Clone RE24410 Report

Search the DGRC for RE24410

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:244
Well:10
Vector:pFlc-1
Associated Gene/TranscriptCG7017-RA
Protein status:RE24410.pep: gold
Preliminary Size:1086
Sequenced Size:1425

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7017 2002-01-01 Sim4 clustering to Release 2
CG7017 2003-01-01 Sim4 clustering to Release 3
CG7017 2003-02-24 Blastp of sequenced clone
CG7017 2008-04-29 Release 5.5 accounting
CG7017 2008-08-15 Release 5.9 accounting
CG7017 2008-12-18 5.12 accounting

Clone Sequence Records

RE24410.complete Sequence

1425 bp (1425 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004862

> RE24410.complete
AGTATCATTTGAGTTGTGAGTGCCGCCAAGATCGCAGCGGGGCGTTCGAG
AAACCAGGATACAAGTTAACCAAAGGATATAAAACATGAATAGAGCTAGC
GGTGTCCTGTCGCTGCTGTTTGTGGCCAGCGCCCTGGGCGGCGTGATCGA
GGACTTTGAATACCTATCGGTGGCCGAGATGTGCGACCTGCTGCCGCAGG
AGACAAGCTTCCTGCGACCGAATACCTGCGACAACTGGGTGCGGTGCGCC
AGCAACTACAGCGTGCTGGAGCAGGGCGGCTGTGCCGCAGGACTCAACTA
CAACAAGGAGCTAGGCCGCTGCATCCTGGCATCCTCCAGCGCCGCGGTGT
GTCCCTATGCCGACAGCATTGCGGACAAGGCCACGAACCTGTGCGCCAAC
GAAACGGAAGGCGCCTTCATCGTGGATCCCAGCAGCAGCGATTGTCGCGG
CTACATCTTGTGCAAGTCGCACAAGCAGATCAAGGCCAACTGTCCCAACG
AGCTGATCTTCCATCCCGTATCGAGGTCTTGCGTGTACGAAAAGCAGTAC
CGTTGCCCCATCAGCCAGACGAAGAAGACCAGTCCCGCCTGCCGATCCCT
GCCGAACAACACCCGTCTGGCCGATCCCGTCCACTGTGACCAGTACTACG
AGTGCGTCAGCGAGGTCTTGCACAGCCGAGCCTGTCCAGTGGCCAGTGCC
TACGATGCTAATCTCGGCTACTGCGTGGATGTGGCTGAGGTGTCCTGCTA
CGAGAGTGCCGCCCTGCCGGAACCGGAAAACACCTTCTGCCTGGACAGTG
CCACCGGATCCGCTCGCGTTGGCTACTTTGCCGACGACGAGTCCTGCTCC
CACTACTATATCTGTGGCAGCCCCGTCGCCGGCAAGCACGACACGGAGCC
CAAGCACCTGAGCTGTCCACTTGGCCAGTACTTCGACTTCGAGAAGCTCT
CGTGCCGCGACAGACTTAACGTACGCTGCCAGCTGGACAGGTGTGTGGGC
ACCAACATCACCTACGTAAACGTCGCCGGCGATTGCCAGAGCTATGGACG
TTGCTCCGGCGGAGTGACCGTCAGCCTGGGCCAGTGCCCAACGGGCTACT
ACTTCGACGAGCGCAACCAGGGATGCACACAGACCAACTACCACAACATC
GCATGTTCCGTGTAGGCTGTCCCAGAAGATCGCATCCTTACCACAATCCT
TACCAAATCGCATCCAATTTAAATATCCAATAAATCGATCCAATTCATGG
TGGAGGTCAAATGCATTGCTTGAAAGGAATTCATGTACTTTGTGGTGGGA
AGTGTTAAGTTTTATGACATTCATCCATTTACTTTTTACCATGGAAATGG
GTCTACAAATATTAGCTTCTCGAAAAATGTCCAATAAATGTGTTACTCCA
TTGAAACCTGAAAAAAAAAAAAAAA

RE24410.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-RA 1635 CG7017-RA 176..1588 1..1413 7065 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20199617..20200933 1410..94 6540 99.8 Minus
chr3L 24539361 chr3L 20201203..20201297 95..1 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:43:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20210435..20211754 1413..94 6600 100 Minus
3L 28110227 3L 20212024..20212118 95..1 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20203535..20204854 1413..94 6600 100 Minus
3L 28103327 3L 20205124..20205218 95..1 475 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:50:22 has no hits.

RE24410.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:20 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20199617..20200931 96..1410 99 <- Minus
chr3L 20201203..20201297 1..95 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:03:55 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 86..1165 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:18 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 86..1165 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:36:07 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 86..1165 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:42 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 86..1165 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:44 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 86..1165 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:34 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1410 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:18 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 45..1454 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:36:07 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 45..1454 1..1410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:42 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1410 1..1410 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:44 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 5..1414 1..1410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:20 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20210438..20211752 96..1410 100 <- Minus
3L 20212024..20212118 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:20 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20210438..20211752 96..1410 100 <- Minus
3L 20212024..20212118 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:20 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20210438..20211752 96..1410 100 <- Minus
3L 20212024..20212118 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:36:07 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20203538..20204852 96..1410 100 <- Minus
arm_3L 20205124..20205218 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:02 Download gff for RE24410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20203538..20204852 96..1410 100 <- Minus
3L 20205124..20205218 1..95 100   Minus

RE24410.pep Sequence

Translation from 85 to 1164

> RE24410.pep
MNRASGVLSLLFVASALGGVIEDFEYLSVAEMCDLLPQETSFLRPNTCDN
WVRCASNYSVLEQGGCAAGLNYNKELGRCILASSSAAVCPYADSIADKAT
NLCANETEGAFIVDPSSSDCRGYILCKSHKQIKANCPNELIFHPVSRSCV
YEKQYRCPISQTKKTSPACRSLPNNTRLADPVHCDQYYECVSEVLHSRAC
PVASAYDANLGYCVDVAEVSCYESAALPEPENTFCLDSATGSARVGYFAD
DESCSHYYICGSPVAGKHDTEPKHLSCPLGQYFDFEKLSCRDRLNVRCQL
DRCVGTNITYVNVAGDCQSYGRCSGGVTVSLGQCPTGYYFDERNQGCTQT
NYHNIACSV*

RE24410.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24479-PA 366 GF24479-PA 4..358 1..359 1377 69.9 Plus
Dana\GF24480-PA 459 GF24480-PA 11..336 8..349 291 28.2 Plus
Dana\GF25312-PA 347 GF25312-PA 6..333 10..359 253 25.6 Plus
Dana\GF25313-PA 317 GF25313-PA 31..308 31..349 207 24.8 Plus
Dana\GF25314-PA 336 GF25314-PA 31..332 31..357 204 23.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13334-PA 359 GG13334-PA 1..359 1..359 1757 90.5 Plus
Dere\GG16084-PA 352 GG16084-PA 8..331 4..357 285 26.9 Plus
Dere\GG16087-PA 333 GG16087-PA 28..332 31..357 246 27.1 Plus
Dere\GG16088-PA 336 GG16088-PA 30..332 31..357 237 24.8 Plus
Dere\GG13869-PA 322 GG13869-PA 16..321 31..358 211 26.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15115-PA 336 GH15115-PA 1..336 21..359 1142 61.7 Plus
Dgri\GH16336-PA 324 GH16336-PA 4..300 45..359 284 28.3 Plus
Dgri\GH16338-PA 304 GH16338-PA 1..291 32..348 272 26.8 Plus
Dgri\GH14443-PA 346 GH14443-PA 9..346 3..358 242 26 Plus
Dgri\GH15114-PA 309 GH15114-PA 1..296 29..350 228 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-PB 359 CG7017-PB 1..359 1..359 1963 100 Plus
CG7017-PA 359 CG7017-PA 1..359 1..359 1963 100 Plus
CG6996-PC 364 CG6996-PC 28..333 32..359 323 27.2 Plus
CG6996-PB 364 CG6996-PB 28..333 32..359 323 27.2 Plus
CG7290-PB 419 CG7290-PB 26..330 27..347 315 26.1 Plus
CG7290-PA 419 CG7290-PA 26..330 27..347 315 26.1 Plus
CG17147-PB 337 CG17147-PB 2..333 1..357 311 26.6 Plus
CG17145-PB 334 CG17145-PB 28..332 31..357 304 27.5 Plus
CG17145-PA 334 CG17145-PA 28..332 31..357 304 27.5 Plus
CG5883-PA 339 CG5883-PA 6..338 4..358 264 25.8 Plus
CG43896-PB 1324 CG43896-PB 39..255 44..290 216 24.2 Plus
CG43896-PD 2113 CG43896-PD 39..255 44..290 216 24.2 Plus
CG43896-PC 2113 CG43896-PC 39..255 44..290 216 24.2 Plus
CG7298-PA 369 CG7298-PA 13..334 11..347 207 25 Plus
CG43896-PB 1324 CG43896-PB 38..255 115..347 203 21.8 Plus
CG43896-PD 2113 CG43896-PD 38..255 115..347 203 21.8 Plus
CG43896-PC 2113 CG43896-PC 38..255 115..347 203 21.8 Plus
CG31077-PB 988 CG31077-PB 102..362 46..352 195 24.1 Plus
Muc68D-PB 1514 CG6004-PB 1314..1508 103..293 182 26 Plus
obst-J-PA 353 CG7348-PA 3..268 2..299 179 24.5 Plus
CG43896-PB 1324 CG43896-PB 356..643 45..350 173 23.1 Plus
CG43896-PD 2113 CG43896-PD 356..643 45..350 173 23.1 Plus
CG43896-PC 2113 CG43896-PC 356..643 45..350 173 23.1 Plus
CG7248-PA 796 CG7248-PA 73..412 45..347 165 22 Plus
CG43896-PB 1324 CG43896-PB 168..455 48..341 164 22.6 Plus
CG43896-PD 2113 CG43896-PD 168..455 48..341 164 22.6 Plus
CG43896-PC 2113 CG43896-PC 168..455 48..341 164 22.6 Plus
CG17826-PA 751 CG17826-PA 91..340 45..351 161 23.1 Plus
CG7290-PB 419 CG7290-PB 149..335 23..218 160 27.5 Plus
CG7290-PA 419 CG7290-PA 149..335 23..218 160 27.5 Plus
CG7298-PA 369 CG7298-PA 103..335 45..291 159 23.3 Plus
CG43896-PB 1324 CG43896-PB 432..754 48..348 157 22.5 Plus
CG43896-PD 2113 CG43896-PD 432..754 48..348 157 22.5 Plus
CG43896-PC 2113 CG43896-PC 432..754 48..348 157 22.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13766-PA 360 GI13766-PA 21..360 18..359 1121 61 Plus
Dmoj\GI11529-PA 334 GI11529-PA 30..321 31..348 289 25.7 Plus
Dmoj\GI11528-PA 316 GI11528-PA 4..297 45..359 282 28.4 Plus
Dmoj\GI13577-PA 353 GI13577-PA 26..340 25..358 239 26.3 Plus
Dmoj\GI13796-PA 398 GI13796-PA 72..394 27..357 229 27.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25049-PA 401 GL25049-PA 67..397 21..358 1218 67.5 Plus
Dper\GL25118-PA 371 GL25118-PA 5..331 11..359 249 25.1 Plus
Dper\GL25051-PA 383 GL25051-PA 28..335 27..347 246 25.4 Plus
Dper\GL25119-PA 336 GL25119-PA 33..329 31..350 241 25.4 Plus
Dper\GL25071-PA 337 GL25071-PA 31..326 31..348 227 26.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20035-PA 394 GA20035-PA 59..390 20..358 1215 67 Plus
Dpse\GA20015-PA 369 GA20015-PA 5..331 11..359 251 25.4 Plus
Dpse\GA23597-PA 375 GA23597-PA 20..327 27..347 248 24.8 Plus
Dpse\GA14346-PA 336 GA14346-PA 33..329 31..350 239 25.4 Plus
Dpse\GA19200-PA 337 GA19200-PA 31..326 31..348 228 26.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22239-PA 359 GM22239-PA 1..359 1..359 1851 96.7 Plus
Dsec\GM22259-PA 360 GM22259-PA 9..333 5..359 284 25.6 Plus
Dsec\GM22240-PA 419 GM22240-PA 26..330 27..347 281 25.8 Plus
Dsec\GM22261-PA 338 GM22261-PA 2..334 1..357 262 26.5 Plus
Dsec\GM22260-PA 341 GM22260-PA 35..339 31..357 229 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12210-PA 359 GD12210-PA 1..359 1..359 1861 97.5 Plus
Dsim\GD12212-PA 419 GD12212-PA 26..330 27..347 284 26.1 Plus
Dsim\GD14858-PA 358 GD14858-PA 9..333 5..359 281 26.5 Plus
Dsim\GD14860-PA 338 GD14860-PA 2..334 1..357 261 27.1 Plus
Dsim\GD14859-PA 334 GD14859-PA 28..332 31..357 229 26.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13756-PA 477 GJ13756-PA 126..477 7..359 1191 62.1 Plus
Dvir\GJ11548-PA 334 GJ11548-PA 10..321 6..348 291 26.2 Plus
Dvir\GJ11547-PA 349 GJ11547-PA 32..338 32..359 274 27.5 Plus
Dvir\GJ11664-PA 325 GJ11664-PA 1..313 29..349 234 27.3 Plus
Dvir\GJ13911-PA 355 GJ13911-PA 28..342 25..358 223 24.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17243-PA 721 GK17243-PA 367..721 6..359 1186 61.6 Plus
Dwil\GK13618-PA 345 GK13618-PA 34..341 31..358 261 25.4 Plus
Dwil\GK16942-PA 338 GK16942-PA 23..325 21..348 254 25 Plus
Dwil\GK16941-PA 323 GK16941-PA 19..313 31..347 251 25.4 Plus
Dwil\GK16940-PA 338 GK16940-PA 4..298 45..359 246 27.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22426-PA 359 GE22426-PA 1..359 1..359 1804 93.3 Plus
Dyak\GE19648-PA 358 GE19648-PA 8..333 7..359 282 25.9 Plus
Dyak\GE23066-PA 358 GE23066-PA 8..333 7..359 282 25.9 Plus
Dyak\GE22941-PA 446 GE22941-PA 10..330 4..347 257 25.3 Plus
Dyak\GE19649-PA 334 GE19649-PA 28..323 31..348 239 27.1 Plus

RE24410.hyp Sequence

Translation from 85 to 1164

> RE24410.hyp
MNRASGVLSLLFVASALGGVIEDFEYLSVAEMCDLLPQETSFLRPNTCDN
WVRCASNYSVLEQGGCAAGLNYNKELGRCILASSSAAVCPYADSIADKAT
NLCANETEGAFIVDPSSSDCRGYILCKSHKQIKANCPNELIFHPVSRSCV
YEKQYRCPISQTKKTSPACRSLPNNTRLADPVHCDQYYECVSEVLHSRAC
PVASAYDANLGYCVDVAEVSCYESAALPEPENTFCLDSATGSARVGYFAD
DESCSHYYICGSPVAGKHDTEPKHLSCPLGQYFDFEKLSCRDRLNVRCQL
DRCVGTNITYVNVAGDCQSYGRCSGGVTVSLGQCPTGYYFDERNQGCTQT
NYHNIACSV*

RE24410.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-PB 359 CG7017-PB 1..359 1..359 1963 100 Plus
CG7017-PA 359 CG7017-PA 1..359 1..359 1963 100 Plus
CG6996-PC 364 CG6996-PC 28..333 32..359 323 27.2 Plus
CG6996-PB 364 CG6996-PB 28..333 32..359 323 27.2 Plus
CG7290-PB 419 CG7290-PB 26..330 27..347 315 26.1 Plus