667..20825568 | 1085..1986 | 100 | <- | Minus |
3R | 20825633..20825993 | 724..1084 | 100 | <- | Minus |
3R | 20826064..20826343 | 444..723 | 100 | <- | Minus |
3R | 20827980..20828082 | 341..443 | 100 | <- | Minus |
3R | 20830276..20830615 | 1..340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20824667..20825568 | 1085..1986 | 100 | <- | Minus |
3R | 20825633..20825993 | 724..1084 | 100 | <- | Minus |
3R | 20826064..20826343 | 444..723 | 100 | <- | Minus |
3R | 20827980..20828082 | 341..443 | 100 | <- | Minus |
3R | 20830276..20830615 | 1..340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20824667..20825568 | 1085..1986 | 100 | <- | Minus |
3R | 20825633..20825993 | 724..1084 | 100 | <- | Minus |
3R | 20826064..20826343 | 444..723 | 100 | <- | Minus |
3R | 20827980..20828082 | 341..443 | 100 | <- | Minus |
3R | 20830276..20830615 | 1..340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16651355..16651715 | 724..1084 | 100 | <- | Minus |
arm_3R | 16651786..16652065 | 444..723 | 100 | <- | Minus |
arm_3R | 16653702..16653804 | 341..443 | 100 | <- | Minus |
arm_3R | 16650389..16651290 | 1085..1986 | 100 | <- | Minus |
arm_3R | 16655998..16656337 | 1..340 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20565498..20566399 | 1085..1986 | 100 | <- | Minus |
3R | 20566464..20566824 | 724..1084 | 100 | <- | Minus |
3R | 20566895..20567174 | 444..723 | 100 | <- | Minus |
3R | 20568811..20568913 | 341..443 | 100 | <- | Minus |
3R | 20571107..20571446 | 1..340 | 100 | Minus |
Translation from 169 to 1512
> RE23826.pep MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17012-PA | 448 | GF17012-PA | 4..448 | 3..447 | 2318 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15093-PA | 447 | GG15093-PA | 1..447 | 1..447 | 2364 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15927-PA | 452 | GH15927-PA | 6..452 | 1..447 | 2241 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AdSS-PA | 447 | CG17273-PA | 1..447 | 1..447 | 2339 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22153-PA | 448 | GI22153-PA | 3..448 | 2..447 | 2252 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24277-PA | 448 | GL24277-PA | 3..448 | 2..447 | 2251 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14431-PA | 448 | GA14431-PA | 3..448 | 2..447 | 2253 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23154-PA | 447 | GM23154-PA | 1..447 | 1..447 | 2377 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20028-PA | 403 | GD20028-PA | 1..403 | 45..447 | 2139 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24271-PA | 448 | GJ24271-PA | 6..448 | 5..447 | 2252 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22693-PA | 449 | GK22693-PA | 4..449 | 2..447 | 2274 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25034-PA | 506 | GE25034-PA | 1..506 | 1..447 | 2172 | 84 | Plus |
Translation from 169 to 1512
> RE23826.hyp MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
AdSS-PA | 447 | CG17273-PA | 1..447 | 1..447 | 2339 | 100 | Plus |