BDGP Sequence Production Resources |
Search the DGRC for RE24422
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 244 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11076-RB |
Protein status: | RE24422.pep: wuzgold |
Preliminary Size: | 840 |
Sequenced Size: | 1150 |
Gene | Date | Evidence |
---|---|---|
CG11076 | 2001-12-14 | Blastp of sequenced clone |
CG11076 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11076 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11076 | 2008-04-29 | Release 5.5 accounting |
CG11076 | 2008-08-15 | Release 5.9 accounting |
CG11076 | 2008-12-18 | 5.12 accounting |
1150 bp (1150 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071199
> RE24422.complete ACTGACGACTGATACACCCATGAAAAGGTGGTTTAATGGATTGCAAGCTG ATGTGGCTGAGTAGAGGAGGAAAAACCTCGGAGCCAATTTCTGGAGGAGG AACAGTACGTGAACCTGACCTCAGGCGCGGCTGCTCGTGAGTGCTGCGGG GATGCTCTTTGGGATTTCGATGGTCAGACCGACGAAGCCTGGCTGGTCCA GTGTCCCAAGGGTGCAGATCCACATCTGCTAGTCGGCAAGCGCATTAGGC TTCCTGGCAGGAAGAGCGTGGGCGATCTCCAGGTTCGTGCCGTCAAAAAC TCGACGTTACAGAGCGAGGCACTGGGCTATTTGAGATCTATGGGTCCCTA TGCCCTCCGGAAAATTCCCTTTGTCGGCTATGTGGTAATCAGCAAGCGTC TATATGATAAACAACCGCTACCAGGTCAGAAGGAACATACAATTCAAGCT GATCTAACGCTACCCAAGTACCTATTACGAGAACGACATCCGTTGTTCGG GCGCAGCTACAAGCAACGCATCCAATTACCGAAGATGATTTCCACATCTC TTAGTCAAGCAGACGAGAAATTCTTGGAAGCTACTGCCAAGCTTCGCAGC ACTGCTAACTACTACAAGATCCGGAGCAAGCTGCACACCACCACACAGAC GCTAGAACAAAAAGAGGACGATGTGCGACAGTCGGTGCTTACCGGTCGTA CGCCGCAGTTCATGAAGGAAACAATAATCCCGGATCTATATAAAGATCTC TTAGACGAAGAGGACATCGAGAAAAATATAATGAACCCAGCAGAGGAAGT TGGTCCTGCCAAAATGCGCAAGAAAAAATTTAATTCAAACGGTCACAAAA CGGGAAATGCAGTAGGGAAATAGACAAAAGAAGCTTAAATTAAATGAAAG CAACGGCCGCTAATGACCTGGACGAAGTAATTGCACAAGAAGGCTTAAAA AAGTCGAATGGAAACCATTAAGAATTAGAGTTTACTTAAGATAAATTCAC ATACTTACGTAATTAAATAAAAATATGTAACGATTTGGATTATAGATTAT CACATATAAGCTGCATAAATTAATGTAGTCATTTAATAACGAAATAAAAT TGCACTTTGTCAAGGCGTGTTCACAGCACTATGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11076-RB | 1162 | CG11076-RB | 1..1133 | 1..1133 | 5650 | 99.9 | Plus |
CG11076-RA | 1261 | CG11076-RA | 193..1261 | 65..1133 | 5345 | 100 | Plus |
ATPsyn-beta.f | 1039 | ATPsyn-beta.f | 111..177 | 67..1 | 320 | 98.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
G3 | 4605 | G3 G3 4605bp | 4482..4590 | 998..1104 | 115 | 60.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr4 | 1050224..1051291 | 67..1134 | 99 | <- | Minus |
chr4 | 1052109..1052174 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RA | 32..840 | 65..873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RA | 32..840 | 65..873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RA | 32..840 | 65..873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RA | 32..840 | 65..873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RA | 32..840 | 65..873 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RB | 1..1133 | 1..1134 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RB | 1..1133 | 1..1133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RC | 98..1230 | 1..1133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RB | 1..1133 | 1..1134 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11076-RE | 98..1230 | 1..1133 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 1029710..1030777 | 67..1134 | 99 | <- | Minus |
4 | 1031595..1031660 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 1029710..1030777 | 67..1134 | 99 | <- | Minus |
4 | 1031595..1031660 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 1029710..1030777 | 67..1134 | 99 | <- | Minus |
4 | 1031595..1031660 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_4 | 1050336..1051403 | 67..1134 | 99 | <- | Minus |
arm_4 | 1052221..1052286 | 1..66 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
4 | 1029710..1030777 | 67..1134 | 99 | <- | Minus |
4 | 1031595..1031660 | 1..66 | 98 | Minus |
Translation from 339 to 872
> RE24422.pep MGPYALRKIPFVGYVVISKRLYDKQPLPGQKEHTIQADLTLPKYLLRERH PLFGRSYKQRIQLPKMISTSLSQADEKFLEATAKLRSTANYYKIRSKLHT TTQTLEQKEDDVRQSVLTGRTPQFMKETIIPDLYKDLLDEEDIEKNIMNP AEEVGPAKMRKKKFNSNGHKTGNAVGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20924-PA | 328 | GF20924-PA | 104..268 | 2..169 | 372 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16423-PA | 298 | GG16423-PA | 105..274 | 2..173 | 632 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14702-PA | 312 | GH14702-PA | 124..258 | 4..139 | 282 | 45.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11076-PE | 260 | CG11076-PE | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PD | 260 | CG11076-PD | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PA | 279 | CG11076-PA | 103..279 | 1..177 | 911 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21658-PA | 386 | GI21658-PA | 125..282 | 2..158 | 324 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16016-PA | 312 | GL16016-PA | 105..228 | 2..125 | 318 | 52.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22816-PA | 312 | GA22816-PA | 105..228 | 2..125 | 316 | 51.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13014-PA | 287 | GM13014-PA | 101..270 | 1..170 | 797 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24362-PA | 287 | GD24362-PA | 101..270 | 1..170 | 802 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16016-PA | 317 | GJ16016-PA | 121..305 | 2..168 | 321 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25433-PA | 323 | GK25433-PA | 106..249 | 2..145 | 365 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14492-PA | 274 | GE14492-PA | 102..265 | 2..172 | 561 | 67.8 | Plus |
Translation from 339 to 872
> RE24422.hyp MGPYALRKIPFVGYVVISKRLYDKQPLPGQKEHTIQADLTLPKYLLRERH PLFGRSYKQRIQLPKMISTSLSQADEKFLEATAKLRSTANYYKIRSKLHT TTQTLEQKEDDVRQSVLTGRTPQFMKETIIPDLYKDLLDEEDIEKNIMNP AEEVGPAKMRKKKFNSNGHKTGNAVGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11076-PE | 260 | CG11076-PE | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PD | 260 | CG11076-PD | 84..260 | 1..177 | 911 | 100 | Plus |
CG11076-PA | 279 | CG11076-PA | 103..279 | 1..177 | 911 | 100 | Plus |