BDGP Sequence Production Resources |
Search the DGRC for RE24176
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 241 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2201-RB |
Protein status: | RE24176.pep: gold |
Sequenced Size: | 2003 |
Gene | Date | Evidence |
---|---|---|
CG2201-RB | 2009-06-22 | Replacement based on scoring |
2003 bp assembled on 2009-09-22
GenBank Submission: BT099790.1
> RE24176.complete AGTTTGTTTTCGTACGCCCAGCTGGGAACTACTAACTGCTAAGAGCTCAA CGAAAAGACTAACTGTGTGCCTTCGCTACATTTTTTAAATTTATATAATA CGATTTCTATCATATAGTACATAAATATTTGGATAAACTACGCGTAGCAT GAAACAGCGAAATCTTAGGAATAATAAAGCACTCAAACGCCTCCAGCAGC CAGATAATAAAAATCTAAATTGTTGCTTGAGTAAACGTTGCAACTATGAA AATATCTGGCAGCATTTCAATAGCAATGCCACCCTTGAGGAAATTCGACA TGCGGCCGCGCGTATTTGCCGAGACTATCTAACTGGGCCCTGGAAAGTGG TTACTCCGGAGAGTTTGGTAGTGAAGCGCATAAGTGGCGGGCTGTCAAAT TTCTTGTATTACGTAAGCCTTCCCGATTTAAATGACTACGATGAGCTGGA CGAACAGAAACAGCAGCAGGAAGACATCATAGGGGCCACCGCAACTGTGA CCAATAGAAGCGGAGTTTTCATACACGACGATGAGTCGGCTGCCAAGGCG GTGGGCGTAACATTGATGGCGAGGGAATTAATAAATAACGATGACGTCGC CGACGCAGCTCCTGGCGCCACACAAGCACACAAACGTCAGCGATGCGATA GTAATAGTCGCGAATGCAGTTCTTCGAAACGATTGCACGCCCCCAAGCAG CAACCCCGTGAGGTCCTTCTGCGAATATATGGTCAGACCCATGGTGATCA CGCCCTGGAGAGCATGATTACCGAGTCCGTGGTTTTCGCCCTTCTCAGTG AACGGAACTATGGGCCCAAACTGCACGGAATCTTTCCGGGCGGACGTATT GAACAATATATTCCGGCACGCGCTTTGACCACAGCAGAATTGGGAGAGCA ACGAATATTAAAGAGAGTGGCTGAGAAAATGGGTGAGATCCACAGTCTTA ATATACCCATGTCTAAGGAGCCCGATTGGATTTGGAATTGTATGCAGCGT TGGGTTTCCGGTTTAGAGAGCATTGTTAACGGCAGTGTCCAAACGAATCA AAAATCTTCGGTACTGAAGAAGCAAATGGAATTGATGCGGACCTTTGACT ACGTTCAAGAGATGGCCTGGATTAGGTCGATTATCGATGAAGGAGATTAT CCAGTTGTGTTCTGTCATAATGATCTGCAAGAAGGTAATATTCTGATGCG ACAACCGTCAGCTGGTCAAAACGAACGGACCCCCCGGGAGTCAATCAGTA GCCTGAGATCCAACTTCGACGAAACTTTGGGTGATAGCCTTGATGGAAAT AGCAATATATCGGATACGGAGACACACAAATCACGTAGCGTGTCGCCTTC ACCATGCCCGGAGTTGGACACTACGAATGACTCAGCCCTGGATTCCAGCT TCATGGCCGATAATGAGCCGGATCTTATTATCATCGACTTTGAGTATTGT GCCTACAACTACCGTGGCTATGATCTTGCCAATCATTTCATTGAGTGGAC TTTCGACTACACTAACCCACAGTTCCCTTACTTCTACCACAACTCCAGCA ACTGCGCAACTGTTCAGCAACGGCGCGACTTCATTGTAAACTATTTAAAG AAATTTCACGATGACGAGAACTATAATATCACTGGCCAGGAGTTGATGAA GGTAGACGCTGAGATTCAGTTCTTTACAATGCTGTCTCATCTGTTCTGGA GCCTTTGGTCCGTAATTAATGTCACATCGGCGATTGAGTTTGGTTATTGG GAATATGGTATTGCTCGAATTTTGGAATATCAAAAGCTAAAGGCAGCTTA TCAAGCTAATTAAGACAAATATCTGAACCTTTATATAAATCGAATCAGAA CCATAGTTAACTAGCCTAGACTTAATTGACCTTGCAATACCTGTCCGTCT TTGTCCGTGTCTAGAAATATTTTTAACTAAAAATGTTTGAATAGTTCATA CAAAACATTAAATAACATCGAACTACTTTAAAAGACTAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2201-RB | 2510 | CG2201-RB | 1..1988 | 1..1988 | 9925 | 99.9 | Plus |
CG2201-RE | 2893 | CG2201-RE | 1571..2694 | 865..1988 | 5605 | 99.9 | Plus |
CG2201.d | 3121 | CG2201.d | 1571..2694 | 865..1988 | 5605 | 99.9 | Plus |
CG2201-RE | 2893 | CG2201-RE | 1..866 | 1..866 | 4330 | 100 | Plus |
CG2201.d | 3121 | CG2201.d | 1..866 | 1..866 | 4330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 21613596..21614020 | 1751..1327 | 2110 | 99.8 | Minus |
chr2L | 23010047 | chr2L | 21614676..21615068 | 1257..865 | 1965 | 100 | Minus |
chr2L | 23010047 | chr2L | 21615986..21616317 | 714..383 | 1660 | 100 | Minus |
chr2L | 23010047 | chr2L | 21616989..21617266 | 278..1 | 1390 | 100 | Minus |
chr2L | 23010047 | chr2L | 21613298..21613535 | 1987..1750 | 1190 | 100 | Minus |
chr2L | 23010047 | chr2L | 21615773..21615928 | 866..711 | 780 | 100 | Minus |
chr2L | 23010047 | chr2L | 21616498..21616604 | 384..278 | 535 | 100 | Minus |
chr2L | 23010047 | chr2L | 21614102..21614172 | 1326..1256 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21615102..21615526 | 1751..1327 | 2110 | 99.8 | Minus |
2L | 23513712 | 2L | 21616182..21616574 | 1257..865 | 1965 | 100 | Minus |
2L | 23513712 | 2L | 21617492..21617823 | 714..383 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 21618495..21618772 | 278..1 | 1390 | 100 | Minus |
2L | 23513712 | 2L | 21614803..21615041 | 1988..1750 | 1195 | 100 | Minus |
2L | 23513712 | 2L | 21617279..21617434 | 866..711 | 780 | 100 | Minus |
2L | 23513712 | 2L | 21618004..21618110 | 384..278 | 535 | 100 | Minus |
2L | 23513712 | 2L | 21615608..21615678 | 1326..1256 | 355 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 21615102..21615526 | 1751..1327 | 2110 | 99.7 | Minus |
2L | 23513712 | 2L | 21616182..21616574 | 1257..865 | 1965 | 100 | Minus |
2L | 23513712 | 2L | 21617492..21617823 | 714..383 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 21618495..21618772 | 278..1 | 1390 | 100 | Minus |
2L | 23513712 | 2L | 21614803..21615041 | 1988..1750 | 1195 | 100 | Minus |
2L | 23513712 | 2L | 21617279..21617434 | 866..711 | 780 | 100 | Minus |
2L | 23513712 | 2L | 21618004..21618110 | 384..278 | 535 | 100 | Minus |
2L | 23513712 | 2L | 21615608..21615678 | 1326..1256 | 355 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 21613298..21613534 | 1751..1987 | 100 | <- | Minus |
chr2L | 21613597..21614020 | 1327..1750 | 99 | <- | Minus |
chr2L | 21614102..21614170 | 1258..1326 | 100 | <- | Minus |
chr2L | 21614676..21615067 | 866..1257 | 100 | <- | Minus |
chr2L | 21615774..21615926 | 713..865 | 100 | <- | Minus |
chr2L | 21615988..21616315 | 385..712 | 100 | <- | Minus |
chr2L | 21616498..21616604 | 278..384 | 100 | <- | Minus |
chr2L | 21616990..21617266 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1665 | 149..1813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1665 | 149..1813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1665 | 149..1813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1665 | 149..1813 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1987 | 1..1987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 1..1987 | 1..1987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 3..1989 | 1..1987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2201-RB | 3..1989 | 1..1987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21618496..21618772 | 1..277 | 100 | Minus | |
2L | 21618004..21618110 | 278..384 | 100 | <- | Minus |
2L | 21614804..21615040 | 1751..1987 | 100 | <- | Minus |
2L | 21615103..21615526 | 1327..1750 | 99 | <- | Minus |
2L | 21615608..21615676 | 1258..1326 | 100 | <- | Minus |
2L | 21616182..21616573 | 866..1257 | 100 | <- | Minus |
2L | 21617280..21617432 | 713..865 | 100 | <- | Minus |
2L | 21617494..21617821 | 385..712 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21618496..21618772 | 1..277 | 100 | Minus | |
2L | 21618004..21618110 | 278..384 | 100 | <- | Minus |
2L | 21614804..21615040 | 1751..1987 | 100 | <- | Minus |
2L | 21615103..21615526 | 1327..1750 | 99 | <- | Minus |
2L | 21615608..21615676 | 1258..1326 | 100 | <- | Minus |
2L | 21616182..21616573 | 866..1257 | 100 | <- | Minus |
2L | 21617280..21617432 | 713..865 | 100 | <- | Minus |
2L | 21617494..21617821 | 385..712 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21618496..21618772 | 1..277 | 100 | Minus | |
2L | 21618004..21618110 | 278..384 | 100 | <- | Minus |
2L | 21614804..21615040 | 1751..1987 | 100 | <- | Minus |
2L | 21615103..21615526 | 1327..1750 | 99 | <- | Minus |
2L | 21615608..21615676 | 1258..1326 | 100 | <- | Minus |
2L | 21616182..21616573 | 866..1257 | 100 | <- | Minus |
2L | 21617280..21617432 | 713..865 | 100 | <- | Minus |
2L | 21617494..21617821 | 385..712 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 21616182..21616573 | 866..1257 | 100 | <- | Minus |
arm_2L | 21617280..21617432 | 713..865 | 100 | <- | Minus |
arm_2L | 21614804..21615040 | 1751..1987 | 100 | <- | Minus |
arm_2L | 21615103..21615526 | 1327..1750 | 99 | <- | Minus |
arm_2L | 21615608..21615676 | 1258..1326 | 100 | <- | Minus |
arm_2L | 21617494..21617821 | 385..712 | 100 | <- | Minus |
arm_2L | 21618004..21618110 | 278..384 | 100 | <- | Minus |
arm_2L | 21618496..21618772 | 1..277 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 21617280..21617432 | 713..865 | 100 | <- | Minus |
2L | 21616182..21616573 | 866..1257 | 100 | <- | Minus |
2L | 21614804..21615040 | 1751..1987 | 100 | <- | Minus |
2L | 21615103..21615526 | 1327..1750 | 99 | <- | Minus |
2L | 21615608..21615676 | 1258..1326 | 100 | <- | Minus |
2L | 21617494..21617821 | 385..712 | 100 | <- | Minus |
2L | 21618004..21618110 | 278..384 | 100 | <- | Minus |
2L | 21618496..21618772 | 1..277 | 100 | Minus |
Translation from 148 to 1812
> RE24176.pep MKQRNLRNNKALKRLQQPDNKNLNCCLSKRCNYENIWQHFNSNATLEEIR HAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDEL DEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDV ADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQPREVLLRIYGQTHGD HALESMITESVVFALLSERNYGPKLHGIFPGGRIEQYIPARALTTAELGE QRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTN QKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPVVFCHNDLQEGNILM RQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSP SPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAYNYRGYDLANHFIEW TFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKFHDDENYNITGQELM KVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEYGIARILEYQKLKAA YQAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14425-PA | 529 | GF14425-PA | 8..526 | 44..551 | 1836 | 68.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21484-PA | 522 | GG21484-PA | 8..521 | 44..553 | 2491 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10948-PA | 577 | GH10948-PA | 1..576 | 1..553 | 2020 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2201-PF | 554 | CG2201-PF | 1..554 | 1..554 | 2939 | 100 | Plus |
CG2201-PB | 554 | CG2201-PB | 1..554 | 1..554 | 2939 | 100 | Plus |
CG2201-PG | 518 | CG2201-PG | 8..518 | 44..554 | 2696 | 100 | Plus |
CG2201-PA | 518 | CG2201-PA | 8..518 | 44..554 | 2696 | 100 | Plus |
CG2201-PC | 415 | CG2201-PC | 1..415 | 140..554 | 2206 | 100 | Plus |
CG2201-PE | 240 | CG2201-PE | 1..239 | 1..239 | 1257 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12154-PA | 571 | GI12154-PA | 1..568 | 1..551 | 1987 | 67.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25955-PA | 558 | GL25955-PA | 1..557 | 1..553 | 2115 | 74 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15298-PA | 567 | GA15298-PA | 8..566 | 1..553 | 2122 | 74.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16134-PA | 559 | GM16134-PA | 1..559 | 1..554 | 2727 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21635-PA | 520 | GD21635-PA | 8..520 | 44..554 | 2521 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14204-PA | 545 | GJ14204-PA | 1..544 | 1..553 | 2011 | 69.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24872-PA | 569 | GK24872-PA | 1..568 | 1..553 | 2109 | 70.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12985-PA | 524 | GE12985-PA | 8..523 | 44..553 | 2473 | 89.1 | Plus |
Translation from 148 to 1812
> RE24176.hyp MKQRNLRNNKALKRLQQPDNKNLNCCLSKRCNYENIWQHFNSNATLEEIR HAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDEL DEQKQQQEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDV ADAAPGATQAHKRQRCDSNSRECSSSKRLHAPKQQPREVLLRIYGQTHGD HALESMITESVVFALLSERNYGPKLHGIFPGGRIEQYIPARALTTAELGE QRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTN QKSSVLKKQMELMRTFDYVQEMAWIRSIIDEGDYPVVFCHNDLQEGNILM RQPSAGQNERTPRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSP SPCPELDTTNDSALDSSFMADNEPDLIIIDFEYCAYNYRGYDLANHFIEW TFDYTNPQFPYFYHNSSNCATVQQRRDFIVNYLKKFHDDENYNITGQELM KVDAEIQFFTMLSHLFWSLWSVINVTSAIEFGYWEYGIARILEYQKLKAA YQAN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2201-PF | 554 | CG2201-PF | 1..554 | 1..554 | 2939 | 100 | Plus |
CG2201-PB | 554 | CG2201-PB | 1..554 | 1..554 | 2939 | 100 | Plus |
CG2201-PG | 518 | CG2201-PG | 8..518 | 44..554 | 2696 | 100 | Plus |
CG2201-PA | 518 | CG2201-PA | 8..518 | 44..554 | 2696 | 100 | Plus |
CG2201-PC | 415 | CG2201-PC | 1..415 | 140..554 | 2206 | 100 | Plus |