BDGP Sequence Production Resources |
Search the DGRC for RE23851
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 238 |
Well: | 51 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11560-RA |
Protein status: | RE23851.pep: gold |
Sequenced Size: | 1162 |
Gene | Date | Evidence |
---|---|---|
CG11560 | 2008-12-18 | 5.12 accounting |
1162 bp assembled on 2008-10-23
GenBank Submission: BT050548.1
> RE23851.complete GTTCTTAATTTTTTTTACTATGACCATAAGGATTGCGAGGCGAAATATGT TTTTCATACACGCCCCCGAGGAGGAGAAGTGCATGGAGGCGCAGCTGGAC ATCCTTATGAAGATCAACTCCGGTGAATATCGGCTGGTGAAGAAGAACAA GCGCAGTTCCGTTTGGAACGTCTACCGGGAAATCGCTCGTCCGGACGGCA CCAAGTTGAAATGGCGATACTTCTGCATGGGCTGCAAGCGTGTGATGCAG AGCACCGGCGGCACCACCTCCAATCTGCGCATCCACAAGTGCCACGTACG GTATATCAAGCAGAACGGCCATCTCACCGACGGCAGTCACTCCTACGACC ATGATCCCGCGCCACCAGCTAGCCAACCGTCGCCGCGCGTCCAGAAACCG AAGACCAGGCGGCCGACATCCTATTCTACGCAGTGTGAGCAGTTCTATGA GGTCACCATGGATCCGGAGACCCAGTACAGCGATCTGGATGATGAGATTG AGGCTTCTTTGGAGGAGGAGCAGACTCTGAAATCAAAACGTGAATTGGAA TCCTCCCACTCCAGACCCCTGCTGAAGCTCTTCTCCGAGGAGAACTTGTC GACTGAACCAGAGGAGCCGGAAGACGAGATTGAGATTGTGGAGGCGGAAG ATCAGGTGCCCATCGAGCTGGACCTATGTGACATCCAACATACTACATCC GATGCTGGCGGTGAGGCAATCGAACCCAAGCCAACGGAAAGTGTCGCCCA GTTCGATGCCAATGCCATTTCCGAAGCGGAATCCTATGCCAAAGCCTGGG CTCACGCCTTCCTGCGGCTGAACGAGGACCAAAAGTTCTACGCCAAGCGC TCCATAGATGAACTACTGGTCTTGGGTCGTCTGGAGCGACTGAGCATTTC CACGGTCACATCCTTGACCACAAACCTGTAGCACCTCACCATGCCAATAC CGCATATGTAAATTAGCTTAAGAATTTATTTATATTGCAGACTCAATGAT TTGCTCACTTAACGTAGATCCCCAATAAATAAATAATAAAAATTAGAATA AATATATAAAATAATATATTCGATAGCGATTTAAGTAAACATTTATAAAC TACACTTTAGTTTAGAATTTACACAAATAAACAATACCAAAAAGCCAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 3550..3670 | 966..1087 | 147 | 63.2 | Plus |
412 | 7567 | 412 412 7567bp | 6792..6905 | 1028..1137 | 145 | 64.7 | Plus |
Dbuz\BuT5 | 669 | Dbuz\BuT5 BUT5 669bp | 263..328 | 1126..1062 | 111 | 65.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 12110816..12111341 | 1..526 | 99 | -> | Plus |
chr3L | 12111408..12112025 | 527..1146 | 92 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..912 | 20..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..912 | 20..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..912 | 20..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..912 | 20..931 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..1060 | 1..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..1060 | 1..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 45..1101 | 1..1057 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 1..1060 | 1..1060 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11560-RA | 45..1101 | 1..1057 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12120063..12120588 | 1..526 | 99 | -> | Plus |
3L | 12120655..12121272 | 527..1146 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12120063..12120588 | 1..526 | 99 | -> | Plus |
3L | 12120655..12121272 | 527..1146 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12120063..12120588 | 1..526 | 99 | -> | Plus |
3L | 12120655..12121272 | 527..1146 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 12113163..12113688 | 1..526 | 99 | -> | Plus |
arm_3L | 12113755..12114372 | 527..1146 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 12113163..12113688 | 1..526 | 99 | -> | Plus |
3L | 12113755..12114372 | 527..1146 | 99 | Plus |
Translation from 0 to 930
> RE23851.hyp FLIFFTMTIRIARRNMFFIHAPEEEKCMEAQLDILMKINSGEYRLVKKNK RSSVWNVYREIARPDGTKLKWRYFCMGCKRVMQSTGGTTSNLRIHKCHVR YIKQNGHLTDGSHSYDHDPAPPASQPSPRVQKPKTRRPTSYSTQCEQFYE VTMDPETQYSDLDDEIEASLEEEQTLKSKRELESSHSRPLLKLFSEENLS TEPEEPEDEIEIVEAEDQVPIELDLCDIQHTTSDAGGEAIEPKPTESVAQ FDANAISEAESYAKAWAHAFLRLNEDQKFYAKRSIDELLVLGRLERLSIS TVTSLTTNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11560-PA | 303 | CG11560-PA | 1..303 | 7..309 | 1581 | 100 | Plus |
ssp-PA | 368 | CG17153-PA | 14..86 | 29..103 | 210 | 54.7 | Plus |
CG34116-PA | 211 | CG34116-PA | 7..123 | 33..128 | 184 | 36.8 | Plus |
CG34116-PA | 211 | CG34116-PA | 99..207 | 201..302 | 162 | 33.9 | Plus |
Translation from 1 to 930
> RE23851.pep FLIFFTMTIRIARRNMFFIHAPEEEKCMEAQLDILMKINSGEYRLVKKNK RSSVWNVYREIARPDGTKLKWRYFCMGCKRVMQSTGGTTSNLRIHKCHVR YIKQNGHLTDGSHSYDHDPAPPASQPSPRVQKPKTRRPTSYSTQCEQFYE VTMDPETQYSDLDDEIEASLEEEQTLKSKRELESSHSRPLLKLFSEENLS TEPEEPEDEIEIVEAEDQVPIELDLCDIQHTTSDAGGEAIEPKPTESVAQ FDANAISEAESYAKAWAHAFLRLNEDQKFYAKRSIDELLVLGRLERLSIS TVTSLTTNL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23587-PA | 280 | GF23587-PA | 1..280 | 16..309 | 823 | 57 | Plus |
Dana\GF20046-PA | 338 | GF20046-PA | 6..77 | 29..102 | 230 | 55.4 | Plus |
Dana\GF10849-PA | 217 | GF10849-PA | 7..82 | 33..106 | 193 | 47.4 | Plus |
Dana\GF10849-PA | 217 | GF10849-PA | 163..214 | 252..303 | 167 | 55.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15558-PA | 299 | GG15558-PA | 1..299 | 7..309 | 1266 | 82.6 | Plus |
Dere\GG15557-PA | 367 | GG15557-PA | 13..94 | 28..111 | 225 | 51.2 | Plus |
Dere\GG13372-PA | 213 | GG13372-PA | 7..80 | 33..104 | 193 | 47.3 | Plus |
Dere\GG13372-PA | 213 | GG13372-PA | 142..209 | 235..302 | 166 | 47.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14652-PA | 313 | GH14652-PA | 1..313 | 16..309 | 696 | 50.2 | Plus |
Dgri\GH16915-PA | 252 | GH16915-PA | 7..83 | 33..107 | 183 | 45.5 | Plus |
Dgri\GH16915-PA | 252 | GH16915-PA | 193..251 | 251..306 | 158 | 52.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11560-PA | 303 | CG11560-PA | 1..303 | 7..309 | 1581 | 100 | Plus |
CG11560-PB | 307 | CG11560-PB | 1..307 | 7..309 | 1566 | 98.7 | Plus |
ssp-PA | 368 | CG17153-PA | 14..86 | 29..103 | 210 | 54.7 | Plus |
CG34116-PA | 211 | CG34116-PA | 7..123 | 33..128 | 184 | 36.8 | Plus |
CG34116-PA | 211 | CG34116-PA | 99..207 | 201..302 | 162 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11637-PA | 274 | GI11637-PA | 1..274 | 16..309 | 736 | 55.7 | Plus |
Dmoj\GI13669-PA | 153 | GI13669-PA | 84..152 | 242..306 | 153 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15729-PA | 290 | GL15729-PA | 1..290 | 16..309 | 772 | 54.4 | Plus |
Dper\GL15728-PA | 391 | GL15728-PA | 23..97 | 29..103 | 257 | 57.3 | Plus |
Dper\GL15680-PA | 121 | GL15680-PA | 66..117 | 251..302 | 153 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23781-PA | 290 | GA23781-PA | 1..290 | 16..309 | 772 | 54.1 | Plus |
Dpse\GA23780-PA | 378 | GA23780-PA | 19..93 | 29..103 | 256 | 57.3 | Plus |
Dpse\GA23501-PA | 123 | GA23501-PA | 68..119 | 251..302 | 151 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25326-PA | 298 | GM25326-PA | 1..298 | 7..309 | 1437 | 89.4 | Plus |
Dsec\GM25325-PA | 368 | GM25325-PA | 19..86 | 34..103 | 220 | 57.1 | Plus |
Dsec\GM16254-PA | 211 | GM16254-PA | 7..82 | 33..106 | 191 | 46.1 | Plus |
Dsec\GM16254-PA | 211 | GM16254-PA | 147..207 | 242..302 | 155 | 45.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14356-PA | 298 | GD14356-PA | 1..298 | 7..309 | 1459 | 90.8 | Plus |
Dsim\GD12250-PA | 211 | GD12250-PA | 7..82 | 33..106 | 192 | 46.1 | Plus |
Dsim\GD12250-PA | 211 | GD12250-PA | 156..207 | 251..302 | 159 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11319-PA | 281 | GJ11319-PA | 1..281 | 16..309 | 734 | 55.1 | Plus |
Dvir\GJ14005-PA | 256 | GJ14005-PA | 7..255 | 33..306 | 292 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16966-PA | 344 | GK16966-PA | 1..344 | 16..309 | 669 | 44.5 | Plus |
Dwil\GK16703-PA | 264 | GK16703-PA | 7..87 | 33..111 | 186 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21882-PA | 305 | GE21882-PA | 1..305 | 7..309 | 1332 | 84.3 | Plus |
Dyak\GE21881-PA | 368 | GE21881-PA | 19..86 | 34..103 | 216 | 55.7 | Plus |
Dyak\GE22465-PA | 213 | GE22465-PA | 7..80 | 33..104 | 193 | 47.3 | Plus |
Dyak\GE22465-PA | 213 | GE22465-PA | 139..209 | 232..302 | 166 | 45.1 | Plus |
Dyak\GE14589-PA | 101 | GE14589-PA | 46..97 | 251..302 | 164 | 53.8 | Plus |