Clone RE23826 Report

Search the DGRC for RE23826

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:238
Well:26
Vector:pFlc-1
Associated Gene/TranscriptAdSS-RA
Protein status:RE23826.pep: gold
Preliminary Size:1984
Sequenced Size:2000

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17273 2002-01-01 Sim4 clustering to Release 2
CG17273 2002-04-22 Blastp of sequenced clone
CG17273 2003-01-01 Sim4 clustering to Release 3
CG17273 2008-04-29 Release 5.5 accounting
CG17273 2008-08-15 Release 5.9 accounting
CG17273 2008-12-18 5.12 accounting

Clone Sequence Records

RE23826.complete Sequence

2000 bp (2000 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113428

> RE23826.complete
AGGACCGCTCGCCCGCACCGGGCCACCCTCTGTTTGTTTTATAGCCAAAT
GCTGGTCGAGCGCAGCCAGCAGAGAGTAATCACAACGTGTTCGCGAACGA
TTTCCGAGTGCCCGAGATCCGTGTCCGTGCTCCGATCCGATCCGATCTGT
TCCGTTCCACTACGGGGAAATGTCTGCCAGCGCCACCAACGGCACGCACT
ACGAGCAGCTGCACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGAC
GTCGTCCTGGGAGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGA
CATGCTGGCCTCCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACA
ACGCTGGACACACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTC
CTGCCCAGTGGAGTTGTGAACGAGAAATGCGTTTCCGTCATTGGCAATGG
CGTCGTCATTCACCTGCCCTCGCTATTCGACGAGGTGCTGAAGAACGAAG
CCAAGGGGCTGCAGCACCTAGAGAACCGGCTGATCATCTCGGATCGTGCC
CACCTGGTTTTCGACTTCCATCAGCATGTGGATGGCATGCAGGAGGCTGA
GAAGGGCGGCAAGTCGCTCGGCACCACCAAGAAGGGCATCGGTCCGGCTT
ACTCCAGCAAGGCTACCCGCAATGGCATCCGAGTGGGCGAGCTGCTCGGC
GACTTCAATCTATTCAGCGAAAAGTTCAAGTCGATTGTGGCCACGCACGT
GCGCCTGTTCCCATCGATTAACGTCGACGTAGAGGCCGAGCTGGCCCGCT
ACAAGGACTACGCGGATAAGGTTCGTCCCTATGTCAAGGACACCATTTGC
TTCCTGCACACTGCCCTGCGCAACGGCAAGACGATCTTGGTCGAAGGCGC
CAACGCGGCCATGCTGGACATCGACTTCGGCACGTATCCGTATGTGACGA
GCAGCAACTGCAGCATTGGCGGTGTTCTCACGGGCCTGGGTCTGCCCCCG
CAGACGATTGGCGAGGTGATTGGCGTGGTCAAGGCCTATACGACGCGAGT
GGGCGACGGTCCATTCCCCACCGAGCAGCTAAATGATATTGGCGACTTGC
TGCAGACGCGCGGCTTTGAAGTCGGTGTCACTACCAAGCGGAAGCGCCGC
TGCGGCTGGCTGGACATACCGCTGCTGAAGTACACCTCGCTGGTCAACGG
CTACACGTGCATCTGTCTGACCAAGCTGGATATTCTCGACACGCTGCCGG
AGATCAAGGTGGCCGTGGCCTACAAGAAGCCCAATGGCGAGAAGCTTGAC
CACTTCCCCGGCACCATTGCCGAGCTCGGAAACATCGAGGTGGAGTACGC
CGTGCTGCCTGGCTGGCAGACATCCACTGAGGAGGTGCGCAACTTCAAGG
AGCTGCCGGAGAATGCCCAGAGCTACGTCCGGTTTCTGGAGAGCGAGCTG
AGTGTGCCCGTGCGCTGGGTGGGCGTTGGAAAGGGCCGTGAGTCCATCAT
CAATGTGCATTAACCAGCAAAGGCAAGGGTGCCGACGACGTACTTATGCC
TACCAGTTCGTGTATCTGAGACGGAAACGCTTTAGTAGAGCCCATTGGGC
AGAAACGGCGCTTAAAATATCCAAACACAACTACAGACCTAACCACCCAC
AAATACAACTAATATTTCGACTATCTACAACATTTGGACACAAATTATTA
GCATATTGCTTCTTTAAGCTATACTTTCTAGTTTTGATGTTCACAAATTC
ATTTGAAGCGGTGCCGTCCGGGGCTCGCAAGCATATATTATATACTATAA
CTTCTTGTTTGATGAGGACGTACTTAGTTTTTAAGATCATCAGGTGCAGT
TTCAGATTTTTTGTATGCAAAGGGAAGCAGATATTTTTTATTGTACAATA
ACTAAATAATGTTGTTTTAATATTTAAATACAACAGTGTGCTCTGACTTG
TGTAATTGTGTCGCAAGGTAAATACATTTTAAAGTCAAAAAAAAAAAAAA

RE23826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17273-RA 2093 CG17273-RA 89..2084 1..1996 9965 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16648582..16649483 1986..1085 4510 100 Minus
chr3R 27901430 chr3R 16649547..16649908 1085..724 1810 100 Minus
chr3R 27901430 chr3R 16654190..16654530 341..1 1705 100 Minus
chr3R 27901430 chr3R 16649977..16650259 725..443 1415 100 Minus
chr3R 27901430 chr3R 16651894..16652000 444..338 535 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20824657..20825568 1996..1085 4545 99.9 Minus
3R 32079331 3R 20825632..20825993 1085..724 1810 100 Minus
3R 32079331 3R 20830275..20830615 341..1 1705 100 Minus
3R 32079331 3R 20826062..20826344 725..443 1415 100 Minus
3R 32079331 3R 20827979..20828085 444..338 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20565488..20566399 1996..1085 4545 99.8 Minus
3R 31820162 3R 20566463..20566824 1085..724 1810 100 Minus
3R 31820162 3R 20571106..20571446 341..1 1705 100 Minus
3R 31820162 3R 20566893..20567175 725..443 1415 100 Minus
3R 31820162 3R 20568810..20568916 444..338 535 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:47:15 has no hits.

RE23826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:48:20 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16649979..16650258 444..723 100 <- Minus
chr3R 16648582..16649483 1085..1986 100 <- Minus
chr3R 16649548..16649908 724..1084 100 <- Minus
chr3R 16651895..16651997 341..443 100 <- Minus
chr3R 16654191..16654530 1..340 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:32 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 170..1513 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:59:00 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 170..1513 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:16:11 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 170..1513 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:52:16 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1344 170..1513 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:33 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 1..1344 170..1513 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:39:34 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1986 1..1986 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:59 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1986 1..1986 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:16:11 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1951 36..1986 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:52:16 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 1..1986 1..1986 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:33 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 1..1951 36..1986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:20 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20824667..20825568 1085..1986 100 <- Minus
3R 20825633..20825993 724..1084 100 <- Minus
3R 20826064..20826343 444..723 100 <- Minus
3R 20827980..20828082 341..443 100 <- Minus
3R 20830276..20830615 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:20 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20824667..20825568 1085..1986 100 <- Minus
3R 20825633..20825993 724..1084 100 <- Minus
3R 20826064..20826343 444..723 100 <- Minus
3R 20827980..20828082 341..443 100 <- Minus
3R 20830276..20830615 1..340 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:48:20 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20824667..20825568 1085..1986 100 <- Minus
3R 20825633..20825993 724..1084 100 <- Minus
3R 20826064..20826343 444..723 100 <- Minus
3R 20827980..20828082 341..443 100 <- Minus
3R 20830276..20830615 1..340 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:16:11 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16651355..16651715 724..1084 100 <- Minus
arm_3R 16651786..16652065 444..723 100 <- Minus
arm_3R 16653702..16653804 341..443 100 <- Minus
arm_3R 16650389..16651290 1085..1986 100 <- Minus
arm_3R 16655998..16656337 1..340 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:24:22 Download gff for RE23826.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20565498..20566399 1085..1986 100 <- Minus
3R 20566464..20566824 724..1084 100 <- Minus
3R 20566895..20567174 444..723 100 <- Minus
3R 20568811..20568913 341..443 100 <- Minus
3R 20571107..20571446 1..340 100   Minus

RE23826.pep Sequence

Translation from 169 to 1512

> RE23826.pep
MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV
DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP
SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL
GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI
NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD
IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP
TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL
TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ
TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVH*

RE23826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17012-PA 448 GF17012-PA 4..448 3..447 2318 97.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15093-PA 447 GG15093-PA 1..447 1..447 2364 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15927-PA 452 GH15927-PA 6..452 1..447 2241 92.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-PA 447 CG17273-PA 1..447 1..447 2339 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22153-PA 448 GI22153-PA 3..448 2..447 2252 93.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24277-PA 448 GL24277-PA 3..448 2..447 2251 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14431-PA 448 GA14431-PA 3..448 2..447 2253 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23154-PA 447 GM23154-PA 1..447 1..447 2377 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20028-PA 403 GD20028-PA 1..403 45..447 2139 99.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24271-PA 448 GJ24271-PA 6..448 5..447 2252 94.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22693-PA 449 GK22693-PA 4..449 2..447 2274 94.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25034-PA 506 GE25034-PA 1..506 1..447 2172 84 Plus

RE23826.hyp Sequence

Translation from 169 to 1512

> RE23826.hyp
MSASATNGTHYEQLHQGRTKMYKSKVDVVLGAQWGDEGKGKVVDMLASDV
DIVCRCQGGNNAGHTVVANGTEFDFHLLPSGVVNEKCVSVIGNGVVIHLP
SLFDEVLKNEAKGLQHLENRLIISDRAHLVFDFHQHVDGMQEAEKGGKSL
GTTKKGIGPAYSSKATRNGIRVGELLGDFNLFSEKFKSIVATHVRLFPSI
NVDVEAELARYKDYADKVRPYVKDTICFLHTALRNGKTILVEGANAAMLD
IDFGTYPYVTSSNCSIGGVLTGLGLPPQTIGEVIGVVKAYTTRVGDGPFP
TEQLNDIGDLLQTRGFEVGVTTKRKRRCGWLDIPLLKYTSLVNGYTCICL
TKLDILDTLPEIKVAVAYKKPNGEKLDHFPGTIAELGNIEVEYAVLPGWQ
TSTEEVRNFKELPENAQSYVRFLESELSVPVRWVGVGKGRESIINVH*

RE23826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-PA 447 CG17273-PA 1..447 1..447 2339 100 Plus