Clone RE23984 Report

Search the DGRC for RE23984

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:239
Well:84
Vector:pFlc-1
Associated Gene/TranscriptTrp1-RA
Protein status:RE23984.pep: gold
Preliminary Size:2215
Sequenced Size:2059

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4758 2002-01-01 Sim4 clustering to Release 2
CG4758 2003-01-01 Sim4 clustering to Release 3
CG4758 2003-02-07 Blastp of sequenced clone
Trp1 2008-04-29 Release 5.5 accounting
Trp1 2008-08-15 Release 5.9 accounting
Trp1 2008-12-18 5.12 accounting

Clone Sequence Records

RE23984.complete Sequence

2059 bp (2059 high quality bases) assembled on 2003-02-07

GenBank Submission: BT003520

> RE23984.complete
ATCGACTTTTGTTCCATCCCTATCGTGGATGTTTATGTGGTGCGTGTGTG
GCAGAATTATTATCAAAATTATTGAAAGAATCAATTTTGAGCCCGCAGAT
CGTCACACTTGCTAGAAAATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAA
GGATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGG
ACGAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAG
ACCAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCAT
CGATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCA
CCACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAG
TTCTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGG
AAAGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGG
AAAAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGAT
AATGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAA
AAAGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGA
TCTTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCG
CTCCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCAT
TTGCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACT
TGTCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATT
GTACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTT
GCACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCT
CCTTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCG
TCCGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAA
AGAAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACG
GTGATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTC
ATCAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGG
TGCCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGC
AGCCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCG
GAGAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAA
CGTTGCTGGCAACTAATATGAAGAAACCACAATATATATATATATTATTA
TTTAATGATCCACATCTAGCTAATTGATAAGACATAGAACAAGAATCACA
CATCAAGTACATCAGCAAACACACACGATTCCAAGTACAGCGAATTATTG
TCCCACAAGAAATGCGATCGGTGTCGTTATTCTTTATTGAAGATTTCCTA
ATCTGCTTTAAATTGAGCTTAGGTTTGAGGTTTTGCAATATTTTTTATTG
TTGGATGTAGGCTTGCATATGAAACACAATATTTTTAAACGGAATATTAT
GTGAGACAAAGACATTTGGTTATGCACCATGCAGTTGGACATCTTTTTTT
CGCAAAAGTTCTTAAGCCGTTAAACAAACTACCTATATTTTACCTATTTG
TATTCCTATGTTTGTAAATGTATACAGTGGAACGCACTAGGCAGGTGCAA
GAAACGATTGCAATTGATAATAATCATAGCGAGTACGTACGTAGATGTGA
GCGCATACGTTTCTATGTGCATGAATATTTACTCTACATGTAATTAAAGC
AAACTAACAACTTAATGAAATTAGTAGTGTAACACGCAATTAACTATTAT
ATAAATAAAGCTAGGCAATTCTGATCTGATGTGAGAGATATTTGAGCGTT
TTTTAGTTCTTGCTCGAACGTTTTATTAAAAAATATACAACATGAAAAAA
AAAAAAAAA

RE23984.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RA 2218 Trp1-RA 84..2126 1..2043 10215 100 Plus
Trp1.b 2015 Trp1.b 69..2014 98..2043 9730 100 Plus
Trp1.a 1979 Trp1.a 34..1978 99..2043 9725 100 Plus
Trp1.b 2015 Trp1.b 31..69 1..39 195 100 Plus
Trp1.a 1979 Trp1.a 1..33 4..36 165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10009702..10010517 155..970 4080 100 Plus
chr2L 23010047 chr2L 10011365..10012136 1272..2043 3860 100 Plus
chr2L 23010047 chr2L 10010570..10010873 969..1272 1520 100 Plus
chr2L 23010047 chr2L 10008336..10008490 1..155 775 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011552 155..970 4080 100 Plus
2L 23513712 2L 10012399..10013170 1272..2043 3860 100 Plus
2L 23513712 2L 10011605..10011908 969..1272 1520 100 Plus
2L 23513712 2L 10009383..10009537 1..155 775 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011552 155..970 4080 100 Plus
2L 23513712 2L 10012399..10013170 1272..2043 3860 100 Plus
2L 23513712 2L 10011605..10011908 969..1272 1520 100 Plus
2L 23513712 2L 10009383..10009537 1..155 775 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:58:22 has no hits.

RE23984.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:59:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10008336..10008489 1..154 100 -> Plus
chr2L 10009702..10010010 155..463 100 == Plus
chr2L 10010164..10010517 617..970 100 -> Plus
chr2L 10010572..10010873 971..1272 100 -> Plus
chr2L 10011366..10012136 1273..2044 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:40 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 119..1366 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:49:13 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 119..1366 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 119..1366 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:31:11 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 119..1366 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:16 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 119..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:59:31 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..2040 4..2044 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:49:13 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..2040 4..2044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 3..2045 1..2043 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:31:11 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..2040 4..2044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:16 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 3..2045 1..2043 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10011607..10011908 971..1272 100 -> Plus
2L 10009383..10009536 1..154 100 -> Plus
2L 10010737..10011552 155..970 100 -> Plus
2L 10012400..10013170 1273..2044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10011607..10011908 971..1272 100 -> Plus
2L 10009383..10009536 1..154 100 -> Plus
2L 10010737..10011552 155..970 100 -> Plus
2L 10012400..10013170 1273..2044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10011607..10011908 971..1272 100 -> Plus
2L 10009383..10009536 1..154 100 -> Plus
2L 10010737..10011552 155..970 100 -> Plus
2L 10012400..10013170 1273..2044 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:00 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009383..10009536 1..154 100 -> Plus
arm_2L 10010737..10011552 155..970 100 -> Plus
arm_2L 10011607..10011908 971..1272 100 -> Plus
arm_2L 10012400..10013170 1273..2044 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:10:10 Download gff for RE23984.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10010737..10011552 155..970 100 -> Plus
2L 10011607..10011908 971..1272 100 -> Plus
2L 10012400..10013170 1273..2044 99   Plus
2L 10009383..10009536 1..154 100 -> Plus

RE23984.hyp Sequence

Translation from 118 to 1365

> RE23984.hyp
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGN*

RE23984.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PA 415 CG4758-PA 1..415 1..415 2161 100 Plus
Trp1-PB 428 CG4758-PB 26..428 13..415 2102 100 Plus
Trp1-PD 385 CG4758-PD 1..385 1..385 2014 100 Plus
Trp1-PC 398 CG4758-PC 26..398 13..385 1955 100 Plus

RE23984.pep Sequence

Translation from 118 to 1365

> RE23984.pep
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGN*

RE23984.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15737-PA 422 GF15737-PA 22..422 13..415 1439 86 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10077-PA 423 GG10077-PA 1..423 1..415 1555 92.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11069-PA 453 GH11069-PA 29..453 13..415 1266 72.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PA 415 CG4758-PA 1..415 1..415 2161 100 Plus
Trp1-PB 428 CG4758-PB 26..428 13..415 2102 100 Plus
Trp1-PD 385 CG4758-PD 1..385 1..385 2014 100 Plus
Trp1-PC 398 CG4758-PC 26..398 13..385 1955 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17586-PA 427 GI17586-PA 1..427 1..415 1366 74.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18954-PA 413 GL18954-PA 26..413 13..415 1432 83.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18410-PA 413 GA18410-PA 26..413 13..415 1432 83.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17862-PA 409 GM17862-PA 24..409 13..415 1406 89.9 Plus
Dsec\GM18782-PA 268 GM18782-PA 24..268 13..255 1241 96.3 Plus
Dsec\GM11063-PA 326 GM11063-PA 2..326 93..415 1171 92.9 Plus
Dsec\GM11065-PA 256 GM11065-PA 2..256 93..385 789 79 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23649-PA 447 GD23649-PA 1..447 1..415 1546 87.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17928-PA 438 GJ17928-PA 1..438 1..415 1346 75.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12718-PA 427 GK12718-PA 1..427 1..415 1460 76.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18890-PA 417 GE18890-PA 1..417 1..415 2081 95.9 Plus