BDGP Sequence Production Resources |
Search the DGRC for RE23984
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 239 |
Well: | 84 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Trp1-RA |
Protein status: | RE23984.pep: gold |
Preliminary Size: | 2215 |
Sequenced Size: | 2059 |
Gene | Date | Evidence |
---|---|---|
CG4758 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4758 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4758 | 2003-02-07 | Blastp of sequenced clone |
Trp1 | 2008-04-29 | Release 5.5 accounting |
Trp1 | 2008-08-15 | Release 5.9 accounting |
Trp1 | 2008-12-18 | 5.12 accounting |
2059 bp (2059 high quality bases) assembled on 2003-02-07
GenBank Submission: BT003520
> RE23984.complete ATCGACTTTTGTTCCATCCCTATCGTGGATGTTTATGTGGTGCGTGTGTG GCAGAATTATTATCAAAATTATTGAAAGAATCAATTTTGAGCCCGCAGAT CGTCACACTTGCTAGAAAATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAA GGATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGG ACGAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAG ACCAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCAT CGATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCA CCACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAG TTCTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGG AAAGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGG AAAAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGAT AATGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAA AAAGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGA TCTTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCG CTCCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCAT TTGCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACT TGTCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATT GTACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTT GCACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCT CCTTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCG TCCGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAA AGAAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACG GTGATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTC ATCAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGG TGCCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGC AGCCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCG GAGAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAA CGTTGCTGGCAACTAATATGAAGAAACCACAATATATATATATATTATTA TTTAATGATCCACATCTAGCTAATTGATAAGACATAGAACAAGAATCACA CATCAAGTACATCAGCAAACACACACGATTCCAAGTACAGCGAATTATTG TCCCACAAGAAATGCGATCGGTGTCGTTATTCTTTATTGAAGATTTCCTA ATCTGCTTTAAATTGAGCTTAGGTTTGAGGTTTTGCAATATTTTTTATTG TTGGATGTAGGCTTGCATATGAAACACAATATTTTTAAACGGAATATTAT GTGAGACAAAGACATTTGGTTATGCACCATGCAGTTGGACATCTTTTTTT CGCAAAAGTTCTTAAGCCGTTAAACAAACTACCTATATTTTACCTATTTG TATTCCTATGTTTGTAAATGTATACAGTGGAACGCACTAGGCAGGTGCAA GAAACGATTGCAATTGATAATAATCATAGCGAGTACGTACGTAGATGTGA GCGCATACGTTTCTATGTGCATGAATATTTACTCTACATGTAATTAAAGC AAACTAACAACTTAATGAAATTAGTAGTGTAACACGCAATTAACTATTAT ATAAATAAAGCTAGGCAATTCTGATCTGATGTGAGAGATATTTGAGCGTT TTTTAGTTCTTGCTCGAACGTTTTATTAAAAAATATACAACATGAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trp1-RA | 2218 | Trp1-RA | 84..2126 | 1..2043 | 10215 | 100 | Plus |
Trp1.b | 2015 | Trp1.b | 69..2014 | 98..2043 | 9730 | 100 | Plus |
Trp1.a | 1979 | Trp1.a | 34..1978 | 99..2043 | 9725 | 100 | Plus |
Trp1.b | 2015 | Trp1.b | 31..69 | 1..39 | 195 | 100 | Plus |
Trp1.a | 1979 | Trp1.a | 1..33 | 4..36 | 165 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10009702..10010517 | 155..970 | 4080 | 100 | Plus |
chr2L | 23010047 | chr2L | 10011365..10012136 | 1272..2043 | 3860 | 100 | Plus |
chr2L | 23010047 | chr2L | 10010570..10010873 | 969..1272 | 1520 | 100 | Plus |
chr2L | 23010047 | chr2L | 10008336..10008490 | 1..155 | 775 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10010737..10011552 | 155..970 | 4080 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10013170 | 1272..2043 | 3860 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 969..1272 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10009383..10009537 | 1..155 | 775 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10010737..10011552 | 155..970 | 4080 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10013170 | 1272..2043 | 3860 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 969..1272 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10009383..10009537 | 1..155 | 775 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10008336..10008489 | 1..154 | 100 | -> | Plus |
chr2L | 10009702..10010010 | 155..463 | 100 | == | Plus |
chr2L | 10010164..10010517 | 617..970 | 100 | -> | Plus |
chr2L | 10010572..10010873 | 971..1272 | 100 | -> | Plus |
chr2L | 10011366..10012136 | 1273..2044 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..1248 | 119..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..1248 | 119..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..1248 | 119..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..1248 | 119..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..1248 | 119..1366 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..2040 | 4..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..2040 | 4..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 3..2045 | 1..2043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 1..2040 | 4..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Trp1-RA | 3..2045 | 1..2043 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10011607..10011908 | 971..1272 | 100 | -> | Plus |
2L | 10009383..10009536 | 1..154 | 100 | -> | Plus |
2L | 10010737..10011552 | 155..970 | 100 | -> | Plus |
2L | 10012400..10013170 | 1273..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10011607..10011908 | 971..1272 | 100 | -> | Plus |
2L | 10009383..10009536 | 1..154 | 100 | -> | Plus |
2L | 10010737..10011552 | 155..970 | 100 | -> | Plus |
2L | 10012400..10013170 | 1273..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10011607..10011908 | 971..1272 | 100 | -> | Plus |
2L | 10009383..10009536 | 1..154 | 100 | -> | Plus |
2L | 10010737..10011552 | 155..970 | 100 | -> | Plus |
2L | 10012400..10013170 | 1273..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10009383..10009536 | 1..154 | 100 | -> | Plus |
arm_2L | 10010737..10011552 | 155..970 | 100 | -> | Plus |
arm_2L | 10011607..10011908 | 971..1272 | 100 | -> | Plus |
arm_2L | 10012400..10013170 | 1273..2044 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10010737..10011552 | 155..970 | 100 | -> | Plus |
2L | 10011607..10011908 | 971..1272 | 100 | -> | Plus |
2L | 10012400..10013170 | 1273..2044 | 99 | Plus | |
2L | 10009383..10009536 | 1..154 | 100 | -> | Plus |
Translation from 118 to 1365
> RE23984.hyp MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD YEIISSSEVQNVAGN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trp1-PA | 415 | CG4758-PA | 1..415 | 1..415 | 2161 | 100 | Plus |
Trp1-PB | 428 | CG4758-PB | 26..428 | 13..415 | 2102 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 1..385 | 1..385 | 2014 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 26..398 | 13..385 | 1955 | 100 | Plus |
Translation from 118 to 1365
> RE23984.pep MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD YEIISSSEVQNVAGN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15737-PA | 422 | GF15737-PA | 22..422 | 13..415 | 1439 | 86 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10077-PA | 423 | GG10077-PA | 1..423 | 1..415 | 1555 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11069-PA | 453 | GH11069-PA | 29..453 | 13..415 | 1266 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Trp1-PA | 415 | CG4758-PA | 1..415 | 1..415 | 2161 | 100 | Plus |
Trp1-PB | 428 | CG4758-PB | 26..428 | 13..415 | 2102 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 1..385 | 1..385 | 2014 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 26..398 | 13..385 | 1955 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17586-PA | 427 | GI17586-PA | 1..427 | 1..415 | 1366 | 74.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18954-PA | 413 | GL18954-PA | 26..413 | 13..415 | 1432 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18410-PA | 413 | GA18410-PA | 26..413 | 13..415 | 1432 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17862-PA | 409 | GM17862-PA | 24..409 | 13..415 | 1406 | 89.9 | Plus |
Dsec\GM18782-PA | 268 | GM18782-PA | 24..268 | 13..255 | 1241 | 96.3 | Plus |
Dsec\GM11063-PA | 326 | GM11063-PA | 2..326 | 93..415 | 1171 | 92.9 | Plus |
Dsec\GM11065-PA | 256 | GM11065-PA | 2..256 | 93..385 | 789 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23649-PA | 447 | GD23649-PA | 1..447 | 1..415 | 1546 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17928-PA | 438 | GJ17928-PA | 1..438 | 1..415 | 1346 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12718-PA | 427 | GK12718-PA | 1..427 | 1..415 | 1460 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18890-PA | 417 | GE18890-PA | 1..417 | 1..415 | 2081 | 95.9 | Plus |