Clone RE24176 Report

Search the DGRC for RE24176

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:241
Well:76
Vector:pFlc-1
Associated Gene/TranscriptCG2201-RB
Protein status:RE24176.pep: gold
Sequenced Size:2003

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2201-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE24176.complete Sequence

2003 bp assembled on 2009-09-22

GenBank Submission: BT099790.1

> RE24176.complete
AGTTTGTTTTCGTACGCCCAGCTGGGAACTACTAACTGCTAAGAGCTCAA
CGAAAAGACTAACTGTGTGCCTTCGCTACATTTTTTAAATTTATATAATA
CGATTTCTATCATATAGTACATAAATATTTGGATAAACTACGCGTAGCAT
GAAACAGCGAAATCTTAGGAATAATAAAGCACTCAAACGCCTCCAGCAGC
CAGATAATAAAAATCTAAATTGTTGCTTGAGTAAACGTTGCAACTATGAA
AATATCTGGCAGCATTTCAATAGCAATGCCACCCTTGAGGAAATTCGACA
TGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCCTGGAAAGTGG
TTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGGGCTGTCAAAT
TTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACGATGAGCTGGA
CGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACCGCAACTGTGA
CCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGCTGCCAAGGCG
GTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACGATGACGTCGC
CGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAGCGATGCGATA
GTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGCCCCCAAGCAG
CAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCCATGGTGATCA
CGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCCCTTCTCAGTG
AACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGGCGGACGTATT
GAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAATTGGGAGAGCA
ACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATCCACAGTCTTA
ATATACCCATGTCTAAGGAGCCCGATTGGATTTGGAATTGTATGCAGCGT
TGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCCAAACGAATCA
AAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGACCTTTGACT
ACGTTCAAGAGATGGCCTGGATTAGGTCGATTATCGATGAAGGAGATTAT
CCAGTTGTGTTCTGTCATAATGATCTGCAAGAAGGTAATATTCTGATGCG
ACAACCGTCAGCTGGTCAAAACGAACGGACCCCCCGGGAGTCAATCAGTA
GCCTGAGATCCAACTTCGACGAAACTTTGGGTGATAGCCTTGATGGAAAT
AGCAATATATCGGATACGGAGACACACAAATCACGTAGCGTGTCGCCTTC
ACCATGCCCGGAGTTGGACACTACGAATGACTCAGCCCTGGATTCCAGCT
TCATGGCCGATAATGAGCCGGATCTTATTATCATCGACTTTGAGTATTGT
GCCTACAACTACCGTGGCTATGATCTTGCCAATCATTTCATTGAGTGGAC
TTTCGACTACACTAACCCACAGTTCCCTTACTTCTACCACAACTCCAGCA
ACTGCGCAACTGTTCAGCAACGGCGCGACTTCATTGTAAACTATTTAAAG
AAATTTCACGATGACGAGAACTATAATATCACTGGCCAGGAGTTGATGAA
GGTAGACGCTGAGATTCAGTTCTTTACAATGCTGTCTCATCTGTTCTGGA
GCCTTTGGTCCGTAATTAATGTCACATCGGCGATTGAGTTTGGTTATTGG
GAATATGGTATTGCTCGAATTTTGGAATATCAAAAGCTAAAGGCAGCTTA
TCAAGCTAATTAAGACAAATATCTGAACCTTTATATAAATCGAATCAGAA
CCATAGTTAACTAGCCTAGACTTAATTGACCTTGCAATACCTGTCCGTCT
TTGTCCGTGTCTAGAAATATTTTTAACTAAAAATGTTTGAATAGTTCATA
CAAAACATTAAATAACATCGAACTACTTTAAAAGACTAAAAAAAAAAAAA
AAA

RE24176.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-RB 2510 CG2201-RB 1..1988 1..1988 9925 99.9 Plus
CG2201-RE 2893 CG2201-RE 1571..2694 865..1988 5605 99.9 Plus
CG2201.d 3121 CG2201.d 1571..2694 865..1988 5605 99.9 Plus
CG2201-RE 2893 CG2201-RE 1..866 1..866 4330 100 Plus
CG2201.d 3121 CG2201.d 1..866 1..866 4330 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21613596..21614020 1751..1327 2110 99.8 Minus
chr2L 23010047 chr2L 21614676..21615068 1257..865 1965 100 Minus
chr2L 23010047 chr2L 21615986..21616317 714..383 1660 100 Minus
chr2L 23010047 chr2L 21616989..21617266 278..1 1390 100 Minus
chr2L 23010047 chr2L 21613298..21613535 1987..1750 1190 100 Minus
chr2L 23010047 chr2L 21615773..21615928 866..711 780 100 Minus
chr2L 23010047 chr2L 21616498..21616604 384..278 535 100 Minus
chr2L 23010047 chr2L 21614102..21614172 1326..1256 355 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21615102..21615526 1751..1327 2110 99.8 Minus
2L 23513712 2L 21616182..21616574 1257..865 1965 100 Minus
2L 23513712 2L 21617492..21617823 714..383 1660 100 Minus
2L 23513712 2L 21618495..21618772 278..1 1390 100 Minus
2L 23513712 2L 21614803..21615041 1988..1750 1195 100 Minus
2L 23513712 2L 21617279..21617434 866..711 780 100 Minus
2L 23513712 2L 21618004..21618110 384..278 535 100 Minus
2L 23513712 2L 21615608..21615678 1326..1256 355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21615102..21615526 1751..1327 2110 99.7 Minus
2L 23513712 2L 21616182..21616574 1257..865 1965 100 Minus
2L 23513712 2L 21617492..21617823 714..383 1660 100 Minus
2L 23513712 2L 21618495..21618772 278..1 1390 100 Minus
2L 23513712 2L 21614803..21615041 1988..1750 1195 100 Minus
2L 23513712 2L 21617279..21617434 866..711 780 100 Minus
2L 23513712 2L 21618004..21618110 384..278 535 100 Minus
2L 23513712 2L 21615608..21615678 1326..1256 355 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:51:57 has no hits.

RE24176.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:52:59 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21613298..21613534 1751..1987 100 <- Minus
chr2L 21613597..21614020 1327..1750 99 <- Minus
chr2L 21614102..21614170 1258..1326 100 <- Minus
chr2L 21614676..21615067 866..1257 100 <- Minus
chr2L 21615774..21615926 713..865 100 <- Minus
chr2L 21615988..21616315 385..712 100 <- Minus
chr2L 21616498..21616604 278..384 100 <- Minus
chr2L 21616990..21617266 1..277 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:58 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1665 149..1813 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:32:13 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1665 149..1813 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:38:05 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1665 149..1813 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:15:58 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1665 149..1813 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-22 09:10:48 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1987 1..1987 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:32:13 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 1..1987 1..1987 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:38:05 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 3..1989 1..1987 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:15:58 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
CG2201-RB 3..1989 1..1987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:59 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618496..21618772 1..277 100   Minus
2L 21618004..21618110 278..384 100 <- Minus
2L 21614804..21615040 1751..1987 100 <- Minus
2L 21615103..21615526 1327..1750 99 <- Minus
2L 21615608..21615676 1258..1326 100 <- Minus
2L 21616182..21616573 866..1257 100 <- Minus
2L 21617280..21617432 713..865 100 <- Minus
2L 21617494..21617821 385..712 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:59 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618496..21618772 1..277 100   Minus
2L 21618004..21618110 278..384 100 <- Minus
2L 21614804..21615040 1751..1987 100 <- Minus
2L 21615103..21615526 1327..1750 99 <- Minus
2L 21615608..21615676 1258..1326 100 <- Minus
2L 21616182..21616573 866..1257 100 <- Minus
2L 21617280..21617432 713..865 100 <- Minus
2L 21617494..21617821 385..712 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:59 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21618496..21618772 1..277 100   Minus
2L 21618004..21618110 278..384 100 <- Minus
2L 21614804..21615040 1751..1987 100 <- Minus
2L 21615103..21615526 1327..1750 99 <- Minus
2L 21615608..21615676 1258..1326 100 <- Minus
2L 21616182..21616573 866..1257 100 <- Minus
2L 21617280..21617432 713..865 100 <- Minus
2L 21617494..21617821 385..712 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:38:05 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21616182..21616573 866..1257 100 <- Minus
arm_2L 21617280..21617432 713..865 100 <- Minus
arm_2L 21614804..21615040 1751..1987 100 <- Minus
arm_2L 21615103..21615526 1327..1750 99 <- Minus
arm_2L 21615608..21615676 1258..1326 100 <- Minus
arm_2L 21617494..21617821 385..712 100 <- Minus
arm_2L 21618004..21618110 278..384 100 <- Minus
arm_2L 21618496..21618772 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:16:46 Download gff for RE24176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21617280..21617432 713..865 100 <- Minus
2L 21616182..21616573 866..1257 100 <- Minus
2L 21614804..21615040 1751..1987 100 <- Minus
2L 21615103..21615526 1327..1750 99 <- Minus
2L 21615608..21615676 1258..1326 100 <- Minus
2L 21617494..21617821 385..712 100 <- Minus
2L 21618004..21618110 278..384 100 <- Minus
2L 21618496..21618772 1..277 100   Minus

RE24176.pep Sequence

Translation from 148 to 1812

> RE24176.pep
MKQRNLRNNKALKRLQQPDNKNLNCCLSKRCNYENIWQHFNSNATLEEIR
HAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDEL
DEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDV
ADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQPREVLLRIYGQTHGD
HALESMITESVVFALLSERNYGPKLHGIFPGGRIEQYIPARALTTAELGE
QRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTN
QKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPVVFCHNDLQEGNILM
RQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSP
SPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAYNYRGYDLANHFIEW
TFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKFHDDENYNITGQELM
KVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEYGIARILEYQKLKAA
YQAN*

RE24176.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14425-PA 529 GF14425-PA 8..526 44..551 1836 68.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21484-PA 522 GG21484-PA 8..521 44..553 2491 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10948-PA 577 GH10948-PA 1..576 1..553 2020 68.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-PF 554 CG2201-PF 1..554 1..554 2939 100 Plus
CG2201-PB 554 CG2201-PB 1..554 1..554 2939 100 Plus
CG2201-PG 518 CG2201-PG 8..518 44..554 2696 100 Plus
CG2201-PA 518 CG2201-PA 8..518 44..554 2696 100 Plus
CG2201-PC 415 CG2201-PC 1..415 140..554 2206 100 Plus
CG2201-PE 240 CG2201-PE 1..239 1..239 1257 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12154-PA 571 GI12154-PA 1..568 1..551 1987 67.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25955-PA 558 GL25955-PA 1..557 1..553 2115 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15298-PA 567 GA15298-PA 8..566 1..553 2122 74.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16134-PA 559 GM16134-PA 1..559 1..554 2727 91.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21635-PA 520 GD21635-PA 8..520 44..554 2521 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14204-PA 545 GJ14204-PA 1..544 1..553 2011 69.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24872-PA 569 GK24872-PA 1..568 1..553 2109 70.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12985-PA 524 GE12985-PA 8..523 44..553 2473 89.1 Plus

RE24176.hyp Sequence

Translation from 148 to 1812

> RE24176.hyp
MKQRNLRNNKALKRLQQPDNKNLNCCLSKRCNYENIWQHFNSNATLEEIR
HAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDEL
DEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDV
ADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQPREVLLRIYGQTHGD
HALESMITESVVFALLSERNYGPKLHGIFPGGRIEQYIPARALTTAELGE
QRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTN
QKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPVVFCHNDLQEGNILM
RQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSP
SPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAYNYRGYDLANHFIEW
TFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKFHDDENYNITGQELM
KVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEYGIARILEYQKLKAA
YQAN*

RE24176.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2201-PF 554 CG2201-PF 1..554 1..554 2939 100 Plus
CG2201-PB 554 CG2201-PB 1..554 1..554 2939 100 Plus
CG2201-PG 518 CG2201-PG 8..518 44..554 2696 100 Plus
CG2201-PA 518 CG2201-PA 8..518 44..554 2696 100 Plus
CG2201-PC 415 CG2201-PC 1..415 140..554 2206 100 Plus