BDGP Sequence Production Resources |
Search the DGRC for RE24409
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 244 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Mf-RB |
Protein status: | RE24409.pep: gold |
Sequenced Size: | 1654 |
Gene | Date | Evidence |
---|---|---|
CG6803 | 2001-12-14 | Blastp of sequenced clone |
CG6803 | 2002-01-01 | Sim4 clustering to Release 2 |
Zeelin1 | 2008-04-29 | Release 5.5 accounting |
Mf | 2008-08-15 | Release 5.9 accounting |
Mf | 2008-12-18 | 5.12 accounting |
1654 bp (1654 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071198
> RE24409.complete TGGCAGTTTGAAAAAATTCTTCGTTGAGGATAGATCGCTATTTTTTAGGA GTAAATTTAAATTCGAACGAGTTCAACGATTTTTTCGTGAACAGAACAAA ACAAATCGATCAAAATGTTCAAAAACCACTTGGAAATGATTGGGCGCAAT GAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCCCT GAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCGTC CCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACGAG CCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTGCC AGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCATC ACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGAAT GATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGCTA TGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCCCC TGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTCGT CGCTCGGCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGCGA GCCGTACGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCCAC GCGGAGGACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCACG CGGCCCAGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTTGA ACGTAAGTTGCCCGCGATCGCCGAGGCTGATTCGGCGCCAGCTGATGCGC CCAGTCGGCCACTCGGTATCTTTGAGCGCGCCGGTTCGCCAAGTCCCACT CCCGTGAAAGCCGGTCGCTGGGGACCCCGTCCCACCGAAGTCGCCTACGA TGCTGAGGGACTCCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGC TGAGCCCCAGCCCCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTC TGGTGGGACGTGGATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCG TGCCTCGAGCCCCGTAGCCCGGGATTCGTACTTGTCGCCGGTGAAGAACC GCTACTTGTGGTCCAAGCACCCAGCTAGACCCTTGACACCTGAGGAAGAG GATTTATTCTAAACAAATTATATAGATTCAAAATCACAAACAATCGTTTA GCTCTAATAACAAAGCGACGCTATACAAATCATATAGCAGTTCTGTAATT TTTTTGTACTTAATTTTACATAAATTACACGTAACGAAACGTAAAAAAAA AAACAAATTGCTCACCGCTCAATTTTGTAAACGAACGAAACAACGAACTA CACACCAACTAAATAACATCCTGAAGAACTAAAACAACGAATGCATCACA CAAGGGGCCCCCAAAACAATGACAACCTGCTTTGGAGTAGATCAGTAGCA AAAGGCTTTGCAAGTCTTAATATCCGTGAAAAACGTTTGAATTTTTTCAA AACTGCAAGAACTCCCCTCGGAACGAGAAAACAACCATCACTTTCGTCTG GGGTTCTCAAAATATTTGCCAAGAAGTGCGTAATTCCCAAAAAAAAAAAA AAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mf-RB | 2336 | Mf-RB | 228..1878 | 3..1653 | 8195 | 99.7 | Plus |
Mf.e | 2192 | Mf.e | 241..1041 | 3..803 | 4005 | 100 | Plus |
Mf-RJ | 1992 | Mf-RJ | 38..838 | 3..803 | 4005 | 100 | Plus |
Mf.e | 2192 | Mf.e | 1041..1735 | 959..1653 | 3415 | 99.4 | Plus |
Mf-RJ | 1992 | Mf-RJ | 838..1532 | 959..1653 | 3415 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10998609..10998973 | 959..595 | 1810 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 10995726..10996004 | 1638..1360 | 1395 | 100 | Minus |
chr3R | 27901430 | chr3R | 10997229..10997460 | 1189..958 | 1145 | 99.6 | Minus |
chr3R | 27901430 | chr3R | 11002908..11003118 | 415..205 | 1055 | 100 | Minus |
chr3R | 27901430 | chr3R | 10996565..10996739 | 1360..1186 | 860 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 11003666..11003808 | 206..64 | 700 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 11000813..11000924 | 595..484 | 560 | 100 | Minus |
chr3R | 27901430 | chr3R | 11000991..11001066 | 487..412 | 365 | 98.7 | Minus |
chr3R | 27901430 | chr3R | 11004836..11004896 | 63..3 | 305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15173980..15174344 | 959..595 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 15171082..15171375 | 1653..1360 | 1425 | 99 | Minus |
3R | 32079331 | 3R | 15172600..15172831 | 1189..958 | 1145 | 99.6 | Minus |
3R | 32079331 | 3R | 15178280..15178490 | 415..205 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15171936..15172110 | 1360..1186 | 860 | 99.4 | Minus |
3R | 32079331 | 3R | 15179038..15179180 | 206..64 | 715 | 100 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 595..484 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 487..412 | 365 | 98.7 | Minus |
3R | 32079331 | 3R | 15180208..15180268 | 63..3 | 305 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14914811..14915175 | 959..595 | 1825 | 100 | Minus |
3R | 31820162 | 3R | 14911913..14912206 | 1653..1360 | 1425 | 98.9 | Minus |
3R | 31820162 | 3R | 14913431..14913662 | 1189..958 | 1145 | 99.5 | Minus |
3R | 31820162 | 3R | 14919111..14919321 | 415..205 | 1055 | 100 | Minus |
3R | 31820162 | 3R | 14912767..14912941 | 1360..1186 | 860 | 99.4 | Minus |
3R | 31820162 | 3R | 14919869..14920011 | 206..64 | 715 | 100 | Minus |
3R | 31820162 | 3R | 14917015..14917126 | 595..484 | 560 | 100 | Minus |
3R | 31820162 | 3R | 14917193..14917268 | 487..412 | 365 | 98.6 | Minus |
3R | 31820162 | 3R | 14921039..14921099 | 63..3 | 305 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10996565..10996735 | 1190..1360 | 100 | <- | Minus |
chr3R | 10995726..10996003 | 1361..1638 | 100 | <- | Minus |
chr3R | 10997229..10997459 | 959..1189 | 99 | <- | Minus |
chr3R | 10998610..10998972 | 596..958 | 99 | <- | Minus |
chr3R | 11000813..11000922 | 486..595 | 100 | <- | Minus |
chr3R | 11000993..11001062 | 416..485 | 100 | <- | Minus |
chr3R | 11002908..11003117 | 206..415 | 100 | <- | Minus |
chr3R | 11003667..11003808 | 64..205 | 99 | <- | Minus |
chr3R | 11004836..11004897 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1098 | 115..1212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1098 | 115..1212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1098 | 115..1212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1098 | 115..1212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1098 | 115..1212 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1638 | 1..1638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1638 | 1..1638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1638 | 1..1638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1638 | 1..1638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mf-RB | 1..1638 | 1..1638 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15176184..15176293 | 486..595 | 100 | <- | Minus |
3R | 15176364..15176433 | 416..485 | 100 | <- | Minus |
3R | 15178280..15178489 | 206..415 | 100 | <- | Minus |
3R | 15179039..15179180 | 64..205 | 100 | <- | Minus |
3R | 15180208..15180269 | 1..63 | 98 | Minus | |
3R | 15171097..15171374 | 1361..1638 | 100 | <- | Minus |
3R | 15171936..15172106 | 1190..1360 | 100 | <- | Minus |
3R | 15172600..15172830 | 959..1189 | 99 | <- | Minus |
3R | 15173981..15174343 | 596..958 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15176184..15176293 | 486..595 | 100 | <- | Minus |
3R | 15176364..15176433 | 416..485 | 100 | <- | Minus |
3R | 15178280..15178489 | 206..415 | 100 | <- | Minus |
3R | 15179039..15179180 | 64..205 | 100 | <- | Minus |
3R | 15180208..15180269 | 1..63 | 98 | Minus | |
3R | 15171097..15171374 | 1361..1638 | 100 | <- | Minus |
3R | 15171936..15172106 | 1190..1360 | 100 | <- | Minus |
3R | 15172600..15172830 | 959..1189 | 99 | <- | Minus |
3R | 15173981..15174343 | 596..958 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15176184..15176293 | 486..595 | 100 | <- | Minus |
3R | 15176364..15176433 | 416..485 | 100 | <- | Minus |
3R | 15178280..15178489 | 206..415 | 100 | <- | Minus |
3R | 15179039..15179180 | 64..205 | 100 | <- | Minus |
3R | 15180208..15180269 | 1..63 | 98 | Minus | |
3R | 15171097..15171374 | 1361..1638 | 100 | <- | Minus |
3R | 15171936..15172106 | 1190..1360 | 100 | <- | Minus |
3R | 15172600..15172830 | 959..1189 | 99 | <- | Minus |
3R | 15173981..15174343 | 596..958 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10996819..10997096 | 1361..1638 | 100 | <- | Minus |
arm_3R | 10997658..10997828 | 1190..1360 | 100 | <- | Minus |
arm_3R | 10998322..10998552 | 959..1189 | 99 | <- | Minus |
arm_3R | 10999703..11000065 | 596..958 | 100 | <- | Minus |
arm_3R | 11001906..11002015 | 486..595 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 416..485 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 206..415 | 100 | <- | Minus |
arm_3R | 11004761..11004902 | 64..205 | 100 | <- | Minus |
arm_3R | 11005930..11005991 | 1..63 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14911928..14912205 | 1361..1638 | 100 | <- | Minus |
3R | 14912767..14912937 | 1190..1360 | 100 | <- | Minus |
3R | 14913431..14913661 | 959..1189 | 99 | <- | Minus |
3R | 14914812..14915174 | 596..958 | 100 | <- | Minus |
3R | 14917015..14917124 | 486..595 | 100 | <- | Minus |
3R | 14917195..14917264 | 416..485 | 100 | <- | Minus |
3R | 14919111..14919320 | 206..415 | 100 | <- | Minus |
3R | 14919870..14920011 | 64..205 | 100 | <- | Minus |
3R | 14921039..14921100 | 1..63 | 98 | Minus |
Translation from 114 to 1211
> RE24409.pep MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS KHPARPLTPEEEDLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17159-PA | 370 | GF17159-PA | 1..370 | 1..365 | 1728 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20880-PA | 365 | GG20880-PA | 1..365 | 1..365 | 1864 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14549-PA | 367 | GH14549-PA | 1..367 | 1..365 | 1670 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mf-PB | 365 | CG6803-PB | 1..365 | 1..365 | 1953 | 100 | Plus |
Mf-PM | 364 | CG6803-PM | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PL | 364 | CG6803-PL | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PJ | 313 | CG6803-PJ | 1..313 | 1..365 | 1615 | 85.8 | Plus |
Mf-PF | 313 | CG6803-PF | 1..313 | 1..365 | 1615 | 85.8 | Plus |
Mf-PD | 312 | CG6803-PD | 1..312 | 1..364 | 1585 | 84.6 | Plus |
Mf-PO | 310 | CG6803-PO | 1..310 | 1..364 | 1557 | 83.8 | Plus |
Mf-PI | 230 | CG6803-PI | 1..229 | 1..229 | 1221 | 100 | Plus |
Mf-PH | 236 | CG6803-PH | 1..229 | 1..229 | 1221 | 100 | Plus |
Mf-PE | 166 | CG6803-PE | 1..164 | 1..164 | 869 | 99.4 | Plus |
Mf-PQ | 168 | CG6803-PQ | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PC | 168 | CG6803-PC | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PN | 157 | CG6803-PN | 1..156 | 1..163 | 802 | 94.5 | Plus |
Mf-PG | 157 | CG6803-PG | 1..156 | 1..163 | 802 | 94.5 | Plus |
Mf-PA | 157 | CG6803-PA | 1..156 | 1..163 | 802 | 94.5 | Plus |
Mf-PP | 119 | CG6803-PP | 1..100 | 1..100 | 534 | 100 | Plus |
Mf-PK | 119 | CG6803-PK | 1..100 | 1..100 | 534 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23663-PA | 367 | GI23663-PA | 1..367 | 1..365 | 1725 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21688-PA | 367 | GL21688-PA | 1..367 | 1..365 | 1708 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19873-PB | 367 | GA19873-PB | 1..367 | 1..365 | 1710 | 93.2 | Plus |
Dpse\GA19873-PA | 313 | GA19873-PA | 1..313 | 1..365 | 1491 | 82.2 | Plus |
Dpse\GA19873-PC | 312 | GA19873-PC | 1..312 | 1..364 | 1473 | 81.9 | Plus |
Dpse\GA19873-PD | 168 | GA19873-PD | 1..162 | 1..162 | 825 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25804-PA | 367 | GM25804-PA | 1..367 | 1..364 | 1825 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20380-PA | 236 | GD20380-PA | 1..229 | 1..229 | 1179 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23223-PA | 363 | GJ23223-PA | 1..363 | 1..365 | 1708 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13979-PA | 368 | GK13979-PA | 1..368 | 1..365 | 1670 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26409-PA | 313 | GE26409-PA | 1..313 | 1..365 | 1537 | 84.9 | Plus |
Translation from 114 to 1211
> RE24409.hyp MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP EDKLLAELNKARRSASPFRPARTTRAGSEPYVPPPSYWNREGSVPRGGPS VFDRATSLAPFTRPSFRASSLEPLDELFERKLPAIAEADSAPADAPSRPL GIFERAGSPSPTPVKAGRWGPRPTEVAYDAEGLPIFHPRNRFRDLLSPSP NLPISSIVRDPFWWDVDDLVPFRATSVPRASSPVARDSYLSPVKNRYLWS KHPARPLTPEEEDLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Mf-PB | 365 | CG6803-PB | 1..365 | 1..365 | 1953 | 100 | Plus |
Mf-PM | 364 | CG6803-PM | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PL | 364 | CG6803-PL | 1..364 | 1..364 | 1923 | 98.9 | Plus |
Mf-PJ | 313 | CG6803-PJ | 1..313 | 1..365 | 1615 | 85.8 | Plus |
Mf-PF | 313 | CG6803-PF | 1..313 | 1..365 | 1615 | 85.8 | Plus |