BDGP Sequence Production Resources |
Search the DGRC for RE24122
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 241 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nuf-RE |
Protein status: | RE24122.pep: gold |
Preliminary Size: | 1382 |
Sequenced Size: | 3117 |
Gene | Date | Evidence |
---|---|---|
CG32140 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7867 | 2004-01-14 | Blastp of sequenced clone |
nuf | 2008-04-29 | Release 5.5 accounting |
nuf | 2008-08-15 | Release 5.9 accounting |
nuf | 2008-12-18 | 5.12 accounting |
3117 bp (3117 high quality bases) assembled on 2004-01-14
GenBank Submission: BT011468
> RE24122.complete AGTTTGCTTTTCGCGTTTCGCGTGCTTTAATCGAAATTTGTTTTTCTCCC TCGATTGTGCCAGAGCCAAGCTTAAATATGCCCAGAAAAGTGCCTTAAAG TCAAATTGAGAGATGAAAACAAAGCAATACAAAAATATCTGAATTATGTG CCTATAAAACTAAAATAAAACAGTCTTCCTACACAAATGAAAAATCACAA AATAAAGAAACAAAACATCAAAGTGCGAAAATATATGAAAACAAAACATC AATCCAACCAGTGCCACGCCCCAATAAGGAACAAAACTACCCAAAAATAA AATAAAAAGTAAATCATGAGTAGTCAACCTGCCAGCCAGCCCGATAGCAT CGATTTAGCCTATGATATGTGGGCGGGCCAATTCGAATTCGTAGGACCCA CAAATCAGCAGAGCAACAAAAACAGCAACAACAACAACAACAATAGCAAT TTGAACAACAACAAGTGCAGAATCGGAGCGCAACAAAACCGAAAACTATC TACGGATAGTCTGGAGGATCTGAATTTGAGTTTTAACACAAGTGCCTCGC AAAATCCGCTAAGCAACGCCTACAGTTTGGGAGTCACTGGCGGTGCTGGA AGTGACTACTGTGGCTTTGGAAAACACCCGCCAATATTGATCGATCAGGA GACGTTTCTCAGCCTCAATCCAGCGGACTTTGAGGACATTGTGCCATCCA ATTCGGAGCCCAATTCGCTGGTTTTCATCGAAAACAAGCTGGAGACTAAC AACAATAGCCTCGAATCGAACAACAATCATATAAACAATAATAATAACAA TAAAATCTACAATTTGGAGAACCTGACAAGTAAATTCAATAATAAAACGA ATAATACGAATACAAACGGTTTCAAATTGGAGAACCTAAAGAATTTCAAG AACAAACTACTCTGTGATTTCGAGGATACCAATAGCGGGGGAGGAGGAGG TGGTGGCAGTGGCGGATCAGGACCTGTTGGCATGATGAACGGCGCCCTCA GCGCAGAGATTTGCGATAATCTCAATGAGCAACTGGAACTGCTGCAGCGC AAGGTGGACGATCTGTCAGATACACAGAATATAGCTGAGGATCGGACAAC CCGCACCAAGACCGAATATGCAGTCCTTCAGGCGCGTTATCACATGCTCG AAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAGGAGCGTTTGGCAGAG GAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGTGGAGCGTGAAGCCTC GCTGCAGAACGAGAACTGCCAGATGAAGATCCGTGCCACCGAGATCGAGG CAACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGTCCTGTGTGACAAG CAGGCCAATGACCTCCATCGCACCGAGGAACAGTTGGAGCTGGCGCGCGA CCAAATCGGCGTCCTGCAACAGGAGCACGAGGAGCAGGCACAGGCACTGC GCCGCCACGAACAGGAGAAGAAGTCCACCGAGGAGCTGATGCTGGAGCTG GGCCGGGAACTGCAGCGTGCTCGCGAGGAGAGTGGAGCCCGGGCAATGCC GACCACATCGCCGGAGAGCATAAGACTGGAGGAGCTGCATCAGGAGCTCG AGGAGATGCGCCAGAAGAACCGAACCCTCGAAGAACAGAACGAGGAGCTG CAGGCCACGATGCTGACCAACCAGGCCACCATGCTGACAAATGGCGTGGA GCAGGGTCGCCATCTGCTGAACGGAACACTCAACAGTTTGGCTCAGGAGC TCGAGGAGATGTCACAAGCCCAGCTACAACAGGCCTTCCAGGAAAAGGAG GATGAAAATGTTCGGCTTAAGCACTATATTGATACCATTCTACTCAACAT CGTGGAGAACTATCCTCAATTGCTGGAAGTCAAGCCCATGGAGCGAAAGT AGTGCAGTCTACTGGAAGAATAAACCAACCCTAGGCACTCGGCAGAGTGT CACAACCACCTAACATTACCTAAAATTAATAAACTAACTAAACCATACTC TATGTTAACTTTTTAAGCTACACTCTATACATGTATTTATGCCTAACTTA AGTCATAATTTATTTTATAACAATTTAATGTAGATTTTTAAACCAAAACA ACGCAGAGAACACAAAGATTGCATGTCAAAATGATAAAAAAGTCCTTAAT TTGATTAGATTATGTTTTGTATAAAGAGAGTCCAAAATTATGTAAAAGTT TATTTTCCTTCGTTTCTAGTTTGCGTTTTGTATAGTTCGTGTTGTTGATC CATAAAGATATTACTTATAAATATTGTTAGATTTTAAGTCGTAAAAAATC TTTCACTTATTAATGAAATGGAACCCAATAATTTATTGATAATTGCCAGA AAATCTAATTGTGAATGTGTATAGCATAAAGAGATTTTATGAACTGTTGA TGCTTGACAGGAAATATTTCCAATTTCGTCATGGCAGCTAAGAAGGTTTT TGCTAGGACAAGTGCTCCATTTTTCAAATCTTTCCATCACATGCATACTT CTTAAATCTTTCTATCCATATTTTGCACTCTCCGAAAAGATCTTCCCTAG TTTGCCTGTAATGTAGTTACAAAAATCTATCAAAAAATTTGCGTTTATGG TATGGACAATCCCAGGATACAAAGACGGAGTTTTAGTTTGATGTGAGTCT AAATGAGAGCAATTATCACGAGGAGTTTATCAATTCAGAAGTTATATCTT AATCCACACACATATGTCAATGTATAGCACAGATAAAACTAATCTTACTC TGCATATAAAACAACATTAAATGGACATAATGTGCAAACGTTTAGGGATG ACACATGATAGCTCCAACGAAAGCGATCCCTAATAGTCTTAGCAACTGAA TAACTCAAGCGGTCAACCCTAATTTAGCTATAATAATATCCAAGAAAACT CGATAATCGATGTGTAATCGTTAATCAAAATTTTATTGCCTTAAACGGAT GTTTTAAAAAATGTACTAAGGCTTAGATAACTCTAACAAAAAAGTCCATA AGGTTTAATGACATGCTGCGAAATATGGAATTTTAAATGTAATTTACTAG ATGCAAGTCGCTGAACTTATATCAAAATAAAAAGAAGAATATTTTATAAA CAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-RF | 3168 | nuf-RF | 1..3102 | 1..3102 | 15510 | 100 | Plus |
nuf-RE | 3318 | nuf-RE | 209..3252 | 59..3102 | 15220 | 100 | Plus |
nuf.c | 2530 | nuf.c | 1196..2527 | 1771..3102 | 6660 | 100 | Plus |
nuf.c | 2530 | nuf.c | 419..1159 | 1033..1773 | 3705 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14222026..14223354 | 1771..3101 | 6530 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 14215559..14216532 | 59..1032 | 4795 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 14220757..14221215 | 1166..1624 | 2280 | 99.8 | Plus |
chr3L | 24539361 | chr3L | 14221280..14221428 | 1625..1773 | 685 | 97.3 | Plus |
chr3L | 24539361 | chr3L | 14220275..14220409 | 1033..1167 | 675 | 100 | Plus |
chr3L | 24539361 | chr3L | 14211571..14211629 | 1..59 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14231924..14233255 | 1771..3102 | 6660 | 100 | Plus |
3L | 28110227 | 3L | 14225430..14226403 | 59..1032 | 4870 | 100 | Plus |
3L | 28110227 | 3L | 14230654..14231112 | 1166..1624 | 2295 | 100 | Plus |
3L | 28110227 | 3L | 14231177..14231325 | 1625..1773 | 745 | 100 | Plus |
3L | 28110227 | 3L | 14230176..14230310 | 1033..1167 | 675 | 100 | Plus |
3L | 28110227 | 3L | 14221442..14221500 | 1..59 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14225024..14226355 | 1771..3102 | 6660 | 100 | Plus |
3L | 28103327 | 3L | 14218530..14219503 | 59..1032 | 4870 | 100 | Plus |
3L | 28103327 | 3L | 14223754..14224212 | 1166..1624 | 2295 | 100 | Plus |
3L | 28103327 | 3L | 14224277..14224425 | 1625..1773 | 745 | 100 | Plus |
3L | 28103327 | 3L | 14223276..14223410 | 1033..1167 | 675 | 100 | Plus |
3L | 28103327 | 3L | 14214542..14214600 | 1..59 | 295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1456..1703 | 2124..2362 | 217 | 59.4 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 34..209 | 2362..2183 | 169 | 59.6 | Minus |
gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 4147..4268 | 707..820 | 121 | 62.6 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 131..238 | 2245..2353 | 119 | 59.1 | Plus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 2703..2760 | 1951..2008 | 119 | 67.2 | Plus |
invader2 | 5124 | invader2 INVADER2 5124bp | 1477..1565 | 83..170 | 118 | 62.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14211571..14211629 | 1..59 | 100 | -> | Plus |
chr3L | 14215560..14216532 | 60..1032 | 99 | -> | Plus |
chr3L | 14220275..14220409 | 1033..1167 | 100 | -> | Plus |
chr3L | 14220759..14221215 | 1168..1624 | 99 | -> | Plus |
chr3L | 14221280..14221428 | 1625..1773 | 97 | -> | Plus |
chr3L | 14222029..14223354 | 1774..3101 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..1587 | 316..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..1587 | 316..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RE | 1..1587 | 316..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..1587 | 316..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RE | 1..1587 | 316..1902 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..3097 | 1..3097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..3097 | 1..3097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 3..3099 | 1..3097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 1..3097 | 1..3097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nuf-RF | 3..3099 | 1..3097 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14221442..14221500 | 1..59 | 100 | -> | Plus |
3L | 14225431..14226403 | 60..1032 | 100 | -> | Plus |
3L | 14230176..14230310 | 1033..1167 | 100 | -> | Plus |
3L | 14230656..14231112 | 1168..1624 | 100 | -> | Plus |
3L | 14231177..14231325 | 1625..1773 | 100 | -> | Plus |
3L | 14231927..14233254 | 1774..3101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14221442..14221500 | 1..59 | 100 | -> | Plus |
3L | 14225431..14226403 | 60..1032 | 100 | -> | Plus |
3L | 14230176..14230310 | 1033..1167 | 100 | -> | Plus |
3L | 14230656..14231112 | 1168..1624 | 100 | -> | Plus |
3L | 14231177..14231325 | 1625..1773 | 100 | -> | Plus |
3L | 14231927..14233254 | 1774..3101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14221442..14221500 | 1..59 | 100 | -> | Plus |
3L | 14225431..14226403 | 60..1032 | 100 | -> | Plus |
3L | 14230176..14230310 | 1033..1167 | 100 | -> | Plus |
3L | 14230656..14231112 | 1168..1624 | 100 | -> | Plus |
3L | 14231177..14231325 | 1625..1773 | 100 | -> | Plus |
3L | 14231927..14233254 | 1774..3101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14214542..14214600 | 1..59 | 100 | -> | Plus |
arm_3L | 14218531..14219503 | 60..1032 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 1033..1167 | 100 | -> | Plus |
arm_3L | 14223756..14224212 | 1168..1624 | 100 | -> | Plus |
arm_3L | 14224277..14224425 | 1625..1773 | 100 | -> | Plus |
arm_3L | 14225027..14226354 | 1774..3101 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14218531..14219503 | 60..1032 | 100 | -> | Plus |
3L | 14223276..14223410 | 1033..1167 | 100 | -> | Plus |
3L | 14223756..14224212 | 1168..1624 | 100 | -> | Plus |
3L | 14224277..14224425 | 1625..1773 | 100 | -> | Plus |
3L | 14225027..14226354 | 1774..3101 | 100 | Plus | |
3L | 14214542..14214600 | 1..59 | 100 | -> | Plus |
Translation from 315 to 1901
> RE24122.hyp MSSQPASQPDSIDLAYDMWAGQFEFVGPTNQQSNKNSNNNNNNSNLNNNK CRIGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCG FGKHPPILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLE SNNNHINNNNNNKIYNLENLTSKFNNKTNNTNTNGFKLENLKNFKNKLLC DFEDTNSGGGGGGGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDL SDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRH REILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDL HRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATML TNQATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVR LKHYIDTILLNIVENYPQLLEVKPMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PF | 528 | CG33991-PF | 1..528 | 1..528 | 2706 | 100 | Plus |
nuf-PE | 528 | CG33991-PE | 1..528 | 1..528 | 2706 | 100 | Plus |
nuf-PK | 541 | CG33991-PK | 1..541 | 1..528 | 2682 | 97.6 | Plus |
nuf-PJ | 541 | CG33991-PJ | 1..541 | 1..528 | 2682 | 97.6 | Plus |
nuf-PB | 305 | CG33991-PB | 1..305 | 224..528 | 1437 | 95.7 | Plus |
Translation from 315 to 1901
> RE24122.pep MSSQPASQPDSIDLAYDMWAGQFEFVGPTNQQSNKNSNNNNNNSNLNNNK CRIGAQQNRKLSTDSLEDLNLSFNTSASQNPLSNAYSLGVTGGAGSDYCG FGKHPPILIDQETFLSLNPADFEDIVPSNSEPNSLVFIENKLETNNNSLE SNNNHINNNNNNKIYNLENLTSKFNNKTNNTNTNGFKLENLKNFKNKLLC DFEDTNSGGGGGGGSGGSGPVGMMNGALSAEICDNLNEQLELLQRKVDDL SDTQNIAEDRTTRTKTEYAVLQARYHMLEEQYRESELRAEERLAEEQKRH REILARVEREASLQNENCQMKIRATEIEATALREEAARLRVLCDKQANDL HRTEEQLELARDQIGVLQQEHEEQAQALRRHEQEKKSTEELMLELGRELQ RAREESGARAMPTTSPESIRLEELHQELEEMRQKNRTLEEQNEELQATML TNQATMLTNGVEQGRHLLNGTLNSLAQELEEMSQAQLQQAFQEKEDENVR LKHYIDTILLNIVENYPQLLEVKPMERK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24596-PA | 525 | GF24596-PA | 234..525 | 237..528 | 1430 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15679-PA | 526 | GG15679-PA | 1..526 | 1..528 | 2718 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH17096-PA | 544 | GH17096-PA | 256..544 | 240..528 | 1268 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nuf-PF | 528 | CG33991-PF | 1..528 | 1..528 | 2706 | 100 | Plus |
nuf-PE | 528 | CG33991-PE | 1..528 | 1..528 | 2706 | 100 | Plus |
nuf-PK | 541 | CG33991-PK | 1..541 | 1..528 | 2682 | 97.6 | Plus |
nuf-PJ | 541 | CG33991-PJ | 1..541 | 1..528 | 2682 | 97.6 | Plus |
nuf-PA | 502 | CG33991-PA | 79..502 | 144..528 | 1456 | 74.1 | Plus |
nuf-PC | 502 | CG33991-PC | 79..502 | 144..528 | 1456 | 74.1 | Plus |
nuf-PB | 305 | CG33991-PB | 1..305 | 224..528 | 1437 | 95.7 | Plus |
nuf-PD | 316 | CG33991-PD | 28..316 | 240..528 | 1433 | 100 | Plus |
nuf-PL | 515 | CG33991-PL | 79..515 | 144..528 | 1432 | 71.9 | Plus |
nuf-PH | 529 | CG33991-PH | 78..529 | 144..528 | 1417 | 69.5 | Plus |
nuf-PG | 530 | CG33991-PG | 79..530 | 144..528 | 1417 | 69.5 | Plus |
nuf-PM | 318 | CG33991-PM | 1..318 | 224..528 | 1413 | 91.8 | Plus |
lva-PD | 2779 | CG6450-PD | 1336..1535 | 241..463 | 160 | 22.4 | Plus |
lva-PC | 2779 | CG6450-PC | 1336..1535 | 241..463 | 160 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11698-PA | 533 | GI11698-PA | 245..533 | 240..528 | 1252 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21004-PA | 756 | GL21004-PA | 452..756 | 224..528 | 1260 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA23801-PA | 639 | GA23801-PA | 245..639 | 163..528 | 1420 | 83.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25461-PA | 526 | GM25461-PA | 1..526 | 1..528 | 2713 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14486-PA | 98 | GD14486-PA | 1..98 | 431..528 | 481 | 98 | Plus |
Dsim\GD14485-PA | 66 | GD14485-PA | 1..66 | 224..295 | 241 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11373-PA | 531 | GJ11373-PA | 243..531 | 240..528 | 1335 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12678-PA | 781 | GK12678-PA | 250..781 | 51..528 | 1791 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22009-PA | 527 | GE22009-PA | 1..527 | 1..528 | 2691 | 97.7 | Plus |