Clone RE24122 Report

Search the DGRC for RE24122

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:241
Well:22
Vector:pFlc-1
Associated Gene/Transcriptnuf-RE
Protein status:RE24122.pep: gold
Preliminary Size:1382
Sequenced Size:3117

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32140 2003-01-01 Sim4 clustering to Release 3
CG7867 2004-01-14 Blastp of sequenced clone
nuf 2008-04-29 Release 5.5 accounting
nuf 2008-08-15 Release 5.9 accounting
nuf 2008-12-18 5.12 accounting

Clone Sequence Records

RE24122.complete Sequence

3117 bp (3117 high quality bases) assembled on 2004-01-14

GenBank Submission: BT011468

> RE24122.complete
AGTTTGCTTTTCGCGTTTCGCGTGCTTTAATCGAAATTTGTTTTTCTCCC
TCGATTGTGCCAGAGCCAAGCTTAAATATGCCCAGAAAAGTGCCTTAAAG
TCAAATTGAGAGATGAAAACAAAGCAATACAAAAATATCTGAATTATGTG
CCTATAAAACTAAAATAAAACAGTCTTCCTACACAAATGAAAAATCACAA
AATAAAGAAACAAAACATCAAAGTGCGAAAATATATGAAAACAAAACATC
AATCCAACCAGTGCCACGCCCCAATAAGGAACAAAACTACCCAAAAATAA
AATAAAAAGTAAATCATGAGTAGTCAACCTGCCAGCCAGCCCGATAGCAT
CGATTTAGCCTATGATATGTGGGCGGGCCAATTCGAATTCGTAGGACCCA
CAAATCAGCAGAGCAACAAAAACAGCAACAACAACAACAACAATAGCAAT
TTGAACAACAACAAGTGCAGAATCGGAGCGCAACAAAACCGAAAACTATC
TACGGATAGTCTGGAGGATCTGAATTTGAGTTTTAACACAAGTGCCTCGC
AAAATCCGCTAAGCAACGCCTACAGTTTGGGAGTCACTGGCGGTGCTGGA
AGTGACTACTGTGGCTTTGGAAAACACCCGCCAATATTGATCGATCAGGA
GACGTTTCTCAGCCTCAATCCAGCGGACTTTGAGGACATTGTGCCATCCA
ATTCGGAGCCCAATTCGCTGGTTTTCATCGAAAACAAGCTGGAGACTAAC
AACAATAGCCTCGAATCGAACAACAATCATATAAACAATAATAATAACAA
TAAAATCTACAATTTGGAGAACCTGACAAGTAAATTCAATAATAAAACGA
ATAATACGAATACAAACGGTTTCAAATTGGAGAACCTAAAGAATTTCAAG
AACAAACTACTCTGTGATTTCGAGGATACCAATAGCGGGGGAGGAGGAGG
TGGTGGCAGTGGCGGATCAGGACCTGTTGGCATGATGAACGGCGCCCTCA
GCGCAGAGATTTGCGATAATCTCAATGAGCAACTGGAACTGCTGCAGCGC
AAGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAAC
CCGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTCG
AAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAG
GAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCTC
GCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAGATCGAGG
CAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTGTGACAAG
CAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGGCGCGCGA
CCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAGGCACTGC
GCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCTGGAGCTG
GGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGGCAATGCC
GACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAGGAGCTCG
AGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGAGGAGCTG
CAGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATGGCGTGGA
GCAGGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCAGGAGC
TCGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAAGGAG
GATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCAACAT
CGTGGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAAAGT
AGTGCAGTCTACTGGAAGAATAAACCAACCCTAGGCACTCGGCAGAGTGT
CACAACCACCTAACATTACCTAAAATTAATAAACTAACTAAACCATACTC
TATGTTAACTTTTTAAGCTACACTCTATACATGTATTTATGCCTAACTTA
AGTCATAATTTATTTTATAACAATTTAATGTAGATTTTTAAACCAAAACA
ACGCAGAGAACACAAAGATTGCATGTCAAAATGATAAAAAAGTCCTTAAT
TTGATTAGATTATGTTTTGTATAAAGAGAGTCCAAAATTATGTAAAAGTT
TATTTTCCTTCGTTTCTAGTTTGCGTTTTGTATAGTTCGTGTTGTTGATC
CATAAAGATATTACTTATAAATATTGTTAGATTTTAAGTCGTAAAAAATC
TTTCACTTATTAATGAAATGGAACCCAATAATTTATTGATAATTGCCAGA
AAATCTAATTGTGAATGTGTATAGCATAAAGAGATTTTATGAACTGTTGA
TGCTTGACAGGAAATATTTCCAATTTCGTCATGGCAGCTAAGAAGGTTTT
TGCTAGGACAAGTGCTCCATTTTTCAAATCTTTCCATCACATGCATACTT
CTTAAATCTTTCTATCCATATTTTGCACTCTCCGAAAAGATCTTCCCTAG
TTTGCCTGTAATGTAGTTACAAAAATCTATCAAAAAATTTGCGTTTATGG
TATGGACAATCCCAGGATACAAAGACGGAGTTTTAGTTTGATGTGAGTCT
AAATGAGAGCAATTATCACGAGGAGTTTATCAATTCAGAAGTTATATCTT
AATCCACACACATATGTCAATGTATAGCACAGATAAAACTAATCTTACTC
TGCATATAAAACAACATTAAATGGACATAATGTGCAAACGTTTAGGGATG
ACACATGATAGCTCCAACGAAAGCGATCCCTAATAGTCTTAGCAACTGAA
TAACTCAAGCGGTCAACCCTAATTTAGCTATAATAATATCCAAGAAAACT
CGATAATCGATGTGTAATCGTTAATCAAAATTTTATTGCCTTAAACGGAT
GTTTTAAAAAATGTACTAAGGCTTAGATAACTCTAACAAAAAAGTCCATA
AGGTTTAATGACATGCTGCGAAATATGGAATTTTAAATGTAATTTACTAG
ATGCAAGTCGCTGAACTTATATCAAAATAAAAAGAAGAATATTTTATAAA
CAAAAAAAAAAAAAAAA

RE24122.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-RF 3168 nuf-RF 1..3102 1..3102 15510 100 Plus
nuf-RE 3318 nuf-RE 209..3252 59..3102 15220 100 Plus
nuf.c 2530 nuf.c 1196..2527 1771..3102 6660 100 Plus
nuf.c 2530 nuf.c 419..1159 1033..1773 3705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14222026..14223354 1771..3101 6530 99.5 Plus
chr3L 24539361 chr3L 14215559..14216532 59..1032 4795 99.5 Plus
chr3L 24539361 chr3L 14220757..14221215 1166..1624 2280 99.8 Plus
chr3L 24539361 chr3L 14221280..14221428 1625..1773 685 97.3 Plus
chr3L 24539361 chr3L 14220275..14220409 1033..1167 675 100 Plus
chr3L 24539361 chr3L 14211571..14211629 1..59 295 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14231924..14233255 1771..3102 6660 100 Plus
3L 28110227 3L 14225430..14226403 59..1032 4870 100 Plus
3L 28110227 3L 14230654..14231112 1166..1624 2295 100 Plus
3L 28110227 3L 14231177..14231325 1625..1773 745 100 Plus
3L 28110227 3L 14230176..14230310 1033..1167 675 100 Plus
3L 28110227 3L 14221442..14221500 1..59 295 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14225024..14226355 1771..3102 6660 100 Plus
3L 28103327 3L 14218530..14219503 59..1032 4870 100 Plus
3L 28103327 3L 14223754..14224212 1166..1624 2295 100 Plus
3L 28103327 3L 14224277..14224425 1625..1773 745 100 Plus
3L 28103327 3L 14223276..14223410 1033..1167 675 100 Plus
3L 28103327 3L 14214542..14214600 1..59 295 100 Plus
Blast to na_te.dros performed 2019-03-15 20:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 1456..1703 2124..2362 217 59.4 Plus
S-element 1736 S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). 34..209 2362..2183 169 59.6 Minus
gypsy7 5486 gypsy7 GYPSY7 5486bp 4147..4268 707..820 121 62.6 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 131..238 2245..2353 119 59.1 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 2703..2760 1951..2008 119 67.2 Plus
invader2 5124 invader2 INVADER2 5124bp 1477..1565 83..170 118 62.2 Plus

RE24122.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:12:54 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14211571..14211629 1..59 100 -> Plus
chr3L 14215560..14216532 60..1032 99 -> Plus
chr3L 14220275..14220409 1033..1167 100 -> Plus
chr3L 14220759..14221215 1168..1624 99 -> Plus
chr3L 14221280..14221428 1625..1773 97 -> Plus
chr3L 14222029..14223354 1774..3101 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:11:25 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..1587 316..1902 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:41:56 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..1587 316..1902 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:08:41 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RE 1..1587 316..1902 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:30:43 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..1587 316..1902 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:17:56 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RE 1..1587 316..1902 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:11:25 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..3097 1..3097 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:41:56 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..3097 1..3097 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:41 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 3..3099 1..3097 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:30:43 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 1..3097 1..3097 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:17:56 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
nuf-RF 3..3099 1..3097 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:54 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14221442..14221500 1..59 100 -> Plus
3L 14225431..14226403 60..1032 100 -> Plus
3L 14230176..14230310 1033..1167 100 -> Plus
3L 14230656..14231112 1168..1624 100 -> Plus
3L 14231177..14231325 1625..1773 100 -> Plus
3L 14231927..14233254 1774..3101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:54 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14221442..14221500 1..59 100 -> Plus
3L 14225431..14226403 60..1032 100 -> Plus
3L 14230176..14230310 1033..1167 100 -> Plus
3L 14230656..14231112 1168..1624 100 -> Plus
3L 14231177..14231325 1625..1773 100 -> Plus
3L 14231927..14233254 1774..3101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:12:54 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14221442..14221500 1..59 100 -> Plus
3L 14225431..14226403 60..1032 100 -> Plus
3L 14230176..14230310 1033..1167 100 -> Plus
3L 14230656..14231112 1168..1624 100 -> Plus
3L 14231177..14231325 1625..1773 100 -> Plus
3L 14231927..14233254 1774..3101 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:41 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14214542..14214600 1..59 100 -> Plus
arm_3L 14218531..14219503 60..1032 100 -> Plus
arm_3L 14223276..14223410 1033..1167 100 -> Plus
arm_3L 14223756..14224212 1168..1624 100 -> Plus
arm_3L 14224277..14224425 1625..1773 100 -> Plus
arm_3L 14225027..14226354 1774..3101 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:03:16 Download gff for RE24122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14218531..14219503 60..1032 100 -> Plus
3L 14223276..14223410 1033..1167 100 -> Plus
3L 14223756..14224212 1168..1624 100 -> Plus
3L 14224277..14224425 1625..1773 100 -> Plus
3L 14225027..14226354 1774..3101 100   Plus
3L 14214542..14214600 1..59 100 -> Plus

RE24122.hyp Sequence

Translation from 315 to 1901

> RE24122.hyp
MSSQPASQPDSIDLAYDMWAGQFEFVGPTNQQSNKNSNNNNNNSNLNNNK
CRIGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCG
FGKHPPILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLE
SNNNHINNNNNNKIYNLENLTSKFNNKTNNTNTNGFKLENLKNFKNKLLC
DFEDTNSGGGGGGGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDL
SDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRH
REILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDL
HRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ
RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATML
TNQATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVR
LKHYIDTILLNIVENYPQLLEVKPMERK*

RE24122.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PF 528 CG33991-PF 1..528 1..528 2706 100 Plus
nuf-PE 528 CG33991-PE 1..528 1..528 2706 100 Plus
nuf-PK 541 CG33991-PK 1..541 1..528 2682 97.6 Plus
nuf-PJ 541 CG33991-PJ 1..541 1..528 2682 97.6 Plus
nuf-PB 305 CG33991-PB 1..305 224..528 1437 95.7 Plus

RE24122.pep Sequence

Translation from 315 to 1901

> RE24122.pep
MSSQPASQPDSIDLAYDMWAGQFEFVGPTNQQSNKNSNNNNNNSNLNNNK
CRIGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCG
FGKHPPILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLE
SNNNHINNNNNNKIYNLENLTSKFNNKTNNTNTNGFKLENLKNFKNKLLC
DFEDTNSGGGGGGGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDL
SDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRH
REILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDL
HRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ
RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATML
TNQATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVR
LKHYIDTILLNIVENYPQLLEVKPMERK*

RE24122.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24596-PA 525 GF24596-PA 234..525 237..528 1430 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15679-PA 526 GG15679-PA 1..526 1..528 2718 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17096-PA 544 GH17096-PA 256..544 240..528 1268 93.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
nuf-PF 528 CG33991-PF 1..528 1..528 2706 100 Plus
nuf-PE 528 CG33991-PE 1..528 1..528 2706 100 Plus
nuf-PK 541 CG33991-PK 1..541 1..528 2682 97.6 Plus
nuf-PJ 541 CG33991-PJ 1..541 1..528 2682 97.6 Plus
nuf-PA 502 CG33991-PA 79..502 144..528 1456 74.1 Plus
nuf-PC 502 CG33991-PC 79..502 144..528 1456 74.1 Plus
nuf-PB 305 CG33991-PB 1..305 224..528 1437 95.7 Plus
nuf-PD 316 CG33991-PD 28..316 240..528 1433 100 Plus
nuf-PL 515 CG33991-PL 79..515 144..528 1432 71.9 Plus
nuf-PH 529 CG33991-PH 78..529 144..528 1417 69.5 Plus
nuf-PG 530 CG33991-PG 79..530 144..528 1417 69.5 Plus
nuf-PM 318 CG33991-PM 1..318 224..528 1413 91.8 Plus
lva-PD 2779 CG6450-PD 1336..1535 241..463 160 22.4 Plus
lva-PC 2779 CG6450-PC 1336..1535 241..463 160 22.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11698-PA 533 GI11698-PA 245..533 240..528 1252 93.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21004-PA 756 GL21004-PA 452..756 224..528 1260 88.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23801-PA 639 GA23801-PA 245..639 163..528 1420 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25461-PA 526 GM25461-PA 1..526 1..528 2713 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14486-PA 98 GD14486-PA 1..98 431..528 481 98 Plus
Dsim\GD14485-PA 66 GD14485-PA 1..66 224..295 241 72.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11373-PA 531 GJ11373-PA 243..531 240..528 1335 94.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12678-PA 781 GK12678-PA 250..781 51..528 1791 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22009-PA 527 GE22009-PA 1..527 1..528 2691 97.7 Plus