![]() | BDGP Sequence Production Resources |
Search the DGRC for RE23862
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 238 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Prosalpha3-RA |
Protein status: | RE23862.pep: gold |
Preliminary Size: | 959 |
Sequenced Size: | 988 |
Gene | Date | Evidence |
---|---|---|
CG9327 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9327 | 2002-02-22 | Blastp of sequenced clone |
CG9327 | 2003-01-01 | Sim4 clustering to Release 3 |
Pros29 | 2008-04-29 | Release 5.5 accounting |
Pros29 | 2008-08-15 | Release 5.9 accounting |
Pros29 | 2008-12-18 | 5.12 accounting |
988 bp (988 high quality bases) assembled on 2002-02-22
GenBank Submission: AY084140
> RE23862.complete ATGGTGGCAGTCTGGCAACCCTACACTGAATGACAAGTAAATTCTGTTCG TTTTGCAAAATAAACTTGTAAATTGGTATATTCCTTAGCAATGGCTCGCC GCTATGATTCCCGCACCACGATCTTCTCGCCGGAGGGCCGTTTGTACCAG GTGGAGTACGCCATGGAGGCCATCTCGCACGCCGGAACCTGCCTCGGAAT CCTCGCCGAGGACGGCATCCTGTTGGCAGCCGAGTGCCGCAGCACAAACA AATTGCTGGACAGCGCCATTCCTTCGGAGAAGATCTATCGCCTGAACGAC AACATGGTCTGCTCGGTGGCTGGCATCACCTCCGATGCCAATGTGCTGAC CTCAGAACTGCGTCTGATTGCCCAGCGTTACCAGTTCAGCTACGGCGAGG TGATTCCCTGCGAGCAGCTGGTGTCGCACCTCTGCGACATCAAACAGGCG TACACTCAGTACGGCGGAAAGCGTCCCTTCGGCGTCTCGCTGCTCTACAT GGGATGGGACAACAAGTACGGCTACCAACTGTACCAGTCGGATCCCAGCG GCAACTACGGCGGATGGAAGGCCACCTGTATTGGCAACAACTTCGGTGCC GCGATCTCCATGCTGAAGCAGGAGCTGGCCGATAAGGAGAACGTGAAGCT GACGCTGGCGGACGCCAAGGATTTGGCCATCAAGGTACTGAGCATGACCC TGGACACCACCAAGCTGACCCCGGAGAAGGTCGAGATGGCCACGCTGCAG CGTGTGGACAATAAGACCGTATACAGTGTCCTGGAGAAACCCGATGTGGA GAAGCTGATCGAGAAGTACACAAAGGTACAGGCGGAGGCCGAGGCTGCCA AGAAGGAGAAGCAAGCGAAGCAGCCGACCAAGTAATCCCAAGGATGCATT ATTATTGATTAAGGGTCTATCCTGATTTTTGTAACCGATGTACGGAGTGT GTGAAATAAAATTTCAAAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pros29-RA | 1101 | Pros29-RA | 115..1088 | 4..977 | 4870 | 100 | Plus |
Pros29.a | 955 | Pros29.a | 71..955 | 89..973 | 4425 | 100 | Plus |
Prosalpha3T-RA | 1385 | Prosalpha3T-RA | 399..552 | 356..509 | 290 | 79.2 | Plus |
Prosalpha3T-RA | 1385 | Prosalpha3T-RA | 152..273 | 106..227 | 235 | 79.5 | Plus |
Pros29.a | 955 | Pros29.a | 38..70 | 4..36 | 165 | 100 | Plus |
Prosalpha3T-RA | 1385 | Prosalpha3T-RA | 573..628 | 530..585 | 160 | 85.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16881878..16882550 | 300..972 | 3335 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 16881534..16881740 | 93..299 | 990 | 98.6 | Plus |
chr2R | 21145070 | chr2R | 16881337..16881426 | 5..94 | 450 | 100 | Plus |
chr3R | 27901430 | chr3R | 26945283..26945512 | 585..356 | 385 | 77.8 | Minus |
chr3R | 27901430 | chr3R | 26945638..26945759 | 227..106 | 220 | 78.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20995446..20996123 | 300..977 | 3390 | 100 | Plus |
2R | 25286936 | 2R | 20995102..20995308 | 93..299 | 1035 | 100 | Plus |
2R | 25286936 | 2R | 20994904..20994994 | 4..94 | 455 | 100 | Plus |
3R | 32079331 | 3R | 31122890..31123119 | 585..356 | 370 | 77.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20996645..20997322 | 300..977 | 3390 | 100 | Plus |
2R | 25260384 | 2R | 20996301..20996507 | 93..299 | 1035 | 100 | Plus |
2R | 25260384 | 2R | 20996103..20996193 | 4..94 | 455 | 100 | Plus |
3R | 31820162 | 3R | 30863797..30863950 | 509..356 | 290 | 79.2 | Minus |
3R | 31820162 | 3R | 30864076..30864197 | 227..106 | 235 | 79.5 | Minus |
3R | 31820162 | 3R | 30863721..30863776 | 585..530 | 160 | 85.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16881334..16881425 | 1..93 | 96 | -> | Plus |
chr2R | 16881535..16881740 | 94..299 | 98 | -> | Plus |
chr2R | 16881878..16882550 | 300..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 1..795 | 91..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 1..795 | 91..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha3-RA | 1..795 | 91..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 1..795 | 91..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha3-RA | 1..795 | 91..885 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 1..971 | 3..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 36..999 | 1..965 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha3-RA | 1..973 | 2..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pros29-RA | 1..971 | 3..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Prosalpha3-RA | 1..973 | 2..972 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20994902..20994993 | 1..93 | 97 | -> | Plus |
2R | 20995103..20995308 | 94..299 | 100 | -> | Plus |
2R | 20995446..20996118 | 300..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20994902..20994993 | 1..93 | 97 | -> | Plus |
2R | 20995103..20995308 | 94..299 | 100 | -> | Plus |
2R | 20995446..20996118 | 300..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20994902..20994993 | 1..93 | 97 | -> | Plus |
2R | 20995103..20995308 | 94..299 | 100 | -> | Plus |
2R | 20995446..20996118 | 300..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16882407..16882498 | 1..93 | 97 | -> | Plus |
arm_2R | 16882608..16882813 | 94..299 | 100 | -> | Plus |
arm_2R | 16882951..16883623 | 300..972 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20996645..20997317 | 300..972 | 100 | Plus | |
2R | 20996101..20996192 | 1..93 | 97 | -> | Plus |
2R | 20996302..20996507 | 94..299 | 100 | -> | Plus |
Translation from 90 to 884
> RE23862.pep MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECR STNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFS YGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQS DPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVL SMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEKYTKVQAEA EAAKKEKQAKQPTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12213-PA | 265 | GF12213-PA | 1..264 | 1..264 | 1296 | 95.8 | Plus |
Dana\GF17957-PA | 234 | GF17957-PA | 3..222 | 2..223 | 365 | 37.4 | Plus |
Dana\GF11246-PA | 252 | GF11246-PA | 1..215 | 1..220 | 326 | 32.1 | Plus |
Dana\GF13117-PA | 243 | GF13117-PA | 8..239 | 5..240 | 300 | 34 | Plus |
Dana\GF11235-PA | 244 | GF11235-PA | 9..239 | 5..242 | 296 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22074-PA | 264 | GG22074-PA | 1..264 | 1..264 | 1405 | 99.6 | Plus |
Dere\GG11887-PA | 254 | GG11887-PA | 1..248 | 1..249 | 880 | 65.1 | Plus |
Dere\GG18927-PA | 234 | GG18927-PA | 5..226 | 4..227 | 360 | 39.4 | Plus |
Dere\GG19922-PA | 252 | GG19922-PA | 1..250 | 1..257 | 320 | 29.9 | Plus |
Dere\GG15180-PA | 251 | GG15180-PA | 1..215 | 1..221 | 306 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20521-PA | 263 | GH20521-PA | 1..244 | 1..246 | 1216 | 91.5 | Plus |
Dgri\GH13898-PA | 234 | GH13898-PA | 5..226 | 4..227 | 363 | 37.1 | Plus |
Dgri\GH21393-PA | 245 | GH21393-PA | 8..242 | 5..241 | 340 | 36.6 | Plus |
Dgri\GH13363-PA | 288 | GH13363-PA | 5..177 | 4..180 | 301 | 38.4 | Plus |
Dgri\GH20892-PA | 254 | GH20892-PA | 5..249 | 5..257 | 297 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosalpha3-PA | 264 | CG9327-PA | 1..264 | 1..264 | 1354 | 100 | Plus |
Prosalpha3T-PA | 251 | CG1736-PA | 1..241 | 1..242 | 829 | 64 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 5..230 | 4..231 | 343 | 39.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..257 | 335 | 30 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..257 | 335 | 30 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 1..249 | 1..255 | 310 | 29 | Plus |
Prosalpha6-PA | 279 | CG4904-PA | 5..176 | 4..179 | 297 | 38.1 | Plus |
Prosalpha6-PB | 279 | CG4904-PB | 5..176 | 4..179 | 297 | 38.1 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 1..249 | 1..255 | 294 | 29 | Plus |
Prosalpha1-PB | 244 | CG18495-PB | 9..239 | 5..242 | 290 | 30.3 | Plus |
Prosalpha1-PA | 244 | CG18495-PA | 9..239 | 5..242 | 290 | 30.3 | Plus |
CG30382-PB | 244 | CG30382-PB | 9..239 | 5..242 | 290 | 30.3 | Plus |
CG30382-PA | 244 | CG30382-PA | 9..239 | 5..242 | 290 | 30.3 | Plus |
Prosalpha6T-PA | 289 | CG5648-PA | 5..181 | 4..184 | 288 | 37 | Plus |
Prosalpha7-PA | 253 | CG1519-PA | 8..252 | 5..263 | 279 | 29.3 | Plus |
Prosalpha5-PB | 244 | CG10938-PB | 8..241 | 5..241 | 278 | 33.7 | Plus |
Prosalpha5-PA | 244 | CG10938-PA | 8..241 | 5..241 | 278 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21067-PA | 263 | GI21067-PA | 1..244 | 1..246 | 1237 | 93.1 | Plus |
Dmoj\GI24829-PA | 234 | GI24829-PA | 5..226 | 4..227 | 363 | 37.1 | Plus |
Dmoj\GI18902-PA | 253 | GI18902-PA | 4..163 | 5..165 | 305 | 37.3 | Plus |
Dmoj\GI18573-PA | 245 | GI18573-PA | 8..219 | 5..216 | 305 | 36.7 | Plus |
Dmoj\GI18257-PA | 254 | GI18257-PA | 4..197 | 1..195 | 296 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10139-PA | 262 | GL10139-PA | 1..260 | 1..262 | 1319 | 93.9 | Plus |
Dper\GL22394-PA | 246 | GL22394-PA | 1..241 | 1..245 | 765 | 59.3 | Plus |
Dper\GL27312-PA | 234 | GL27312-PA | 3..226 | 2..227 | 366 | 36.8 | Plus |
Dper\GL20413-PA | 252 | GL20413-PA | 1..215 | 1..220 | 329 | 33.2 | Plus |
Dper\GL11421-PA | 244 | GL11421-PA | 8..240 | 5..240 | 308 | 34.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21704-PA | 262 | GA21704-PA | 1..260 | 1..262 | 1316 | 93.9 | Plus |
Dpse\GA28930-PA | 246 | GA28930-PA | 1..241 | 1..245 | 764 | 59.3 | Plus |
Dpse\GA18772-PA | 234 | GA18772-PA | 3..226 | 2..227 | 366 | 36.8 | Plus |
Dpse\GA25111-PA | 252 | GA25111-PA | 1..215 | 1..220 | 329 | 33.2 | Plus |
Dpse\GA25292-PA | 249 | GA25292-PA | 1..249 | 1..258 | 311 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15792-PA | 264 | GM15792-PA | 1..264 | 1..264 | 1404 | 99.2 | Plus |
Dsec\GM12106-PA | 257 | GM12106-PA | 1..242 | 1..243 | 841 | 63 | Plus |
Dsec\GM24033-PA | 234 | GM24033-PA | 5..226 | 4..227 | 359 | 39.4 | Plus |
Dsec\Pros28.1B-PA | 252 | GM11825-PA | 1..250 | 1..257 | 351 | 30.4 | Plus |
Dsec\GM20751-PA | 244 | GM20751-PA | 9..239 | 5..242 | 310 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11553-PA | 264 | GD11553-PA | 1..264 | 1..264 | 1404 | 99.2 | Plus |
Dsim\GD16600-PA | 257 | GD16600-PA | 1..242 | 1..243 | 845 | 63 | Plus |
Dsim\GD18834-PA | 234 | GD18834-PA | 5..226 | 4..227 | 359 | 39.4 | Plus |
Dsim\Pros28.1B-PA | 252 | GD24946-PA | 1..250 | 1..257 | 351 | 30.4 | Plus |
Dsim\GD10216-PA | 244 | GD10216-PA | 9..239 | 5..242 | 310 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21990-PA | 263 | GJ21990-PA | 1..244 | 1..246 | 1184 | 93.1 | Plus |
Dvir\GJ24473-PA | 234 | GJ24473-PA | 5..226 | 4..227 | 363 | 37.9 | Plus |
Dvir\GJ20367-PA | 245 | GJ20367-PA | 8..243 | 5..242 | 315 | 33.2 | Plus |
Dvir\GJ20726-PA | 251 | GJ20726-PA | 5..248 | 5..257 | 305 | 32 | Plus |
Dvir\Pros28.1B-PA | 251 | GJ19357-PA | 3..214 | 4..220 | 300 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22956-PA | 262 | GK22956-PA | 1..244 | 1..246 | 1235 | 93.1 | Plus |
Dwil\GK14404-PA | 234 | GK14404-PA | 5..211 | 4..217 | 370 | 39.3 | Plus |
Dwil\GK21413-PA | 245 | GK21413-PA | 8..243 | 5..242 | 314 | 36.3 | Plus |
Dwil\GK23128-PA | 249 | GK23128-PA | 4..176 | 4..180 | 296 | 39 | Plus |
Dwil\GK21354-PA | 244 | GK21354-PA | 9..239 | 5..242 | 295 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12155-PA | 264 | GE12155-PA | 1..264 | 1..264 | 1405 | 99.6 | Plus |
Dyak\GE23336-PA | 253 | GE23336-PA | 1..253 | 1..254 | 881 | 64.2 | Plus |
Dyak\GE26194-PA | 234 | GE26194-PA | 5..226 | 4..227 | 362 | 39.4 | Plus |
Dyak\GE14482-PA | 70 | GE14482-PA | 1..70 | 1..70 | 350 | 95.7 | Plus |
Dyak\GE11446-PA | 252 | GE11446-PA | 1..250 | 1..257 | 325 | 31.2 | Plus |
Translation from 90 to 884
> RE23862.hyp MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECR STNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFS YGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQS DPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVL SMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEKYTKVQAEA EAAKKEKQAKQPTK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Prosalpha3-PA | 264 | CG9327-PA | 1..264 | 1..264 | 1354 | 100 | Plus |
Prosalpha3T-PA | 251 | CG1736-PA | 1..241 | 1..242 | 829 | 64 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 5..230 | 4..231 | 343 | 39.1 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 1..250 | 1..257 | 335 | 30 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 1..250 | 1..257 | 335 | 30 | Plus |